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Workshop at ICCS 2010: I am organizing the "2nd Workshop on Emerging Parallel Architectures" - to be held at ICCS 2010.

PRIB 2008: I will be presenting two papers at the PRIB 2008 conference in Melbourne, 15-17 Oct 2008.

Progam Comittees: I am in the Programme Committees of IEEE HiCOMB 2009, IEEE CEC 2009, PBC 2009

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CUDASW++ paper and software available

Posted on Wednesday, May 06, 2009 at 1:41 PM by Bertil Schmidt

The CUDASW++ software for protein sequence database scanning on CUDA-enabled GPUs is now available for download at: http://cudasw.sourceforge.net/. The performancce of CUDASW++ is close to 10 GCUPS on a GTX 280 (single-GPU version), and upto 16 GCUPS on a GTX 295 (dual GPU version). Details can be found in the paper:

Y. Liu, D. Maskell, B. Schmidt: "CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units", BMC Research Notes 2009, 2:73

Edited on: Wednesday, May 06, 2009 1:53 PM

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