Publication
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Book or Book Chapter
 　
1. 

YY Cai and J Brown, Proceedings of 2004 ACM SIGGRAPH International Conference on Virtual Reality Continuum and Its Applications in Industry, ACM Publisher, 2004. 
2. YQ Guan, YY Cai, M Opas and YT Lee, Virtual Reality Enhanced Volumetric Cellular Visualization, Current Issues in Multidisciplinary Microscopy Research and Education, FORMATEX Microscopy Book Series, 2005.
3. CK Chui, P Chen, Y Wang, M Ang Jr, and Y Cai, Tactile Controlling and Image Manipulation Apparatus for Computer Simulation of Image Guided Surgery, Recent Advances in Mechatronics, Springe-Verlag, pp. 423-443, 1999.
　

Journal Special Issues
1. YY Cai and JM Zheng (2009), VR in Medicine, A Special Issue with the International Journal of Virtual Reality, IOS publisher.
2. YY Cai and J Brown (2007), Virtual Reality Simulation, A Special Issue with the Journal Simulation And Gaming, SAGE publisher.
3. YY Cai, and PA Heng (2007), Bio Visualization, A Special Issue with the International Journal of Images and Graphics, World Scientific Publishing.
　

 Representative Papers

　 Pervasive & Digital Bio-medicine
1. WY Chen et al (2009), Kernal Modeling of Protein Surfaces using a Unified Representation, Accepted for publication in Journal CAD, Elsevier. 
2.

C. Indhumathi, YY Cai, YQ Guan and M. Opas (2009), 3D Boundary Extraction of Confocal Cellular Images Using Higher Order Statistics, Journal of Microscopy, Blackwell Publishing, Volume 235, Number 2, August 2009 , pp. 209-220(12).
3. YQ Guan, YY Cai, XC Zhang, YT Lee and M Opas (2007), Adaptive Correction Technique for 3D Reconstruction of Fluorescence Microscopy Images, Microscopy Research and Technique, Wiley, Vol. 71, No. 2, pp. 146-157.
4. YQ Guan, Y.Y Cai, Y.T.Lee and M Opas (2006), An Automatic Method for Identifying Appropriate Gradient Magnitude for 3D Boundary Detection of Confocal Image Stacks, Journal of Microscopy, Blackwell Publishing, Vol. 223, Pt 1 July 2006, pp. 66–72 .
5. Y-C Loke, S-B Tan, M David, YY Cai (2006). A Bayesian dose finding design for dual endpoint Phase I trials. Statistics in Medicine, Wiley, Vol. 25, pp.3-22.
6. YY Cai, CK Chui, XZ Ye,  Z Fan and JH Anderson (2006), Tactile VR for Hand-eye Coordination in Simulated PTCA, Computers in Biology and Medicine, Pergamon, Vol 36/2, pp 167-180.  
7. YP Wang, CK Chui, HL Lim, YY Cai and KH Mak (1999), Real-time interactive simulator for percutaneous coronary revascularization procedures, Computer Aided Surgery, Wiley-Liss, Vol. 3, No. 5, pp. 211–227.
　
　  Virtual Reality
8. JM Zheng and YY Cai (2006), Interpolation Over Arbitrary Topology Meshes Using a Two-Phase Subdivision Scheme,  IEEE Transactions on Visualization and Computer Graphics,  Vol. 12, No. 3, pp. 301-310.  
9. J. Zheng, Y.Y. Cai (2005). Making Doo-Sabin surface interpolation always work over irregular meshes. The Visual Computer, Vol.21, No.4., pp 242-251
10. YY Cai, CK Chui, XZ Ye et al (2004), Simulation-based Virtual Prototyping of Customized Catheterization Devices, Journal of Computing and Information Science in Engineering, Vol. 4, No. 2, ASME publisher,  pp. 132-139. 
11. YY Cai, CK Chui, XZ Ye, YP Wang and JH Anderson, VR simulated training for less invasive vascular intervention, Computers & Graphics, Vol. 27, No. 2, Elsevier, pp. 215-221
12.  XZ Ye, YY Cai et al (2002), Constructive modeling of G1 bifurcation, Computer Aided Geometric Design, Elsvier, Vol. 19,  No. 7, pp. 513 - 531.
13. Y. Y. Cai, A. Y. C. Nee and H. T. Loh (1996), Geometric Feature Detection for Reverse Engineering Using Range Imaging, Journal of Visual Communication and Image Representation, Vol. 7, No. 3, pp.  205-216. 
　
　  Digital Arts & Serious Games
14. XJ Shi, YY Cai and CW Chan (2007), An Initial Investigation into Electronic Music for Bio-Molecules Using Short Music Phrases, LEONARDO, Volume 40, Issue 2, MIT Press, pp. 137-141.
15. I Chandrasekaran, YY Cai, CR Cao, BF Lu, JM Zheng (2007), Virtual Reality Prototyping of Bio-molecules, Journal Virtual and Physical Prototyping, Taylor and Francis.
16.　 YY Cai, BF Lu, ZW Fan, CW Chan, KT Lim, L Qi and L Li(2006), Protein Immersive Games and Computer Music, Leonardo, MIT Press, Vol. 39, No 2, pp. 135-138.
17.  Ye, X.Z., Peng, W., Chen, Z.Y. and Cai, Y.Y., Today's students, tomorrow's engineers - An industrial perspective on cad education. Computer-Aided Design. Vol. 36. pp. 1451-1460.
18. YY Cai, BF Lu, JM Zheng, and L Li (2006), Immersive protein gaming for bio edutainment, Simulation and Gaming 37 (4), pp. 466-475.
　
　 Selected conference paper
19. YY Cai, YQ Guan, M. Opas, and YT Lee, VOLUMETRIC CONFOCAL IMAGE PROCESSING, Focus on Microscopy 2006, Perth, Australia, April, 2006
20. Chee-Kong Chui, Yiyu Cai, Zhenlan Wang, Xiuzi Ye, James H. Anderson, Swee-Hin Teoh and Ichiro Sakuma, Flow Visualization for Interactive Simulation of Drugs Injection during Chemoembolization,  2006 International Conference on Medicine Meets Virtual Reality.
21.  Z Li, CK Chui, YY Cai, S Amrith, P-S Goh, JH Anderson, J Teo, C Liu, I Kusuma, Y-S Siow and WL Nowinski, Modeling of human orbit from MR images, 2002 Medical Imaging Computing and Computer-assisted Intervention (MICCAI2002).
22. YC Loke, SB Tan, YY Cai and D Machin, A Bayesian Decision Theoretic Approach for Finding the Optimal Dose in a Phase I Clinical Trial, 7th Valencia International Meeting on Bayesian Statistics, Valencia, Spain, June, 2002.
 23. J Anderson, W Brody, C Kriz, YP Wang, CK Chui, YY Cai, R Viswanathan and R Raghavan, daVinci: a vascular catheterization and interventional radiology-based training and patient pretreatment planning simulator, 21st Annual Meeting of Society of Cardiovascular and Interventional Radiology , Seattle, USA, March 1996.
24. Wang Y, Chui CK, Cai YY, et al. ICard: An Interventional Cardiology simulator for percutaneous coronary revascularisation,  1998 COMPUTER ASSISTED RADIOLOGY AND SURGERY (CARS1998), pp.  934-934.
25. Anderson, J H, C K Chui, ZR Li, X Ma, YY Cai, YP Wang, K Murrphy, A Venbrux and WL Nowinski, PC based simulator for cardiovascular catheterization and image guided therapy.  87th Radiological Society of North America Annual Meeting (RSNA), Nov-Dec 2001, Chicago, USA.
　

Patent
1. YY Cai, et al, Virtual protein lab, patent granted, 2007.
2. YY Cai et al, Life Science Theme Park, patent granted, 2007.
3. JH Anderson, CK Chui, YY Cai, YP Wang, W Brody and W Nowinski, Advanced simulation system for customized interventional therapy device design, US & International Patent Pending.
4. JH Anderson, CK Chui, X Ma, YP Wang, YY Cai, W Brody and W Nowinski, Advanced simulation for cardiovascular image guided therapy, US & International Patent Pending.
5. CK Chui, P Chen, YP Wang, M Ang Jr, YP Wang, YY Cai and KH Mak, Apparatus for the simulation of image-guided surgery, US patent granted, 2003.
　

Selected Keynote and Invited Speech
1. Keynote Speech - Simulation in Immersive Learning, 39th Annual Conference of The International Simulation And Gaming Association, Kaunas, July 10, 2008 
2. Invited Talk - Hand-eye coordination in interventional VR Simulation, 10th Annual Conference of the International Society for Computer Aided Surgery, Osaka, Japan, June 28 - July 1, 2006.
3. Invited Talk - 3D Immersive VR Games, Korea Game Conference, Seoul, Korea, Nov 12, 2005.
4. Invited Talk - What Visualization Can Do For Structure Biology, Workshop on Data Analysis and Data Mining in Proteomics, Institute of Mathematical Science, National University of Singapore, May 12, 2005. 
5. Invited Talk - Augmented Reality for Customized Interventional Device Design, 1st Asia Symposium on Computer Aided Surgery, Organized by the Japanese Society of Computer-aided Surgery and the University of Tokyo, Japan, April 28, 2005.