MOTIF A 1-1 722 ATTCTactat TTTCTTG cgcaattgct 728 1.000000 2-1 39 agtcctaaac TTTGTTT gattatgaaa 45 1.000000 3-1 331 cctacagggc TTTCTTT ttAAAACAGg 337 1.000000 4-1 652 ttggttttta TTTTTTT aagcaacatc 658 1.000000 5-1 383 tttgacgttg TTTTTGT agaacatgaa 389 1.000000 6-1 457 agagggcagt TTACTTT cacatactct 463 1.000000 7-1 689 tcctttccgg TTTTTTT ctcaactacc 695 1.000000 8-1 228 tgaagtcaga TTCGTAT gatattaata 234 1.000000 9-1 227 attactgcat TTTCTGT attaaacatg 233 1.000000 10-1 696 taagttctcc TTTCTTT cactttataa 702 1.000000 11-1 540 aattttggat TTTGTGT tcgaaaaagg 546 1.000000 12-1 482 gcaactttct TTTGTTT gcatatcttt 488 1.000000 13-1 769 gcggaaccgc TTTCTTT atttgaattg 775 1.000000 14-1 290 tctatagcgg TTCTATT tctgttaaca 296 1.000000 15-1 669 gattgtttcg TGTCTGG tatatattat 675 1.000000 16-1 540 aaatacataa TTCTTGT cacaatggat 546 1.000000 17-1 220 tttcttttct TTTCTTT TCCTTTTTtt 226 1.000000 18-1 97 cctgttcaaa TTTTTGA tacctatgtg 103 1.000000 19-1 402 tttgtttacg TATTTGT ttatatatat 408 1.000000 20-1 454 gctctgagtc TTTCTTT acggtgtttg 460 1.000000 21-1 704 TgTTTTTGTT TTTGTTT tgttttggtt 710 1.000000 22-1 500 GCGGaatatc TTTGTTT actcattaaa 506 1.000000 23-1 148 tgttgttcgt TTTGTTA taaggttgtt 154 1.000000 24-1 283 CGTTAaagct TTTGTAT agatactttc 289 1.000000 25-1 548 gtattttgtg TTTTTTA caacaacctc 554 1.000000 26-1 188 atgttgccca TTTTGTT cgctttgtta 194 1.000000 27-1 625 tctcgggttc ATTTTTT acgtcggtac 631 1.000000 28-1 563 TCacgggatt TTCGTTT aggtgAAAAT 569 1.000000 29-1 492 ttttgtttta TTCTTTT cttTCCTTCA 498 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 722 728 725 -w 1.000000 >2 39 45 42 -w 1.000000 >3 331 337 334 -w 1.000000 >4 652 658 655 -w 1.000000 >5 383 389 386 -w 1.000000 >6 457 463 460 -w 1.000000 >7 689 695 692 -w 1.000000 >8 228 234 231 -w 1.000000 >9 227 233 230 -w 1.000000 >10 696 702 699 -w 1.000000 >11 540 546 543 -w 1.000000 >12 482 488 485 -w 1.000000 >13 769 775 772 -w 1.000000 >14 290 296 293 -w 1.000000 >15 669 675 672 -w 1.000000 >16 540 546 543 -w 1.000000 >17 220 226 223 -w 1.000000 >18 97 103 100 -w 1.000000 >19 402 408 405 -w 1.000000 >20 454 460 457 -w 1.000000 >21 704 710 707 -w 1.000000 >22 500 506 503 -w 1.000000 >23 148 154 151 -w 1.000000 >24 283 289 286 -w 1.000000 >25 548 554 551 -w 1.000000 >26 188 194 191 -w 1.000000 >27 625 631 628 -w 1.000000 >28 563 569 566 -w 1.000000 >29 492 498 495 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 91 1.1 2 . . . 87 1.0 3 . . . 75 0.7 4 . 30 30 37 0.4 5 . . . 87 1.0 6 . . 24 66 0.6 7 . . . 78 0.7 non- site . . . 30 site . . . 78 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 14 11 2 . . . 13 10 3 . . . 10 7 4 . 2 2 1 4 5 . . . 13 10 6 . . 1 7 6 7 . . . 10 7 site . . . 11 7 Weighted motif model: POS A C G T Prob 1 0.059639 0.017586 0.016920 0.905854 1.143116 2 0.059639 0.017586 0.048268 0.874506 1.014625 3 0.059639 0.174326 0.016920 0.749114 0.729406 4 0.028292 0.299718 0.299052 0.372939 0.396845 5 0.059639 0.017586 0.048268 0.874506 1.014625 6 0.090987 0.017586 0.236356 0.655071 0.568654 7 0.122335 0.017586 0.079616 0.780462 0.719279 Conservedness in bits: 5.586550 Conservedness in prob: 8.929621 Concensus sequence: TTTGTTT Complete log-likelihood ratio = 210 bits Missing position information = 166 bits Log-likelihood ratio statistic = 43 bits Degrees of freedom = 21 Information per parameter = 2.08 bits MOTIF B 1-1 471 aaacagtatt GAAACAT atgtattacc 477 1.000000 2-1 746 agtaaattta GAAACAG caagcctcat 752 1.000000 3-1 340 cTTTCTTTtt AAAACAG gatgctaaag 346 1.000000 4-1 36 cttccgtttc AAAAATG aatataaTCG 42 1.000000 5-1 522 taacattttt AAAACTT TTTTTTTTtg 528 1.000000 6-1 706 tgcctctcag AAACTAT atatacgttg 712 1.000000 7-1 374 aaagatgtgt GTAAGTT aaaaagtccg 380 1.000000 8-1 382 aactttcatt GAAAATT agacagtcat 388 1.000000 9-1 120 ctttaaatta TAACCTT tctatcggta 126 1.000000 10-1 435 gcgtaacacg AAAAATG ctggtgcagg 441 1.000000 11-1 608 tgcactcttg GAAAAAT AAAAATAaaa 614 1.000000 12-1 640 aaattattaa AAGAAAA taaaactatc 646 1.000000 13-1 417 gtgaaacaga TAAAAAT tgttttaaaa 423 1.000000 14-1 653 aaaaatgttt TAAAAAT gtttcagccc 659 1.000000 15-1 615 atccgaaaaa GAAACTG aaaatgtaaa 621 1.000000 16-1 659 aaaTTGTTGT AAAACTG acatcatatg 665 1.000000 17-1 182 tctaccaaag GAATAAG atcaattcga 188 1.000000 18-1 171 ccaataacgc AAAACGG gctgtggata 177 1.000000 19-1 626 aaacaaacat GAAACGT ctgtaatttg 632 1.000000 20-1 505 ttgaaggtca GAAACTT tatggaatac 511 1.000000 21-1 146 cgccgaatac GAAACGT acgtcatgca 152 1.000000 22-1 651 ctcacacttg CAAAAAG catataaaaa 657 1.000000 23-1 455 attatgctaa GAAAGTA gaggcgacga 461 1.000000 24-1 766 aagcacacta CAAAAAT acgctatcat 772 1.000000 25-1 281 aatgcaaact GAACATA taagcctcac 287 1.000000 26-1 502 gaatcaggat GAATTAT ccaagaaacg 508 1.000000 27-1 148 ctatctcatc AAAACAG tgcgggttac 154 1.000000 28-1 386 Tagtagaatg AAAACTG attattaaaa 392 1.000000 29-1 55 CACAAGagag GAAGACG aattcaaaat 61 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 471 477 474 -w 1.000000 >2 746 752 749 -w 1.000000 >3 340 346 343 -w 1.000000 >4 36 42 39 -w 1.000000 >5 522 528 525 -w 1.000000 >6 706 712 709 -w 1.000000 >7 374 380 377 -w 1.000000 >8 382 388 385 -w 1.000000 >9 120 126 123 -w 1.000000 >10 435 441 438 -w 1.000000 >11 608 614 611 -w 1.000000 >12 640 646 643 -w 1.000000 >13 417 423 420 -w 1.000000 >14 653 659 656 -w 1.000000 >15 615 621 618 -w 1.000000 >16 659 665 662 -w 1.000000 >17 182 188 185 -w 1.000000 >18 171 177 174 -w 1.000000 >19 626 632 629 -w 1.000000 >20 505 511 508 -w 1.000000 >21 146 152 149 -w 1.000000 >22 651 657 654 -w 1.000000 >23 455 461 458 -w 1.000000 >24 766 772 769 -w 1.000000 >25 281 287 284 -w 1.000000 >26 502 508 505 -w 1.000000 >27 148 154 151 -w 1.000000 >28 386 392 389 -w 1.000000 >29 55 61 58 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 46 . 0.4 2 91 . . . 1.1 3 91 . . . 1.1 4 75 . . . 0.6 5 40 43 . . 0.4 6 44 . . 40 0.2 7 . . 39 47 0.5 non- site 31 . . . site 57 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 6 . 4 2 14 . . . 11 3 14 . . . 11 4 9 . . . 6 5 2 5 . . 4 6 2 . . 2 2 7 . . 4 3 5 site 5 . . . 2 Weighted motif model: POS A C G T Prob 1 0.341771 0.080282 0.455792 0.122155 0.369595 2 0.906034 0.017586 0.016920 0.059459 1.136019 3 0.906034 0.017586 0.048268 0.028111 1.144756 4 0.749295 0.111630 0.048268 0.090807 0.606794 5 0.404467 0.425110 0.079616 0.090807 0.377760 6 0.435815 0.048934 0.110964 0.404287 0.188252 7 0.122335 0.017586 0.393096 0.466983 0.476104 Conservedness in bits: 4.299280 Conservedness in prob: 8.343550 Concensus sequence: GAAACAG Complete log-likelihood ratio = 159 bits Missing position information = 142 bits Log-likelihood ratio statistic = 16 bits Degrees of freedom = 21 Information per parameter = 0.785 bits MOTIF C 1-1 570 ctttcgctct TTTGTAT gtaggcatca 576 1.000000 2-1 679 tataaaaggc TTTGTCT tgattcattg 685 1.000000 3-1 138 aaggtcgggt TTTGTCT catgttgttc 144 1.000000 4-1 325 catcagccta TCTTTCT atgcaagaat 331 1.000000 5-1 17 TGACCCAGTG TCTTCCC tatcttttga 23 1.000000 6-1 106 actcgcctcc TTTTTTT gtgcttcttg 112 1.000000 7-1 712 taccgtactc TTTTTCC ttttttattt 718 1.000000 8-1 427 catagtgata TTTGTTT gtttaccatt 433 1.000000 9-1 474 gggcactcac TTTTCCT ttttcgctgc 480 1.000000 10-1 670 cttaagtgtt TTTTTCT ttagtcttat 676 1.000000 11-1 393 CCTTCAgtaa TTTTTTT ttttaattta 399 1.000000 12-1 281 ggatgatttg CCTTTTT gaagttattt 287 1.000000 13-1 751 agaaaacaca CTTTTAT agcggaaccg 757 1.000000 14-1 185 ctactttaga TCTTTTT agatcctttt 191 1.000000 15-1 708 agagagcttc TTTTTTT atgctatcga 714 1.000000 16-1 397 ggcgtgattt TCTGTCT aaacattgcc 403 1.000000 17-1 546 ttgtaaagtc TCTTTTT ggatattgca 552 1.000000 18-1 255 actCCGGAAA TCTATCC actgttttca 261 1.000000 19-1 479 gatgcctcaa TCCTTCT tttgcttcca 485 1.000000 20-1 638 tatatctgct TTTTTTC cctttTTACG 644 1.000000 21-1 688 cggcttagcc TGTTTTT gTTTTTGTTT 694 1.000000 22-1 239 ccaagtcgta TATTTTT ctttatactg 245 1.000000 23-1 664 ACGTTTTttt TTTTTTT ttaaaggcat 670 1.000000 24-1 722 agtttccacg TCTTTCT gtattttcat 728 1.000000 25-1 243 aacgccagta TTTTTCC tgcggatact 249 1.000000 26-1 719 tcaagaatat TTCGTTT atcatatcca 725 1.000000 27-1 117 aacgctaacg TTTTTCT gaataatgct 123 1.000000 28-1 347 gtttacaagg TCTATCT gataagcaat 353 1.000000 29-1 689 cctaagggca TCTATTT aataaggtac 695 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 570 576 573 -w 1.000000 >2 679 685 682 -w 1.000000 >3 138 144 141 -w 1.000000 >4 325 331 328 -w 1.000000 >5 17 23 20 -w 1.000000 >6 106 112 109 -w 1.000000 >7 712 718 715 -w 1.000000 >8 427 433 430 -w 1.000000 >9 474 480 477 -w 1.000000 >10 670 676 673 -w 1.000000 >11 393 399 396 -w 1.000000 >12 281 287 284 -w 1.000000 >13 751 757 754 -w 1.000000 >14 185 191 188 -w 1.000000 >15 708 714 711 -w 1.000000 >16 397 403 400 -w 1.000000 >17 546 552 549 -w 1.000000 >18 255 261 258 -w 1.000000 >19 479 485 482 -w 1.000000 >20 638 644 641 -w 1.000000 >21 688 694 691 -w 1.000000 >22 239 245 242 -w 1.000000 >23 664 670 667 -w 1.000000 >24 722 728 725 -w 1.000000 >25 243 249 246 -w 1.000000 >26 719 725 722 -w 1.000000 >27 117 123 120 -w 1.000000 >28 347 353 350 -w 1.000000 >29 689 695 692 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.1 2 . 36 . 53 0.5 3 . . . 87 1.1 4 . . . 66 0.5 5 . . . 87 1.1 6 . 46 . 44 0.6 7 . . . 78 0.9 non- site . . . 30 site . . . 75 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 11 2 . 3 . 4 5 3 . . . 13 11 4 . . . 7 5 5 . . . 13 11 6 . 6 . 2 6 7 . . . 10 9 site . . . 10 8 Weighted motif model: POS A C G T Prob 1 0.028292 0.080282 0.016920 0.874506 1.053330 2 0.059639 0.362414 0.048268 0.529679 0.503376 3 0.028292 0.080282 0.016920 0.874506 1.053330 4 0.122335 0.017586 0.205008 0.655071 0.512398 5 0.028292 0.080282 0.016920 0.874506 1.053330 6 0.090987 0.456458 0.016920 0.435635 0.560787 7 0.028292 0.174326 0.016920 0.780462 0.859862 Conservedness in bits: 5.596413 Conservedness in prob: 9.062344 Concensus sequence: TCTTTCT Complete log-likelihood ratio = 213 bits Missing position information = 160 bits Log-likelihood ratio statistic = 52 bits Degrees of freedom = 21 Information per parameter = 2.49 bits MOTIF D 1-1 515 gtcgttcatt TTATTTTC acctaaacga 522 1.000000 2-1 392 atactcctgg TTCTTTCT catgaaccat 399 1.000000 3-1 643 tgagattttg TCTTTTTT tacctggtat 650 1.000000 4-1 115 tgccctatta TTCTTGCT tgtgctatct 122 1.000000 5-1 529 tttAAAACTT TTTTTTTT tgaaagTCCT 536 1.000000 6-1 583 aaatttttac TTTTTTTT tttttgtttc 590 1.000000 7-1 82 ttttctgcaa TTGTTTCA atgccctgta 89 1.000000 8-1 572 ctttactgta TTATTTTT tgatatccac 579 1.000000 9-1 492 tttcgctgcc TCTTTTTC ccatgcattt 499 1.000000 10-1 786 cggcagcaac TTTTTACT acaaaag 793 1.000000 11-1 687 tgatagcttc TTGTTTTA acaatacgat 694 1.000000 12-1 380 CATTGTtgct TTATTTTT ccaagtaagg 387 1.000000 13-1 340 aacacagcat TTCTTTTC ggagagctcg 347 1.000000 14-1 166 gcttatactt TTTTCTTT actactttag 173 1.000000 15-1 535 aacgctgccg TTATCGCC atgtttggtg 542 1.000000 16-1 272 agctgttcac TTGTTTTT atcgtatatc 279 1.000000 17-1 227 tctTTTCTTT TCCTTTTT ttacaatagc 234 1.000000 18-1 678 cactagcggg TTGTTTTA tcataattgt 685 1.000000 19-1 426 tataacttta TTTTTTTT tattaattgg 433 1.000000 20-1 614 catctctgtc TTTTCTGT tgtacatata 621 1.000000 21-1 696 ccTGTTTTTg TTTTTGTT TTTGTTTtgt 703 1.000000 22-1 769 ccatcgttga TTCTTTTT ggtaagatct 776 1.000000 23-1 379 aacagggtat TTTTTTTT tcacttctac 386 1.000000 24-1 385 ctctacagta TTATTTTT caacagacgg 392 1.000000 25-1 770 actgttagag TCTTTGGT acgcaaacat 777 1.000000 26-1 668 gacaaaattg TTTCTGCC tccaacggtt 675 1.000000 27-1 583 ctaggtataa TATTTGTT acaaattatt 590 1.000000 28-1 547 gcgatataaa TTTTTTTC acgggattTT 554 1.000000 29-1 572 cgcctgctta TTCTTTTT ccagctctct 579 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 515 522 518 -w 1.000000 >2 392 399 395 -w 1.000000 >3 643 650 646 -w 1.000000 >4 115 122 118 -w 1.000000 >5 529 536 532 -w 1.000000 >6 583 590 586 -w 1.000000 >7 82 89 85 -w 1.000000 >8 572 579 575 -w 1.000000 >9 492 499 495 -w 1.000000 >10 786 793 789 -w 1.000000 >11 687 694 690 -w 1.000000 >12 380 387 383 -w 1.000000 >13 340 347 343 -w 1.000000 >14 166 173 169 -w 1.000000 >15 535 542 538 -w 1.000000 >16 272 279 275 -w 1.000000 >17 227 234 230 -w 1.000000 >18 678 685 681 -w 1.000000 >19 426 433 429 -w 1.000000 >20 614 621 617 -w 1.000000 >21 696 703 699 -w 1.000000 >22 769 776 772 -w 1.000000 >23 379 386 382 -w 1.000000 >24 385 392 388 -w 1.000000 >25 770 777 773 -w 1.000000 >26 668 675 671 -w 1.000000 >27 583 590 586 -w 1.000000 >28 547 554 550 -w 1.000000 >29 572 579 575 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 94 1.3 2 . . . 78 0.8 4 . . . 91 1.2 5 . . . 84 1.0 6 . . . 72 0.7 7 . . . 69 0.6 8 . . . 66 0.5 non- site . . . 30 site . . . 83 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 15 13 2 . . . 10 8 4 . . . 14 12 5 . . . 12 10 6 . . . 9 7 7 . . . 8 6 8 . . . 7 5 site . . . 12 9 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.016920 0.937202 1.282005 2 0.059639 0.142978 0.016920 0.780462 0.779398 4 0.028292 0.048934 0.016920 0.905854 1.151197 5 0.028292 0.111630 0.016920 0.843158 0.975223 6 0.059639 0.017586 0.205008 0.717766 0.697582 7 0.028292 0.205674 0.079616 0.686418 0.612453 8 0.122335 0.205674 0.016920 0.655071 0.504300 Conservedness in bits: 6.002158 Conservedness in prob: 9.381454 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 229 bits Missing position information = 166 bits Log-likelihood ratio statistic = 62 bits Degrees of freedom = 21 Information per parameter = 2.98 bits MOTIF E 1-1 616 gaaggttgtg CATATAAA gggttttgca 623 1.000000 2-1 586 gaattgccgt ACAAAAAA tcgatctagc 593 1.000000 3-1 252 cacaatcacg TTTAAAAG ccttgttggc 259 1.000000 4-1 161 ataacaactg CATGGGAA aaattatata 168 1.000000 5-1 766 ttatagtaaa CAAACAAA caaacaaaca 773 1.000000 6-1 5 gggc AAAATAAA aaaggaaaaa 12 1.000000 7-1 622 caagaagcac AAAAAAAG gaggcgagta 629 1.000000 8-1 510 agctcgtatc AAAATAAA actagtcagt 517 1.000000 9-1 43 aagacgagaa AAAATAAA aacaacggca 50 1.000000 10-1 724 tctcctttat AAAAGTAA gacccggtgc 731 1.000000 11-1 788 aattatccgc AAATCGAA gacaa 795 1.000000 12-1 552 aaatacctaa AAAGGAAA taggcaataa 559 1.000000 13-1 362 agctcgtttc AAAATGAA acaaacgccg 369 1.000000 14-1 229 gactgcttta AAAGCGAG tttttgattt 236 1.000000 15-1 329 atattccaga AAAAGAAA tTCCTTCTtt 336 1.000000 16-1 176 acgcaccagt CAAAAAAG acaagtttaa 183 1.000000 17-1 629 gtaatgactt AAAACAAG cgactatcgc 636 1.000000 18-1 640 aaacaatgta AATAAGAA tacgtactgt 647 1.000000 19-1 30 tcaacaaggc CAAAACAA ccagcagcaa 37 1.000000 20-1 733 aaaaacaaaa ACAAAAAC aggctaagcc 740 1.000000 21-1 607 tcaaggtccg AAAATGCG tctatgctgg 614 1.000000 22-1 82 ccactcctca ACAGAAAA ccgtgctcgc 89 1.000000 23-1 30 Tattatataa AATATGAA tcatactaag 37 1.000000 24-1 436 acctcgaaca TAAAACAA cactgaaacA 443 1.000000 25-1 680 gaatgtaaac AAAAAAAA ctgtctaggt 687 1.000000 26-1 279 ATTCTgagat ACAACGAA gtgtagttgt 286 1.000000 27-1 61 ctgaaaagtc ACAAAAAA cccccggggg 68 1.000000 28-1 575 CGTTTaggtg AAAATAAA atgaACGACA 582 1.000000 29-1 791 taaagatacg AATATACA at 798 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 616 623 619 -w 1.000000 >2 586 593 589 -w 1.000000 >3 252 259 255 -w 1.000000 >4 161 168 164 -w 1.000000 >5 766 773 769 -w 1.000000 >6 5 12 8 -w 1.000000 >7 622 629 625 -w 1.000000 >8 510 517 513 -w 1.000000 >9 43 50 46 -w 1.000000 >10 724 731 727 -w 1.000000 >11 788 795 791 -w 1.000000 >12 552 559 555 -w 1.000000 >13 362 369 365 -w 1.000000 >14 229 236 232 -w 1.000000 >15 329 336 332 -w 1.000000 >16 176 183 179 -w 1.000000 >17 629 636 632 -w 1.000000 >18 640 647 643 -w 1.000000 >19 30 37 33 -w 1.000000 >20 733 740 736 -w 1.000000 >21 607 614 610 -w 1.000000 >22 82 89 85 -w 1.000000 >23 30 37 33 -w 1.000000 >24 436 443 439 -w 1.000000 >25 680 687 683 -w 1.000000 >26 279 286 282 -w 1.000000 >27 61 68 64 -w 1.000000 >28 575 582 578 -w 1.000000 >29 791 798 794 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 72 . . . 0.6 2 75 . . . 0.7 3 75 . . . 0.7 4 78 . . . 0.8 6 59 . 27 . 0.4 7 87 . . . 1.0 8 72 . . . 0.7 non- site 31 . . . site 78 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . . . 6 2 9 . . . 7 3 9 . . . 7 4 10 . . . 8 6 6 . 1 . 4 7 13 . . . 10 8 9 . . . 7 site 10 . . . 7 Weighted motif model: POS A C G T Prob 1 0.717947 0.174326 0.016920 0.090807 0.620608 2 0.749295 0.174326 0.016920 0.059459 0.723705 3 0.749295 0.017586 0.016920 0.216199 0.718856 4 0.780643 0.017586 0.142312 0.059459 0.778374 6 0.592555 0.080282 0.267704 0.059459 0.447615 7 0.874687 0.080282 0.016920 0.028111 1.046419 8 0.717947 0.048934 0.205008 0.028111 0.700145 Conservedness in bits: 5.035722 Conservedness in prob: 8.694079 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 190 bits Missing position information = 143 bits Log-likelihood ratio statistic = 47 bits Degrees of freedom = 21 Information per parameter = 2.26 bits MOTIF F 1-1 448 gacgcacttc TGAAACAG tattgaaaca 455 1.000000 2-1 119 agccactcgc TAACGCAA aaattatcgc 126 1.000000 3-1 612 atgatgttct AAAATCGG cattctcgct 619 1.000000 4-1 689 gttgagcttt TGACAAGA catactgctc 696 1.000000 5-1 103 aatttgagat CGACACGG acGCAAACGt 110 1.000000 6-1 215 agcccgagaa AAAAGCAG cgactgcact 222 1.000000 7-1 467 tttatatgga TCGCGTGA tgttttaagc 474 1.000000 8-1 644 tccgtttggc TGAAGCAA ctttgaaaca 651 1.000000 9-1 338 aacgaccttg AAACGAAA aaccgttcct 345 1.000000 10-1 222 atagatcatg AGACGCGA agccctattt 229 1.000000 11-1 255 gttcatatcc TAAAACGT gttgacaaca 262 1.000000 12-1 742 tgaccatcct TTACACAA agtctataga 749 1.000000 13-1 66 ttcttttagg TTTAAAAG atatgttgaa 73 1.000000 14-1 247 tttttgattt AGAAACAC caacagatac 254 1.000000 15-1 756 cacctaacac TAACAAAA ggaatacctg 763 1.000000 16-1 486 gggccggatt CTAAGAGC gcgcgcgagg 493 1.000000 17-1 311 tcttaatttt AACAGCAG ttaccacttg 318 1.000000 18-1 556 tttacgccca TAAATCGT ctatattAAA 563 1.000000 19-1 91 CAACAgggtc AGCAGCAG caacaaggcc 98 1.000000 20-1 650 TTTTCccttt TTACGCGG aaagcgcaaa 657 1.000000 21-1 88 gagtttccga TCACGTGG tctccgtgca 95 1.000000 22-1 486 TGTTGttatt AGCAGCGG aatatcTTTG 493 1.000000 23-1 702 ggacatctgt ATAAGAGG ctaagacaat 709 1.000000 24-1 270 atacttacag AGACGTTA aagctTTTGT 277 1.000000 25-1 19 tgCCTACAAt AAAAGCAA ttataactga 26 1.000000 26-1 602 tgtccagcat AAAAGAAA gcgagactac 609 1.000000 27-1 704 gcttgtttaa ATACGCAG tatacatttc 711 1.000000 28-1 170 ccttaataaa ATAATCGG gccttatcat 177 1.000000 29-1 737 gcaactgttt ATAAGAAG aataagtctg 744 1.000000 sites: * ****** 5 (29 sites in 29 sequences) Conservedness in sites: >1 448 455 451 -w 1.000000 >2 119 126 122 -w 1.000000 >3 612 619 615 -w 1.000000 >4 689 696 692 -w 1.000000 >5 103 110 106 -w 1.000000 >6 215 222 218 -w 1.000000 >7 467 474 470 -w 1.000000 >8 644 651 647 -w 1.000000 >9 338 345 341 -w 1.000000 >10 222 229 225 -w 1.000000 >11 255 262 258 -w 1.000000 >12 742 749 745 -w 1.000000 >13 66 73 69 -w 1.000000 >14 247 254 250 -w 1.000000 >15 756 763 759 -w 1.000000 >16 486 493 489 -w 1.000000 >17 311 318 314 -w 1.000000 >18 556 563 559 -w 1.000000 >19 91 98 94 -w 1.000000 >20 650 657 653 -w 1.000000 >21 88 95 91 -w 1.000000 >22 486 493 489 -w 1.000000 >23 702 709 705 -w 1.000000 >24 270 277 273 -w 1.000000 >25 19 26 22 -w 1.000000 >26 602 609 605 -w 1.000000 >27 704 711 707 -w 1.000000 >28 170 177 173 -w 1.000000 >29 737 744 740 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 50 . . 40 0.3 3 78 . . . 0.7 4 56 39 . . 0.7 5 . . 58 . 0.7 6 . 58 . . 0.7 7 50 . 42 . 0.6 8 37 . 46 . 0.4 non- site 31 . 18 . site 48 . 22 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 3 . . 2 3 3 10 . . . 7 4 5 4 . . 7 5 . . 10 . 7 6 . 9 . . 7 7 3 . 5 . 6 8 1 . 6 . 4 site 3 . 1 . 2 Weighted motif model: POS A C G T Prob 1 0.498511 0.080282 0.016920 0.404287 0.334816 3 0.780643 0.111630 0.048268 0.059459 0.711783 4 0.561207 0.393762 0.016920 0.028111 0.725366 5 0.279075 0.017586 0.581183 0.122155 0.686347 6 0.279075 0.581850 0.016920 0.122155 0.658293 7 0.498511 0.017586 0.424444 0.059459 0.641396 8 0.373119 0.080282 0.455792 0.090807 0.424225 Conservedness in bits: 4.182226 Conservedness in prob: 8.744838 Concensus sequence: AACGCGG Complete log-likelihood ratio = 156 bits Missing position information = 98 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.77 bits MOTIF G 1-1 421 gccagttata AGTTAAA attaatatgt 427 1.000000 2-1 356 cgtaagtctc AAAAAAA aattgggtta 362 1.000000 3-1 766 tcaatagtgc AAAAATA ggtaactaac 772 1.000000 4-1 345 caagaatgca AGAAAAA ttgatgtgat 351 1.000000 5-1 345 ttgggatgat AAAAAAA tcaccctgca 351 1.000000 6-1 780 aataaggcag AGAAAAA gaaaggaaaa 786 1.000000 7-1 144 gaaacaaaaa AAAAAAA agtaaaaatt 150 1.000000 8-1 336 ttccaagaat AGTAATT gccctatata 342 1.000000 9-1 716 taggaacaaa AGAAAAA gaaaactgga 722 1.000000 10-1 345 gatatcgcat AAAAAAA tggccagcta 351 1.000000 11-1 615 ttgGAAAAAT AAAAATA aaaagtggtc 621 1.000000 12-1 315 tacaggatga AAAAAAA aagacattgc 321 1.000000 13-1 400 tcgtctcaat AGAAAAA gtgaaacaga 406 1.000000 14-1 334 gataactcaa AAAACAA gagtacaata 340 1.000000 15-1 469 ttggtcaccc AGAAACA ggtgcagacc 475 1.000000 16-1 147 ccattctcac AAAAAAA actcagaaat 153 1.000000 17-1 608 ctgaaacaat ATTAAAA catagtaatg 614 1.000000 18-1 571 CGTctatatt AAAAAAA aggcagcata 577 1.000000 19-1 79 tatcagcatc AACAACA gggtcAGCAG 85 1.000000 20-1 698 aaaccaaaat AAATCAA accaaaccaa 704 1.000000 21-1 786 gtaaaaaggg AAAAAAA gcagatat 792 1.000000 22-1 139 ttaggaacat AAAAATA aatatctcgc 145 1.000000 23-1 434 aaaaatcaag AAAAAAA cctgattatg 440 1.000000 24-1 17 gcaactccag AGAAAAA gccaaaggaa 23 1.000000 25-1 656 taaatgcaaa AAAAAAA atgattcgaa 662 1.000000 26-1 550 ccacaccttt AAAAAAA accaagaacg 556 1.000000 27-1 787 aagccaaacc AAAAAAA ctataca 793 1.000000 28-1 370 caattgcgca AGAAAAT agtagaatgA 376 1.000000 29-1 253 aaaaaaaaaa AAAAAAA aaaaaatgtt 259 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 421 427 424 -w 1.000000 >2 356 362 359 -w 1.000000 >3 766 772 769 -w 1.000000 >4 345 351 348 -w 1.000000 >5 345 351 348 -w 1.000000 >6 780 786 783 -w 1.000000 >7 144 150 147 -w 1.000000 >8 336 342 339 -w 1.000000 >9 716 722 719 -w 1.000000 >10 345 351 348 -w 1.000000 >11 615 621 618 -w 1.000000 >12 315 321 318 -w 1.000000 >13 400 406 403 -w 1.000000 >14 334 340 337 -w 1.000000 >15 469 475 472 -w 1.000000 >16 147 153 150 -w 1.000000 >17 608 614 611 -w 1.000000 >18 571 577 574 -w 1.000000 >19 79 85 82 -w 1.000000 >20 698 704 701 -w 1.000000 >21 786 792 789 -w 1.000000 >22 139 145 142 -w 1.000000 >23 434 440 437 -w 1.000000 >24 17 23 20 -w 1.000000 >25 656 662 659 -w 1.000000 >26 550 556 553 -w 1.000000 >27 787 793 790 -w 1.000000 >28 370 376 373 -w 1.000000 >29 253 259 256 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 94 . . . 1.3 2 62 . 30 . 0.6 3 81 . . . 0.8 4 87 . . . 1.0 5 87 . . . 1.0 6 75 . . . 0.6 7 87 . . . 1.0 non- site 31 . . . site 87 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 15 . . . 13 2 6 . 2 . 6 3 11 . . . 8 4 13 . . . 10 5 13 . . . 10 6 9 . . . 6 7 13 . . . 10 site 13 . . . 10 Weighted motif model: POS A C G T Prob 1 0.937382 0.017586 0.016920 0.028111 1.274533 2 0.623903 0.017586 0.299052 0.059459 0.628379 3 0.811991 0.048934 0.016920 0.122155 0.804209 4 0.874687 0.017586 0.016920 0.090807 1.024164 5 0.874687 0.080282 0.016920 0.028111 1.046419 6 0.749295 0.080282 0.016920 0.153503 0.634357 7 0.874687 0.017586 0.016920 0.090807 1.024164 Conservedness in bits: 6.436226 Conservedness in prob: 9.718135 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 243 bits Missing position information = 182 bits Log-likelihood ratio statistic = 61 bits Degrees of freedom = 21 Information per parameter = 2.91 bits MOTIF H 1-1 166 gagacttcta TCGCATGTTG tatggatttg 175 1.000000 2-1 215 gcaaccacca TTTTTTTTTG ctccaaaggc 224 1.000000 3-1 224 tactgacata TCTCATTTTG agatacaaca 233 1.000000 4-1 50 ATGaatataa TCGTACGTTT accttgtggc 59 1.000000 5-1 7 ctacaa TGACCCAGTG TCTTCCCtat 16 1.000000 6-1 140 ttttgagctg TTGCATCATG ctgttattta 149 1.000000 7-1 410 aTCCTTATgt ATGTTCTTTT gaacgtcaag 419 1.000000 8-1 739 tataagagct ATTCACTATT ttaatatttg 748 1.000000 9-1 397 tcttccgtgc TACCACGTTG ctaccactga 406 1.000000 10-1 70 GCAGCACatc AGCTGCTTTG ctgcactgtt 79 1.000000 11-1 188 taggagacag ACCATCTTTG attcctattc 197 1.000000 12-1 138 tctaggtttg GGGCTTGTTG gtatgttgca 147 1.000000 13-1 596 caattagatt ACTTCTTTTT agttgacttt 605 1.000000 14-1 77 cgtttattgt TGTCTTTTTG cttgttggaa 86 1.000000 15-1 646 cagtaaaacg AGACCTGTTG atggattgtt 655 1.000000 16-1 625 gaactgaaac AAGTATATTG gctatctcta 634 1.000000 17-1 335 cttgaatgag AAACTTTTTG atgcctactc 344 1.000000 18-1 790 gtttctattc AAAAACTTTG a 799 1.000000 19-1 454 gctgcaagac AATTTTGTTG tcagtgatgc 463 1.000000 20-1 542 tatcggacat AATTGCGTTG gtcccgttca 551 1.000000 21-1 728 gtttggtttg ATTTATTTTG gtttggctta 737 1.000000 22-1 471 gcttaggggg TCTCTTGTTG ttattAGCAG 480 1.000000 23-1 11 gaatgttact TATCTTATAT attatataaA 20 1.000000 24-1 453 Acactgaaac AAACTTATTG cactcctgca 462 1.000000 25-1 585 tataccagtt TCTTGCATAG atgctactat 594 1.000000 26-1 736 atcatatcca AGCTCCGGTG tgtatgcatt 745 1.000000 27-1 660 atcaaaacac TTACATTTTG aggcctaccg 669 1.000000 28-1 82 acagtccata ATTCACGATT gcccagatag 91 1.000000 29-1 600 tctactttat ATACCCTTTT cgtggtcctt 609 1.000000 sites: * * ***** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 166 175 170 -w 1.000000 >2 215 224 219 -w 1.000000 >3 224 233 228 -w 1.000000 >4 50 59 54 -w 1.000000 >5 7 16 11 -w 1.000000 >6 140 149 144 -w 1.000000 >7 410 419 414 -w 1.000000 >8 739 748 743 -w 1.000000 >9 397 406 401 -w 1.000000 >10 70 79 74 -w 1.000000 >11 188 197 192 -w 1.000000 >12 138 147 142 -w 1.000000 >13 596 605 600 -w 1.000000 >14 77 86 81 -w 1.000000 >15 646 655 650 -w 1.000000 >16 625 634 629 -w 1.000000 >17 335 344 339 -w 1.000000 >18 790 799 794 -w 1.000000 >19 454 463 458 -w 1.000000 >20 542 551 546 -w 1.000000 >21 728 737 732 -w 1.000000 >22 471 480 475 -w 1.000000 >23 11 20 15 -w 1.000000 >24 453 462 457 -w 1.000000 >25 585 594 589 -w 1.000000 >26 736 745 740 -w 1.000000 >27 660 669 664 -w 1.000000 >28 82 91 86 -w 1.000000 >29 600 609 604 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 53 . . 40 0.4 4 . 52 . 37 0.6 6 . 43 . 53 0.7 7 . . 33 44 0.3 8 . . . 78 0.7 9 . . . 87 1.0 10 . . 71 . 1.1 non- site . . . 30 site . . . 54 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 4 . . 2 4 4 . 7 . 1 6 6 . 5 . 4 7 7 . . 3 2 3 8 . . . 10 7 9 . . . 13 10 10 . . 14 . 11 site . . . 4 2 Weighted motif model: POS A C G T Prob 1 0.529859 0.017586 0.048268 0.404287 0.408318 4 0.090987 0.519154 0.016920 0.372939 0.620228 6 0.028292 0.425110 0.016920 0.529679 0.737747 7 0.185031 0.048934 0.330400 0.435635 0.253138 8 0.122335 0.017586 0.079616 0.780462 0.719279 9 0.090987 0.017586 0.016920 0.874506 1.030802 10 0.028292 0.017586 0.706575 0.247547 1.121717 Conservedness in bits: 4.891229 Conservedness in prob: 8.915906 Concensus sequence: ACCGTTG Complete log-likelihood ratio = 184 bits Missing position information = 140 bits Log-likelihood ratio statistic = 44 bits Degrees of freedom = 21 Information per parameter = 2.1 bits MOTIF I 1-1 404 cctcttgcca GCAACAG gccagttata 410 1.000000 2-1 196 attcacttcg CGACCAA gagcaaccac 202 1.000000 3-1 573 gcattcagta CCGACAA tgctatactt 579 1.000000 4-1 398 TATTtcctct GCAGCAA caagtttcct 404 1.000000 5-1 113 CGACACGGac GCAAACG ttccaagaga 119 1.000000 6-1 663 ttgcagaaaa GCAACAT actaatatat 669 1.000000 7-1 764 ctgtatatct GGAAAAG ccctgaagtg 770 1.000000 8-1 265 agtaagccat GCAGCAA tgtaaagagt 271 1.000000 9-1 442 atccctgaac GGAACAG cgcctaaaaa 448 1.000000 10-1 60 tgttcttctt GCAGCAC atcAGCTGCT 66 1.000000 11-1 444 tttccattat GCAGCCA taagaggagg 450 1.000000 12-1 526 ttttcaacat GCAGCCA tttcaccgaa 532 1.000000 13-1 86 atgttgaaaa GCGACGG gcaacccact 92 1.000000 14-1 1 GCAGAAG tatcactaac 7 1.000000 15-1 115 ccccagtcgt ACAAAAG cacctctgca 121 1.000000 16-1 701 actcgcattt GCAAACA tatttaaaat 707 1.000000 17-1 660 taagcagttc CCAGCAA gcaattaaaa 666 1.000000 18-1 248 atgatcaact CCGGAAA TCTATCCact 254 1.000000 19-1 53 agcaatacca GCAACAA ggccaaaact 59 1.000000 20-1 291 ggaggcacac GCAGAAG ctagatactt 297 1.000000 21-1 193 acacgaagct GCAACAG ccgttcgtac 199 1.000000 22-1 167 ctcacggaag GCAACCA ctaactcctt 173 1.000000 23-1 723 agacaattac GCACACA acgcttttat 729 1.000000 24-1 628 ccagttttaa GCTACAA tggaacgtta 634 1.000000 25-1 11 aaaggtgttg CCTACAA tAAAAGCAAt 17 1.000000 26-1 520 caagaaacgt GCGGCAG gataatgccg 526 1.000000 27-1 247 agaggctgga ACAGAAG tcaaatgagg 253 1.000000 28-1 587 AATAAAatga ACGACAG agcatgcaga 593 1.000000 29-1 44 acttccaatg GCACAAG agagGAAGAC 50 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 404 410 407 -w 1.000000 >2 196 202 199 -w 1.000000 >3 573 579 576 -w 1.000000 >4 398 404 401 -w 1.000000 >5 113 119 116 -w 1.000000 >6 663 669 666 -w 1.000000 >7 764 770 767 -w 1.000000 >8 265 271 268 -w 1.000000 >9 442 448 445 -w 1.000000 >10 60 66 63 -w 1.000000 >11 444 450 447 -w 1.000000 >12 526 532 529 -w 1.000000 >13 86 92 89 -w 1.000000 >14 1 7 4 -w 1.000000 >15 115 121 118 -w 1.000000 >16 701 707 704 -w 1.000000 >17 660 666 663 -w 1.000000 >18 248 254 251 -w 1.000000 >19 53 59 56 -w 1.000000 >20 291 297 294 -w 1.000000 >21 193 199 196 -w 1.000000 >22 167 173 170 -w 1.000000 >23 723 729 726 -w 1.000000 >24 628 634 631 -w 1.000000 >25 11 17 14 -w 1.000000 >26 520 526 523 -w 1.000000 >27 247 253 250 -w 1.000000 >28 587 593 590 -w 1.000000 >29 44 50 47 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 68 . 1.0 2 . 83 . . 1.5 3 72 . . . 0.6 4 50 . 36 . 0.5 5 . 61 . . 0.9 6 72 . . . 0.7 7 47 . 42 . 0.5 non- site 31 19 18 . site 42 29 26 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 13 . 10 2 . 18 . . 15 3 9 . . . 6 4 3 . 3 . 5 5 . 10 . . 9 6 9 . . . 7 7 3 . 5 . 5 site 2 2 1 . 4 Weighted motif model: POS A C G T Prob 1 0.122335 0.174326 0.675227 0.028111 0.967123 2 0.028292 0.832633 0.110964 0.028111 1.475386 3 0.717947 0.017586 0.173660 0.090807 0.627119 4 0.498511 0.111630 0.361748 0.028111 0.499891 5 0.341771 0.613197 0.016920 0.028111 0.911018 6 0.717947 0.205674 0.048268 0.028111 0.692798 7 0.467163 0.048934 0.424444 0.059459 0.540115 Conservedness in bits: 5.713450 Conservedness in prob: 10.189357 Concensus sequence: GCAGCAG Complete log-likelihood ratio = 215 bits Missing position information = 178 bits Log-likelihood ratio statistic = 36 bits Degrees of freedom = 21 Information per parameter = 1.75 bits MOTIF J 1-1 710 taatcagttt TCATTCT actatTTTCT 716 1.000000 2-1 435 ttggtttgtg CCGTTCT gcacgttttc 441 1.000000 3-1 47 aaaatatgaa TCATACT aagtggtgga 53 1.000000 4-1 385 attcattacc TCCTATT tcctctGCAG 391 1.000000 5-1 543 TTTTtgaaag TCCTTCT cgctttagga 549 1.000000 6-1 735 atcattttct TTCTTCT aatagctagt 741 1.000000 7-1 401 aacgaattta TCCTTAT gtATGTTCTT 407 1.000000 8-1 448 accatttttg TTCTTAT ttactctcta 454 1.000000 9-1 274 cataaacgta TCATTGT tcctttccct 280 1.000000 10-1 176 caacagaatt TCGTTTT gtagtatagt 182 1.000000 11-1 382 gaacctcgca TCCTTCA gtaaTTTTTT 388 1.000000 12-1 369 aaactcacct TCATTGT tgctTTATTT 375 1.000000 13-1 786 atttgaattg TCTTGTT caccaagg 792 1.000000 14-1 397 tccccgatta TCATTGT cagcaatttc 403 1.000000 15-1 338 aAAAAGAAAt TCCTTCT ttgggtgttg 344 1.000000 16-1 652 ctagtataaa TTGTTGT AAAACTGaca 658 1.000000 17-1 481 cagccaccca ATCTACA tttagggtac 487 1.000000 18-1 719 tgaacaaatt TTCTATA tataaacact 725 1.000000 19-1 755 tttatctttt TTCCTTT aagagcagga 761 1.000000 20-1 329 cacaccagat TTCTTGT aaggcaatca 335 1.000000 21-1 570 ctgggccacg TCCTTTT ggaacccgtc 576 1.000000 22-1 261 tactgctagt TCATTCT gagcggagat 267 1.000000 23-1 654 cctattgtta ACGTTTT tttTTTTTTT 660 1.000000 24-1 344 ttttgccttg TCCTTCT ttgtttcaag 350 1.000000 25-1 703 taggtagcaa TGGTTCT tctataaaag 709 1.000000 26-1 267 ctgagggatc TCATTCT gagatACAAC 273 1.000000 27-1 722 tatacatttc TTCTTCT tcttctctct 728 1.000000 28-1 295 gctgatacca TCCTTTT attctctaca 301 1.000000 29-1 502 TTCTTTTctt TCCTTCA aggttctttg 508 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 710 716 713 -w 1.000000 >2 435 441 438 -w 1.000000 >3 47 53 50 -w 1.000000 >4 385 391 388 -w 1.000000 >5 543 549 546 -w 1.000000 >6 735 741 738 -w 1.000000 >7 401 407 404 -w 1.000000 >8 448 454 451 -w 1.000000 >9 274 280 277 -w 1.000000 >10 176 182 179 -w 1.000000 >11 382 388 385 -w 1.000000 >12 369 375 372 -w 1.000000 >13 786 792 789 -w 1.000000 >14 397 403 400 -w 1.000000 >15 338 344 341 -w 1.000000 >16 652 658 655 -w 1.000000 >17 481 487 484 -w 1.000000 >18 719 725 722 -w 1.000000 >19 755 761 758 -w 1.000000 >20 329 335 332 -w 1.000000 >21 570 576 573 -w 1.000000 >22 261 267 264 -w 1.000000 >23 654 660 657 -w 1.000000 >24 344 350 347 -w 1.000000 >25 703 709 706 -w 1.000000 >26 267 273 270 -w 1.000000 >27 722 728 725 -w 1.000000 >28 295 301 298 -w 1.000000 >29 502 508 505 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 84 0.9 2 . 64 . . 0.9 3 . 52 . . 0.5 4 . . . 91 1.2 5 . . . 78 0.7 6 . 46 . . 0.3 7 . . . 81 0.9 non- site . 19 . 30 site . 25 . 59 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 12 9 2 . 11 . . 9 3 . 7 . . 5 4 . . . 14 12 5 . . . 10 7 6 . 6 . . 3 7 . . . 11 9 site . 1 . 6 4 Weighted motif model: POS A C G T Prob 1 0.090987 0.048934 0.016920 0.843158 0.903181 2 0.028292 0.644545 0.048268 0.278895 0.885755 3 0.247727 0.519154 0.173660 0.059459 0.499057 4 0.028292 0.048934 0.016920 0.905854 1.151197 5 0.153683 0.017586 0.048268 0.780462 0.731188 6 0.090987 0.456458 0.173660 0.278895 0.345016 7 0.153683 0.017586 0.016920 0.811810 0.854629 Conservedness in bits: 5.370024 Conservedness in prob: 10.125024 Concensus sequence: TCCTTCT Complete log-likelihood ratio = 199 bits Missing position information = 163 bits Log-likelihood ratio statistic = 36 bits Degrees of freedom = 21 Information per parameter = 1.74 bits seed 1 time: 21 seconds (0.35 minutes) MOTIF A 1-1 691 agtttacgtt TGTTTTT aataatcagt 697 1.000000 2-1 720 ggacagtatg TGTTGTT tttatttcga 726 1.000000 3-1 645 agattttgtc TTTTTTT aCCTGGTATT 651 1.000000 4-1 724 cttcataaca TTATTTT tcggttccac 730 1.000000 5-1 528 ttttaaaact TTTTTTT tttgaaagtc 534 1.000000 6-1 585 atttttactt TTTTTTT ttttgTTTCT 591 1.000000 7-1 495 cttctttcct CTAGTTT agtgcagtcg 501 1.000000 8-1 432 tgatatttgt TTGTTTA ccaTTTTTGT 438 1.000000 9-1 222 ataatattac TGCATTT tctgtattaa 228 1.000000 10-1 456 tgcaggtgga TTTTTTT ggcagatact 462 1.000000 11-1 471 ctggatatga ATTATTT attaccaata 477 1.000000 12-1 184 cagAGGCAGT TTGGTTT gttcacacct 190 1.000000 13-1 773 aaccgctttc TTTATTT gaattgtctt 779 1.000000 14-1 396 atccccgatt ATCATTG tcagcaattt 402 1.000000 15-1 270 cctgcaaagt TTGTTTT tataattttg 276 1.000000 16-1 572 ttcagtgcat AAGATTA catttgtcgg 578 1.000000 17-1 152 aaacgaatct TTGATTG acgcaaagac 158 1.000000 18-1 717 cctgaacaaa TTTTCTA tatataaaca 723 1.000000 19-1 427 ataactttat TTTTTTT tattaattgg 433 1.000000 20-1 646 cTTTTTTTcc CTTTTTA cgcggaaagc 652 1.000000 21-1 705 GTttttgttt TTGTTTT gttttggttt 711 1.000000 22-1 769 ccatcgttga TTCTTTT tggtaagatc 775 1.000000 23-1 658 ttgttaacgt TTTTTTT ttttttttaa 664 1.000000 24-1 509 aaccataatg CTGTTTT agaatcgcat 515 1.000000 25-1 220 gagggagcgc TGGATTG gcattcaacg 226 1.000000 26-1 719 tcaagaatat TTCGTTT atcatatcca 725 1.000000 27-1 559 tgaaatttga TTTTCTT ggccaaacta 565 1.000000 28-1 323 cgaatttgtc TTTACTC ctatgctgtt 329 1.000000 29-1 326 tctcatcggt TTCGTTT gttgcttaaa 332 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 691 697 694 -w 1.000000 >2 720 726 723 -w 1.000000 >3 645 651 648 -w 1.000000 >4 724 730 727 -w 1.000000 >5 528 534 531 -w 1.000000 >6 585 591 588 -w 1.000000 >7 495 501 498 -w 1.000000 >8 432 438 435 -w 1.000000 >9 222 228 225 -w 1.000000 >10 456 462 459 -w 1.000000 >11 471 477 474 -w 1.000000 >12 184 190 187 -w 1.000000 >13 773 779 776 -w 1.000000 >14 396 402 399 -w 1.000000 >15 270 276 273 -w 1.000000 >16 572 578 575 -w 1.000000 >17 152 158 155 -w 1.000000 >18 717 723 720 -w 1.000000 >19 427 433 430 -w 1.000000 >20 646 652 649 -w 1.000000 >21 705 711 708 -w 1.000000 >22 769 775 772 -w 1.000000 >23 658 664 661 -w 1.000000 >24 509 515 512 -w 1.000000 >25 220 226 223 -w 1.000000 >26 719 725 722 -w 1.000000 >27 559 565 562 -w 1.000000 >28 323 329 326 -w 1.000000 >29 326 332 329 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 75 0.6 2 . . . 78 0.8 3 . . 27 47 0.2 4 . . . 56 0.3 5 . . . 81 0.9 6 . . . 94 1.3 7 . . . 69 0.5 non- site . . . 30 site . . . 75 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 6 2 . . . 10 8 3 . . 1 3 2 4 . . . 5 3 5 . . . 11 9 6 . . . 15 13 7 . . . 8 5 site . . . 10 6 Weighted motif model: POS A C G T Prob 1 0.122335 0.111630 0.016920 0.749114 0.644398 2 0.059639 0.017586 0.142312 0.780462 0.784353 3 0.090987 0.174326 0.267704 0.466983 0.230505 4 0.279075 0.017586 0.142312 0.561027 0.322340 5 0.028292 0.111630 0.048268 0.811810 0.850035 6 0.028292 0.017586 0.016920 0.937202 1.282005 7 0.153683 0.048934 0.110964 0.686418 0.453410 Conservedness in bits: 4.567047 Conservedness in prob: 8.208975 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 172 bits Missing position information = 135 bits Log-likelihood ratio statistic = 36 bits Degrees of freedom = 21 Information per parameter = 1.75 bits MOTIF B 1-1 342 taaccaaata TTTCGGGAT tatcttaagg 350 1.000000 2-1 598 aaaaaatcga TCTAGCTCA acagtccttt 606 1.000000 3-1 653 tcTTTTTTTa CCTGGTATT tcgcgtttat 661 1.000000 4-1 770 agaataaccc TTTGGAGGC aacatagata 778 1.000000 5-1 405 ATGAAAcgaa TTTTGACTT gatgagacga 413 1.000000 6-1 169 agaggttatt TTTTGACCT tggtttttcc 177 1.000000 7-1 726 TCctttttta TTTTGCCCT tagattgtat 734 1.000000 8-1 700 aataagtgaa TTTTGTGCC atagggttgg 708 1.000000 9-1 533 tacgtcttat TTTTGATTA tatgctcgac 541 1.000000 10-1 421 gaaaagtaga CTTCGCGTA acacgaaaaa 429 1.000000 11-1 539 aaattttgga TTTTGTGTT cgaaAAAGGG 547 1.000000 12-1 134 atcgtctagg TTTGGGGCT tgttggtatg 142 1.000000 13-1 555 acgctagttt TCTCGCACA tagtaccact 563 1.000000 14-1 295 AGCggttcta TTTCTGTTA acaagaaggt 303 1.000000 15-1 733 gaactcgatc TTTCGCTCC gaaacaccta 741 1.000000 16-1 363 ctctaattat TCTGGAGAT atgtggaccc 371 1.000000 17-1 222 TCTTttcttt TCTTTTCCT ttttttacaa 230 1.000000 18-1 765 gtatacatat TCTGGTTCA acaactgttt 773 1.000000 19-1 165 ggGCAATAAC TCCAATTCA aattcgagtt 173 1.000000 20-1 158 ggaacaccgc ACTCGGTCT accgtttatc 166 1.000000 21-1 475 tctatgagat GTTGGTGTT ggttatgtaa 483 1.000000 22-1 429 ATCAAAgtag CTTAGACCA cgtcctgcac 437 1.000000 23-1 756 tcataaactg TGTAGATTA gCAGCAGAca 764 1.000000 24-1 577 atgctcacta TTTCGGATT tacttctagt 585 1.000000 25-1 541 tgtgttagta TTTTGTGTT ttttacaaca 549 1.000000 26-1 296 agtgtagttg TTTGAGTAC gttaataagt 304 1.000000 27-1 730 tcttcttctt CTTCTCTCT tctttccttc 738 1.000000 28-1 180 ataatcgggc CTTATCATT tgattcaaga 188 1.000000 29-1 482 atattctctt TTTTGTTTT attcttttct 490 1.000000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 342 350 346 -w 1.000000 >2 598 606 602 -w 1.000000 >3 653 661 657 -w 1.000000 >4 770 778 774 -w 1.000000 >5 405 413 409 -w 1.000000 >6 169 177 173 -w 1.000000 >7 726 734 730 -w 1.000000 >8 700 708 704 -w 1.000000 >9 533 541 537 -w 1.000000 >10 421 429 425 -w 1.000000 >11 539 547 543 -w 1.000000 >12 134 142 138 -w 1.000000 >13 555 563 559 -w 1.000000 >14 295 303 299 -w 1.000000 >15 733 741 737 -w 1.000000 >16 363 371 367 -w 1.000000 >17 222 230 226 -w 1.000000 >18 765 773 769 -w 1.000000 >19 165 173 169 -w 1.000000 >20 158 166 162 -w 1.000000 >21 475 483 479 -w 1.000000 >22 429 437 433 -w 1.000000 >23 756 764 760 -w 1.000000 >24 577 585 581 -w 1.000000 >25 541 549 545 -w 1.000000 >26 296 304 300 -w 1.000000 >27 730 738 734 -w 1.000000 >28 180 188 184 -w 1.000000 >29 482 490 486 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 72 0.6 2 . 27 . 66 0.6 3 . . . 91 1.2 4 . 27 24 . 0.1 5 . . 74 . 1.1 8 . 43 . 40 0.4 9 . . . 53 0.3 non- site . . . 30 site . . . 54 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 9 6 2 . 1 . 7 6 3 . . . 14 12 4 . 1 1 . 1 5 . . 15 . 11 8 . 5 . 2 4 9 . . . 4 3 site . . . 4 3 Weighted motif model: POS A C G T Prob 1 0.059639 0.174326 0.048268 0.717766 0.609675 2 0.028292 0.268370 0.048268 0.655071 0.644329 3 0.028292 0.048934 0.016920 0.905854 1.151197 4 0.185031 0.268370 0.236356 0.310243 0.070901 5 0.090987 0.017586 0.737923 0.153503 1.089065 8 0.122335 0.425110 0.048268 0.404287 0.380453 9 0.310423 0.142978 0.016920 0.529679 0.289253 Conservedness in bits: 4.234872 Conservedness in prob: 8.220344 Concensus sequence: TTTCGCT Complete log-likelihood ratio = 157 bits Missing position information = 130 bits Log-likelihood ratio statistic = 26 bits Degrees of freedom = 21 Information per parameter = 1.26 bits MOTIF C 1-1 720 tcattctact ATTTTCTTGC GCAATTGCtt 729 1.000000 2-1 477 gatcgtgttg TTATTCACGG caaccattgc 486 1.000000 3-1 90 tctaaactaa TTGTTCAGGC atttatactt 99 1.000000 4-1 309 tgaaacgcgc TAATTGCATC agcctatctt 318 1.000000 5-1 51 gaaaaaccga TCTTTAACGC caagaccatt 60 1.000000 6-1 188 tggtttttcc TTCTTTTCGC cgtactcagc 197 1.000000 7-1 666 tctactaaga TCTTTAAAGC aattcctttc 675 1.000000 8-1 202 cgctttggct TGTTCTAAGG ttgttttgaa 211 1.000000 9-1 387 cttgtcaaat TCTTCCGTGC taccacgttg 396 1.000000 10-1 52 acagctcgtg TTCTTCTTGC agcacatcag 61 1.000000 11-1 356 tgttggacgg TTGTCCGCGC gagttcgaac 365 1.000000 12-1 369 aaactcacct TCATTGTTGC tttatttttc 378 1.000000 13-1 503 attgaacaac TCTTCGCGGT caggtctcga 512 1.000000 14-1 538 cagcttatct TAATTTTCGC caataggttt 547 1.000000 15-1 363 TGTGTattgc TACTTTGGGC aggcgcgacc 372 1.000000 16-1 454 atttgattta TACTTGTTTC agatcctttg 463 1.000000 17-1 339 aatgagaaac TTTTTGATGC ctactctttt 348 1.000000 18-1 593 GCataagagc AACTCACTGC aaagGGAATT 602 1.000000 19-1 20 agcaatacaa TCAACAAGGC caaaacaacC 29 1.000000 20-1 73 atgtgactgt TCATTATTGC aatggggcgg 82 1.000000 21-1 391 tctctggtgg TATTTGTAGC ttgttgggcc 400 1.000000 22-1 611 gcccagcggt TAATCTACGC agttgcgtat 620 1.000000 23-1 394 TTttcacttc TACTTAAATC ggagttacaa 403 1.000000 24-1 418 ccgtacggcg TTGTCAAAAC ctcgaacata 427 1.000000 25-1 243 aacgccagta TTTTTCCTGC ggatactgtg 252 1.000000 26-1 665 tGTGACAAAa TTGTTTCTGC ctccaacggt 674 1.000000 27-1 322 cagaacaccc TTTTTATAGC cactatcggt 331 1.000000 28-1 303 catcctttta TTCTCTACAC cgaatttgtc 312 1.000000 29-1 370 acgataacgg TTCTTTCTGC atattccgat 379 1.000000 sites: ** ** *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 720 729 724 -w 1.000000 >2 477 486 481 -w 1.000000 >3 90 99 94 -w 1.000000 >4 309 318 313 -w 1.000000 >5 51 60 55 -w 1.000000 >6 188 197 192 -w 1.000000 >7 666 675 670 -w 1.000000 >8 202 211 206 -w 1.000000 >9 387 396 391 -w 1.000000 >10 52 61 56 -w 1.000000 >11 356 365 360 -w 1.000000 >12 369 378 373 -w 1.000000 >13 503 512 507 -w 1.000000 >14 538 547 542 -w 1.000000 >15 363 372 367 -w 1.000000 >16 454 463 458 -w 1.000000 >17 339 348 343 -w 1.000000 >18 593 602 597 -w 1.000000 >19 20 29 24 -w 1.000000 >20 73 82 77 -w 1.000000 >21 391 400 395 -w 1.000000 >22 611 620 615 -w 1.000000 >23 394 403 398 -w 1.000000 >24 418 427 422 -w 1.000000 >25 243 252 247 -w 1.000000 >26 665 674 669 -w 1.000000 >27 322 331 326 -w 1.000000 >28 303 312 307 -w 1.000000 >29 370 379 374 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.0 2 . 24 . 44 0.1 4 . . . 91 1.1 5 . 30 . 66 0.7 8 . 24 . 37 0.0 9 . . 77 . 1.2 10 . 83 . . 1.4 non- site . 19 . 30 site . 24 . 50 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 10 2 . 1 . 2 1 4 . . . 14 11 5 . 2 . 7 7 8 . 1 . 1 0 9 . . 16 . 12 10 . 18 . . 14 site . 1 . 4 2 Weighted motif model: POS A C G T Prob 1 0.090987 0.017586 0.016920 0.874506 1.030802 2 0.279075 0.237022 0.048268 0.435635 0.147013 4 0.059639 0.017586 0.016920 0.905854 1.143116 5 0.028292 0.299718 0.016920 0.655071 0.742352 8 0.247727 0.237022 0.142312 0.372939 0.033632 9 0.090987 0.017586 0.769271 0.122155 1.188951 10 0.028292 0.832633 0.079616 0.059459 1.416458 Conservedness in bits: 5.702324 Conservedness in prob: 9.073965 Concensus sequence: TTTTCGC Complete log-likelihood ratio = 211 bits Missing position information = 168 bits Log-likelihood ratio statistic = 43 bits Degrees of freedom = 21 Information per parameter = 2.05 bits MOTIF D 1-1 789 Attcggtgta GAGAATAA aagg 796 1.000000 2-1 52 gtttgattat GAAAGCAA cccggaaggt 59 1.000000 3-1 559 catgaggaat AAGGGCAT tcagtaccga 566 1.000000 4-1 475 aataagggca GAAATTAA tcaaatttat 482 1.000000 5-1 629 aagtagcaat GAAACGAA ccaagaaaat 636 1.000000 6-1 41 tagttgagaa AAAAACCG GAAAGGAATt 48 1.000000 7-1 188 gagttccagg GTGAAACA gatctaaaac 195 1.000000 8-1 656 AAGCaacttt GAAACACA actacgacat 663 1.000000 9-1 731 AAGAAAActg GAAAAAGG gaaggggcta 738 1.000000 10-1 267 acatttctga GTGAGAAT gccagctgaa 274 1.000000 11-1 615 ttggaaaaat AAAAATAA aaagtggtct 622 1.000000 12-1 116 tcttgaccaa GTTAGAAG atcgtctagg 123 1.000000 13-1 434 tgttttaaaa GAAACGAA tttgcaacat 441 1.000000 14-1 721 aacatgtaaa GCAAAAAA ctagaacact 728 1.000000 15-1 611 tcgcatccga AAAAGAAA ctgaaaatgt 618 1.000000 16-1 181 ccagtcaaaa AAGACAAG tttaagcgaa 188 1.000000 17-1 311 tcttaatttt AACAGCAG ttaccacttg 318 1.000000 18-1 436 tagggctctc AAAAATAG tgagagaaat 443 1.000000 19-1 642 tctgtaattt GAAACAAA taacgtaatt 649 1.000000 20-1 693 aagccaaacc AAAATAAA tcaaaccaaa 700 1.000000 21-1 776 cgctttccgc GTAAAAAG ggaaaAAAAG 783 1.000000 22-1 652 tcacacttgc AAAAAGCA tataaaaagc 659 1.000000 23-1 455 attatgctaa GAAAGTAG aggcgacgat 462 1.000000 24-1 16 agcaactcca GAGAAAAA gccAAAGGAA 23 1.000000 25-1 179 aaaaagagat GAAAGTAA gatatgggaa 186 1.000000 26-1 656 tgcccatctt GTGACAAA aTTGTTTCTG 663 1.000000 27-1 410 aacccttggt GAAACGAA atttgataca 417 1.000000 28-1 532 acaaaagagc GAAAGGCG atataaaTTT 539 1.000000 29-1 256 AAAAAAAAAA AAAAAAAA aatgttctca 263 1.000000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 789 796 792 -w 1.000000 >2 52 59 55 -w 1.000000 >3 559 566 562 -w 1.000000 >4 475 482 478 -w 1.000000 >5 629 636 632 -w 1.000000 >6 41 48 44 -w 1.000000 >7 188 195 191 -w 1.000000 >8 656 663 659 -w 1.000000 >9 731 738 734 -w 1.000000 >10 267 274 270 -w 1.000000 >11 615 622 618 -w 1.000000 >12 116 123 119 -w 1.000000 >13 434 441 437 -w 1.000000 >14 721 728 724 -w 1.000000 >15 611 618 614 -w 1.000000 >16 181 188 184 -w 1.000000 >17 311 318 314 -w 1.000000 >18 436 443 439 -w 1.000000 >19 642 649 645 -w 1.000000 >20 693 700 696 -w 1.000000 >21 776 783 779 -w 1.000000 >22 652 659 655 -w 1.000000 >23 455 462 458 -w 1.000000 >24 16 23 19 -w 1.000000 >25 179 186 182 -w 1.000000 >26 656 663 659 -w 1.000000 >27 410 417 413 -w 1.000000 >28 532 539 535 -w 1.000000 >29 256 263 259 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 61 . 0.9 2 75 . . . 0.7 3 66 . 24 . 0.5 4 91 . . . 1.1 5 37 24 30 . 0.2 7 75 . . . 0.7 8 59 . 30 . 0.5 non- site 31 . 18 . site 65 . 22 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 11 . 9 2 9 . . . 7 3 7 . 1 . 5 4 14 . . . 11 5 1 1 2 . 2 7 9 . . . 7 8 6 . 2 . 5 site 7 . 1 . 5 Weighted motif model: POS A C G T Prob 1 0.341771 0.017586 0.612531 0.028111 0.940768 2 0.749295 0.048934 0.016920 0.184851 0.657065 3 0.655251 0.048934 0.236356 0.059459 0.546857 4 0.906034 0.017586 0.048268 0.028111 1.144756 5 0.373119 0.237022 0.299052 0.090807 0.211205 7 0.749295 0.174326 0.048268 0.028111 0.732442 8 0.592555 0.017586 0.299052 0.090807 0.533761 Conservedness in bits: 4.766854 Conservedness in prob: 8.482960 Concensus sequence: GAAAGAA Complete log-likelihood ratio = 180 bits Missing position information = 125 bits Log-likelihood ratio statistic = 54 bits Degrees of freedom = 21 Information per parameter = 2.59 bits MOTIF E 1-1 543 aaatcccgtg AAAAAAA tttatatcgc 549 1.000000 2-1 355 gcgtaagtct CAAAAAA aaattgggtt 361 1.000000 3-1 779 aataggtaac TAACAAC tcaattgaat 785 1.000000 4-1 706 acatactgct CAAAAAA tcttcataac 712 1.000000 5-1 786 aacaaacaaa AAAAAAA aaaaaaaa 792 1.000000 6-1 212 ctcagcccga GAAAAAA gcagcgactg 218 1.000000 7-1 139 atgCAGAAAC AAAAAAA aaAAAAGTAA 145 1.000000 8-1 509 tagctcgtat CAAAATA aaactagtca 515 1.000000 9-1 721 acaaaagaaa AAGAAAA ctgGAAAAAG 727 1.000000 10-1 345 gatatcgcat AAAAAAA tggccagcta 351 1.000000 11-1 569 AGattgctcc AAACGCA aataaggagg 575 1.000000 12-1 316 acaggatgaa AAAAAAA agacattGCA 322 1.000000 13-1 744 tcgtcgaaga AAACACA cttttatagc 750 1.000000 14-1 332 gtgataactc AAAAAAC aagagtacaa 338 1.000000 15-1 329 atattccaga AAAAGAA attccttctt 335 1.000000 16-1 608 tccattacgg CAAAACA gaactgaaac 614 1.000000 17-1 788 ctaaaaaaac CAAAAAA tttcag 794 1.000000 18-1 207 ctatttttat CAAAAAA gtattaacat 213 1.000000 19-1 81 tcagcatcaa CAACAGG gtcagcagca 87 1.000000 20-1 719 aaccaaaaca AAACAAA aacAAAAACA 725 1.000000 21-1 789 AAAAGggaaa AAAAGCA gatat 795 1.000000 22-1 418 gtgactatct TATCAAA gtagCTTAGA 424 1.000000 23-1 434 aaaaatcaag AAAAAAA cctgattatg 440 1.000000 24-1 254 attcttacgt AAAAAAA tacttacaga 260 1.000000 25-1 652 taactaaatg CAAAAAA aaaaatgatt 658 1.000000 26-1 550 ccacaccttt AAAAAAA accaagaacg 556 1.000000 27-1 147 gctatctcat CAAAACA gtgcgggtta 153 1.000000 28-1 399 actgattatt AAAAACA aacgtaaaCT 405 1.000000 29-1 240 aaaccggcca AAAAAAA AAAAAAAAAA 246 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 543 549 546 -w 1.000000 >2 355 361 358 -w 1.000000 >3 779 785 782 -w 1.000000 >4 706 712 709 -w 1.000000 >5 786 792 789 -w 1.000000 >6 212 218 215 -w 1.000000 >7 139 145 142 -w 1.000000 >8 509 515 512 -w 1.000000 >9 721 727 724 -w 1.000000 >10 345 351 348 -w 1.000000 >11 569 575 572 -w 1.000000 >12 316 322 319 -w 1.000000 >13 744 750 747 -w 1.000000 >14 332 338 335 -w 1.000000 >15 329 335 332 -w 1.000000 >16 608 614 611 -w 1.000000 >17 788 794 791 -w 1.000000 >18 207 213 210 -w 1.000000 >19 81 87 84 -w 1.000000 >20 719 725 722 -w 1.000000 >21 789 795 792 -w 1.000000 >22 418 424 421 -w 1.000000 >23 434 440 437 -w 1.000000 >24 254 260 257 -w 1.000000 >25 652 658 655 -w 1.000000 >26 550 556 553 -w 1.000000 >27 147 153 150 -w 1.000000 >28 399 405 402 -w 1.000000 >29 240 246 243 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 56 30 . . 0.4 2 94 . . . 1.3 3 87 . . . 1.0 4 75 . . . 0.8 5 84 . . . 1.0 6 69 . . . 0.6 7 84 . . . 0.9 non- site 31 . . . site 83 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 5 2 . . 4 2 15 . . . 13 3 13 . . . 10 4 9 . . . 8 5 12 . . . 10 6 8 . . . 6 7 12 . . . 9 site 12 . . . 9 Weighted motif model: POS A C G T Prob 1 0.561207 0.299718 0.048268 0.090807 0.412205 2 0.937382 0.017586 0.016920 0.028111 1.274533 3 0.874687 0.017586 0.048268 0.059459 1.007808 4 0.749295 0.205674 0.016920 0.028111 0.812251 5 0.843339 0.017586 0.110964 0.028111 0.972039 6 0.686599 0.205674 0.048268 0.059459 0.566583 7 0.843339 0.080282 0.048268 0.028111 0.919828 Conservedness in bits: 5.965247 Conservedness in prob: 9.218043 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 226 bits Missing position information = 164 bits Log-likelihood ratio statistic = 62 bits Degrees of freedom = 21 Information per parameter = 2.96 bits MOTIF F 1-1 771 gcataggagt AAAGACAAA ttcggtgtaG 779 1.000000 2-1 790 gatctcgcct AATTGAAAG ag 798 1.000000 3-1 369 gacaccgttc AAACACAAG tggcagcttt 377 1.000000 4-1 80 aGCACTAGCt AACGCTACG tggaatgaac 88 1.000000 5-1 392 gtttttgtag AACATGAAA cgaaTTTTGA 400 1.000000 6-1 49 aaAAAAACCG GAAAGGAAT tgctttaaag 57 1.000000 7-1 148 CAAAAAAAaa AAAAGTAAA aatttcgagt 156 1.000000 8-1 382 aactttcatt GAAAATTAG acagtcatgt 390 1.000000 9-1 339 acgaccttga AACGAAAAA ccgttccttg 347 1.000000 10-1 117 ttacaacgag AATATTTAG gaattttgct 125 1.000000 11-1 552 TGTGTTcgaa AAAGGGAAG attgctccAA 560 1.000000 12-1 24 ttattgggcc GACGGAAAG ttacaaagta 32 1.000000 13-1 403 tctcaataga AAAAGTGAA acagataaaa 411 1.000000 14-1 60 atgtgtcatc AATACCACG tttattgttg 68 1.000000 15-1 43 tttagcgctt AACATTACA tacaccttta 51 1.000000 16-1 59 agcaaattga AAACGATAA agaactagcc 67 1.000000 17-1 611 aaacaatatt AAAACATAG taatgactta 619 1.000000 18-1 165 gaaaatccaa TAACGCAAA acgggctgtg 173 1.000000 19-1 621 tgatgaaaca AACATGAAA cgtctgtaat 629 1.000000 20-1 729 AAACAAAaac AAAAACAAA aacaggctaa 737 1.000000 21-1 23 ggtcgccctg GACGGTAAG cacgtgctca 31 1.000000 22-1 81 gccactcctc AACAGAAAA ccgtgctcgc 89 1.000000 23-1 621 gaattcgcca AACGACAAA aactggagga 629 1.000000 24-1 27 AGAAAAAgcc AAAGGAAAA tccttgggcc 35 1.000000 25-1 264 gatactgtga AATCAGTAA tgcaaactga 272 1.000000 26-1 319 ataagtattt AAAAGAAAA gagacgaacc 327 1.000000 27-1 250 ggctggaaca GAAGTCAAA tgaggatgac 258 1.000000 28-1 575 cgtttaggtg AAAATAAAA tgaacgacag 583 1.000000 29-1 247 ccaAAAAAAA AAAAAAAAA AAAAAAAAaa 255 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 771 779 775 -w 1.000000 >2 790 798 794 -w 1.000000 >3 369 377 373 -w 1.000000 >4 80 88 84 -w 1.000000 >5 392 400 396 -w 1.000000 >6 49 57 53 -w 1.000000 >7 148 156 152 -w 1.000000 >8 382 390 386 -w 1.000000 >9 339 347 343 -w 1.000000 >10 117 125 121 -w 1.000000 >11 552 560 556 -w 1.000000 >12 24 32 28 -w 1.000000 >13 403 411 407 -w 1.000000 >14 60 68 64 -w 1.000000 >15 43 51 47 -w 1.000000 >16 59 67 63 -w 1.000000 >17 611 619 615 -w 1.000000 >18 165 173 169 -w 1.000000 >19 621 629 625 -w 1.000000 >20 729 737 733 -w 1.000000 >21 23 31 27 -w 1.000000 >22 81 89 85 -w 1.000000 >23 621 629 625 -w 1.000000 >24 27 35 31 -w 1.000000 >25 264 272 268 -w 1.000000 >26 319 327 323 -w 1.000000 >27 250 258 254 -w 1.000000 >28 575 583 579 -w 1.000000 >29 247 255 251 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 75 . . . 0.7 2 94 . . . 1.3 3 53 30 . . 0.4 4 50 . 30 . 0.3 7 75 . . . 0.7 8 84 . . . 1.0 9 59 . 33 . 0.6 non- site 31 . . . site 73 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . . . 7 2 15 . . . 13 3 4 2 . . 4 4 3 . 2 . 3 7 9 . . . 7 8 12 . . . 10 9 6 . 3 . 6 site 9 . . . 6 Weighted motif model: POS A C G T Prob 1 0.749295 0.017586 0.173660 0.059459 0.730216 2 0.937382 0.017586 0.016920 0.028111 1.274533 3 0.529859 0.299718 0.016920 0.153503 0.382479 4 0.498511 0.142978 0.299052 0.059459 0.339667 7 0.749295 0.017586 0.048268 0.184851 0.657816 8 0.843339 0.111630 0.016920 0.028111 0.968591 9 0.592555 0.017586 0.330400 0.059459 0.621817 Conservedness in bits: 4.975119 Conservedness in prob: 7.945286 Concensus sequence: AAAGAAA Complete log-likelihood ratio = 189 bits Missing position information = 136 bits Log-likelihood ratio statistic = 53 bits Degrees of freedom = 21 Information per parameter = 2.53 bits MOTIF G 1-1 643 ataacggacg TTTTTCAC gtactccgtc 650 1.000000 2-1 218 accaccattt TTTTTTGC tccaaaggcg 225 1.000000 3-1 712 atcacatcga TTTTGGTC tacctataaa 719 1.000000 4-1 427 attataaagg TCTTTAGC gtgagaggta 434 1.000000 5-1 717 tgttaaatgt TTTTTATC tcaggttctt 724 1.000000 6-1 107 ctcgcctcct TTTTTTGT gcttcttgag 114 1.000000 7-1 710 actaccgtac TCTTTTTC cttttttaTT 717 1.000000 8-1 757 ttttaatatt TGTTTTGG catttgaaac 764 1.000000 9-1 592 cttttagcac TTTCTCTC tcaccctttc 599 1.000000 10-1 546 ggaagagatc TATTGTTC ccgcagacac 553 1.000000 11-1 36 tattacttct TCTTTGTT ttatgtgttg 43 1.000000 12-1 659 aaactatcct TTTTGTTC actctgtctt 666 1.000000 13-1 601 agattacttc TTTTTAGT tgactttttt 608 1.000000 14-1 238 aaaagcgagt TTTTGATT tagaaacacc 245 1.000000 15-1 512 agatgttgcc TATTTCTC gaggaaacgc 519 1.000000 16-1 275 tgttcacttg TTTTTATC gtatatcctc 282 1.000000 17-1 208 atatgtaaca TTTTTCTT ttctttTCTT 215 1.000000 18-1 51 tcatagcaga TCTTGCAC ccataataga 58 1.000000 19-1 671 tcgggattgg TTTTATTT aaatgacaat 678 1.000000 20-1 610 tgaacatctc TGTCTTTT ctgttgtaca 617 1.000000 21-1 731 tggtttgatt TATTTTGG tttggcttaa 738 1.000000 22-1 361 ctaggccctg TGTTGTGG cttttttcgg 368 1.000000 23-1 378 taacagggta TTTTTTTT ttcacttcTA 385 1.000000 24-1 386 tctacagtat TATTTTTC aacagacggt 393 1.000000 25-1 787 tacgcaaaca TTTTTGGC taccgg 794 1.000000 26-1 187 catgttgccc ATTTTGTT cGCTTTGTta 194 1.000000 27-1 665 aacacttaca TTTTGAGG cctaccggac 672 1.000000 28-1 755 aatcccgaaa TATTTGGT taggatgatt 762 1.000000 29-1 547 ttacaaacaa CTTTGCGC cagttccCGC 554 1.000000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 643 650 646 -w 1.000000 >2 218 225 221 -w 1.000000 >3 712 719 715 -w 1.000000 >4 427 434 430 -w 1.000000 >5 717 724 720 -w 1.000000 >6 107 114 110 -w 1.000000 >7 710 717 713 -w 1.000000 >8 757 764 760 -w 1.000000 >9 592 599 595 -w 1.000000 >10 546 553 549 -w 1.000000 >11 36 43 39 -w 1.000000 >12 659 666 662 -w 1.000000 >13 601 608 604 -w 1.000000 >14 238 245 241 -w 1.000000 >15 512 519 515 -w 1.000000 >16 275 282 278 -w 1.000000 >17 208 215 211 -w 1.000000 >18 51 58 54 -w 1.000000 >19 671 678 674 -w 1.000000 >20 610 617 613 -w 1.000000 >21 731 738 734 -w 1.000000 >22 361 368 364 -w 1.000000 >23 378 385 381 -w 1.000000 >24 386 393 389 -w 1.000000 >25 787 794 790 -w 1.000000 >26 187 194 190 -w 1.000000 >27 665 672 668 -w 1.000000 >28 755 762 758 -w 1.000000 >29 547 554 550 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.0 2 . . . 56 0.2 3 . . . 94 1.3 4 . . . 87 1.1 5 . . 27 66 0.6 7 . . 36 53 0.5 8 . 49 . . 0.5 non- site . . . 30 site . . . 71 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 10 2 . . . 5 2 3 . . . 15 13 4 . . . 13 11 5 . . 1 7 6 7 . . 3 4 5 8 . 7 . . 5 site . . . 9 6 Weighted motif model: POS A C G T Prob 1 0.059639 0.048934 0.016920 0.874506 1.013874 2 0.185031 0.142978 0.110964 0.561027 0.198207 3 0.028292 0.017586 0.016920 0.937202 1.282005 4 0.028292 0.080282 0.016920 0.874506 1.053330 5 0.059639 0.017586 0.267704 0.655071 0.646832 7 0.090987 0.017586 0.361748 0.529679 0.535838 8 0.028292 0.487806 0.142312 0.341591 0.546993 Conservedness in bits: 5.277078 Conservedness in prob: 8.834856 Concensus sequence: TTTTTGC Complete log-likelihood ratio = 200 bits Missing position information = 150 bits Log-likelihood ratio statistic = 50 bits Degrees of freedom = 21 Information per parameter = 2.39 bits MOTIF H 1-1 212 tcagcattgc TAGCAGC aaaaccaaag 218 1.000000 2-1 631 aattacatat CGGAAGC ccacaaataa 637 1.000000 3-1 60 tactaagtgg TGGAAGC gcggaatctc 66 1.000000 4-1 544 ctaggtgata TTGAGGC ttttgtacaa 550 1.000000 5-1 199 ctgaaatttc CGCCAGA agaaacgcta 205 1.000000 6-1 483 ttttatcttt CTGAAGT aaaatgtgat 489 1.000000 7-1 132 tgagagaatg CAGAAAC AAAAAAAaaA 138 1.000000 8-1 643 ttccgtttgg CTGAAGC aactttGAAA 649 1.000000 9-1 422 actgatatga AACAAGT acgatccctg 428 1.000000 10-1 316 cacggcattc CAGCTGT aaaaaaccag 322 1.000000 11-1 330 tggtctaagg CGGCAGA cttaagatct 336 1.000000 12-1 177 tggtgaacag AGGCAGT TTGGTTTgtt 183 1.000000 13-1 152 acgaacgtta AGGAACC cataaagcta 158 1.000000 14-1 2 g CAGAAGT atcactaaca 8 1.000000 15-1 694 attgctactg CTCAAGA gagcttcttt 700 1.000000 16-1 200 ttaagcgaag AAGCAGC cttctcaatG 206 1.000000 17-1 468 ttaaagatct CAGCAGC cacccaatct 474 1.000000 18-1 578 attaaaaaaa AGGCAGC ataagagcAA 584 1.000000 19-1 39 Ccaaaacaac CAGCAGC aataccagca 45 1.000000 20-1 292 gaggcacacg CAGAAGC tagatacttc 298 1.000000 21-1 290 cacgctgttg CAGCAGC gagtccagct 296 1.000000 22-1 485 ttgttgttat TAGCAGC ggaataTCTT 491 1.000000 23-1 766 TGTAGATTAg CAGCAGA cactccTTTT 772 1.000000 24-1 186 gtctcttccc CAGCAAT tatgtgtctt 192 1.000000 25-1 420 gagactcttt CTGCACT ttaaatacaa 426 1.000000 26-1 511 tgaattatcc AAGAAAC gtgcggcagg 517 1.000000 27-1 483 agacggggcc CAGCAGT ctttttttag 489 1.000000 28-1 414 CAaacgtaaa CTCAAGC ctcacttgat 420 1.000000 29-1 562 CGCcagttcc CGCCTGC ttattctttt 568 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 212 218 215 -w 1.000000 >2 631 637 634 -w 1.000000 >3 60 66 63 -w 1.000000 >4 544 550 547 -w 1.000000 >5 199 205 202 -w 1.000000 >6 483 489 486 -w 1.000000 >7 132 138 135 -w 1.000000 >8 643 649 646 -w 1.000000 >9 422 428 425 -w 1.000000 >10 316 322 319 -w 1.000000 >11 330 336 333 -w 1.000000 >12 177 183 180 -w 1.000000 >13 152 158 155 -w 1.000000 >14 2 8 5 -w 1.000000 >15 694 700 697 -w 1.000000 >16 200 206 203 -w 1.000000 >17 468 474 471 -w 1.000000 >18 578 584 581 -w 1.000000 >19 39 45 42 -w 1.000000 >20 292 298 295 -w 1.000000 >21 290 296 293 -w 1.000000 >22 485 491 488 -w 1.000000 >23 766 772 769 -w 1.000000 >24 186 192 189 -w 1.000000 >25 420 426 423 -w 1.000000 >26 511 517 514 -w 1.000000 >27 483 489 486 -w 1.000000 >28 414 420 417 -w 1.000000 >29 562 568 565 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 61 . . 0.7 2 50 . 27 . 0.3 3 . . 77 . 1.4 4 44 52 . . 0.8 5 84 . . . 0.9 6 . . 77 . 1.2 7 . 55 . . 0.6 non- site . 19 18 . site . 29 28 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 10 . . 7 2 3 . 1 . 3 3 . . 16 . 14 4 2 7 . . 8 5 12 . . . 9 6 . . 16 . 12 7 . 8 . . 6 site . 2 2 . 2 Weighted motif model: POS A C G T Prob 1 0.216379 0.613197 0.016920 0.153503 0.693527 2 0.498511 0.017586 0.267704 0.216199 0.306787 3 0.028292 0.174326 0.769271 0.028111 1.353595 4 0.435815 0.519154 0.016920 0.028111 0.795340 5 0.843339 0.017586 0.048268 0.090807 0.897574 6 0.122335 0.080282 0.769271 0.028111 1.210993 7 0.153683 0.550502 0.016920 0.278895 0.574090 Conservedness in bits: 5.831905 Conservedness in prob: 10.809913 Concensus sequence: CAGCAGC Complete log-likelihood ratio = 217 bits Missing position information = 161 bits Log-likelihood ratio statistic = 55 bits Degrees of freedom = 21 Information per parameter = 2.65 bits MOTIF I 1-1 730 ATTTTCTTGC GCAATTGC ttatcagata 737 1.000000 2-1 117 ctagccactc GCTAACGC aaaaattatc 124 1.000000 3-1 393 gcttttctcg AGAACAGC aatgcccaca 400 1.000000 4-1 71 ccttgtggca GCACTAGC tAACGCTACG 78 1.000000 5-1 167 aatgttgaca GCAATGGC tcaaggttat 174 1.000000 6-1 515 tacaagcaat GCATAAGC tcttgagttt 522 1.000000 7-1 591 acagcatgat GCAACAGC tcaaaagacc 598 1.000000 8-1 160 atttctctgt GATAACGG ttgtgagggg 167 1.000000 9-1 189 gaggtggaag GCAAGAGT cttgattctt 196 1.000000 10-1 758 acctgatccg ACAAGAGC aatttcaata 765 1.000000 11-1 586 aataaggagg AAACCCGC tgattgcact 593 1.000000 12-1 330 AAAagacatt GCACTTGC atcactgtag 337 1.000000 13-1 80 aaagatatgt TGAAAAGC gacgggcaac 87 1.000000 14-1 280 cacgataacc TCTATAGC ggttctaTTT 287 1.000000 15-1 115 ccccagtcgt ACAAAAGC acctctgcat 122 1.000000 16-1 216 Ccttctcaat GCAAAAGC ttctgaaaaa 223 1.000000 17-1 85 atcttgagtt GCAAAAGG atgttgccag 92 1.000000 18-1 607 CACTGCaaag GGAATTGC gcattccacg 614 1.000000 19-1 157 tcctacctgg GCAATAAC TCCAATTCAa 164 1.000000 20-1 20 aagatctgtg GCACAAGT aggcggcatc 27 1.000000 21-1 193 acacgaagct GCAACAGC cgttcgtaca 200 1.000000 22-1 539 tcgttgcaag GAACGCGC gcgcacagaa 546 1.000000 23-1 248 tccatgatat GGAAAAAC gtataccagt 255 1.000000 24-1 752 tttaattata GGAAAAGC acactacaaa 759 1.000000 25-1 58 caggattgtg GCAAGGGC aatcgggcac 65 1.000000 26-1 92 actaaatgat GGAAGCGC ggaatctcgg 99 1.000000 27-1 217 atcaagccaa GGAAAGAC tacttttctt 224 1.000000 28-1 359 tatctgataa GCAATTGC gcaagaaaat 366 1.000000 29-1 518 aaggttcttt GCAACAGC actgaaaata 525 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 730 737 733 -w 1.000000 >2 117 124 120 -w 1.000000 >3 393 400 396 -w 1.000000 >4 71 78 74 -w 1.000000 >5 167 174 170 -w 1.000000 >6 515 522 518 -w 1.000000 >7 591 598 594 -w 1.000000 >8 160 167 163 -w 1.000000 >9 189 196 192 -w 1.000000 >10 758 765 761 -w 1.000000 >11 586 593 589 -w 1.000000 >12 330 337 333 -w 1.000000 >13 80 87 83 -w 1.000000 >14 280 287 283 -w 1.000000 >15 115 122 118 -w 1.000000 >16 216 223 219 -w 1.000000 >17 85 92 88 -w 1.000000 >18 607 614 610 -w 1.000000 >19 157 164 160 -w 1.000000 >20 20 27 23 -w 1.000000 >21 193 200 196 -w 1.000000 >22 539 546 542 -w 1.000000 >23 248 255 251 -w 1.000000 >24 752 759 755 -w 1.000000 >25 58 65 61 -w 1.000000 >26 92 99 95 -w 1.000000 >27 217 224 220 -w 1.000000 >28 359 366 362 -w 1.000000 >29 518 525 521 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 74 . 1.1 2 . 61 24 . 0.8 3 84 . . . 0.9 4 75 . . . 0.7 6 56 . . . 0.2 7 . . 83 . 1.5 8 . 80 . . 1.3 non- site 31 19 18 . site 37 26 30 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 15 . 11 2 . 10 1 . 8 3 12 . . . 9 4 9 . . . 7 6 5 . . . 2 7 . . 18 . 15 8 . 16 . . 13 site 1 1 2 . 3 Weighted motif model: POS A C G T Prob 1 0.153683 0.017586 0.737923 0.090807 1.088624 2 0.122335 0.613197 0.236356 0.028111 0.840047 3 0.843339 0.017586 0.016920 0.122155 0.929869 4 0.749295 0.174326 0.016920 0.059459 0.723705 6 0.561207 0.174326 0.110964 0.153503 0.213326 7 0.122335 0.017586 0.831967 0.028111 1.474411 8 0.028292 0.801285 0.079616 0.090807 1.286992 Conservedness in bits: 6.556974 Conservedness in prob: 11.418848 Concensus sequence: GCAAAGC Complete log-likelihood ratio = 241 bits Missing position information = 184 bits Log-likelihood ratio statistic = 56 bits Degrees of freedom = 21 Information per parameter = 2.71 bits MOTIF J 1-1 500 gactctgcat GCTCTGT cgttcatttt 506 1.000000 2-1 677 gatataaaag GCTTTGT cttgattcat 683 1.000000 3-1 446 gacgtggaga TTTTTTT atcccgcata 452 1.000000 4-1 646 aaaaatttgg TTTTTAT ttttttaagc 652 1.000000 5-1 692 cattggtata TATTTGT aaaatgtctg 698 1.000000 6-1 597 TTTTTttttg TTTCTGC attctctcag 603 1.000000 7-1 515 gcagtcgctg CTTTTTT ctcgggctga 521 1.000000 8-1 442 TTGTTTAcca TTTTTGT tcttatttac 448 1.000000 9-1 91 taagtagtat TCTTTAT gtgcattttt 97 1.000000 10-1 668 ttcttaagtg TTTTTTT ctttagtctt 674 1.000000 11-1 395 ttcagtaatt TTTTTTT ttaatttatt 401 1.000000 12-1 52 agcgagtttg TCGTTGC atctccaact 58 1.000000 13-1 132 caagttacat TCTTTGT ataacgaacg 138 1.000000 14-1 185 ctactttaga TCTTTTT agatcctttt 191 1.000000 15-1 351 ttctttgggt GTTGTGT attgcTACTT 357 1.000000 16-1 395 caggcgtgat TTTCTGT ctaaacattg 401 1.000000 17-1 546 ttgtaaagtc TCTTTTT ggatattgca 552 1.000000 18-1 678 cactagcggg TTGTTTT atcataattg 684 1.000000 19-1 546 tgcaggatgc CCTTTTT gacgtattga 552 1.000000 20-1 637 atatatctgc TTTTTTT ccCTTTTTAc 643 1.000000 21-1 690 gcttagcctg TTTTTGT ttttgtttTT 696 1.000000 22-1 498 CAGCggaata TCTTTGT ttactcatta 504 1.000000 23-1 779 CAGAcactcc TTTTTTT cttcatacta 785 1.000000 24-1 281 gacgttaaag CTTTTGT atagatactt 287 1.000000 25-1 395 aaacgctgca GTTTTTT acatctttga 401 1.000000 26-1 196 cATTTTGTTc GCTTTGT tataaagttg 202 1.000000 27-1 623 tatctcgggt TCATTTT ttacgtcggt 629 1.000000 28-1 547 GCGatataaa TTTTTTT cacgggattt 553 1.000000 29-1 297 atcaaaagct TATTTGT ttgttatctg 303 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 500 506 503 -w 1.000000 >2 677 683 680 -w 1.000000 >3 446 452 449 -w 1.000000 >4 646 652 649 -w 1.000000 >5 692 698 695 -w 1.000000 >6 597 603 600 -w 1.000000 >7 515 521 518 -w 1.000000 >8 442 448 445 -w 1.000000 >9 91 97 94 -w 1.000000 >10 668 674 671 -w 1.000000 >11 395 401 398 -w 1.000000 >12 52 58 55 -w 1.000000 >13 132 138 135 -w 1.000000 >14 185 191 188 -w 1.000000 >15 351 357 354 -w 1.000000 >16 395 401 398 -w 1.000000 >17 546 552 549 -w 1.000000 >18 678 684 681 -w 1.000000 >19 546 552 549 -w 1.000000 >20 637 643 640 -w 1.000000 >21 690 696 693 -w 1.000000 >22 498 504 501 -w 1.000000 >23 779 785 782 -w 1.000000 >24 281 287 284 -w 1.000000 >25 395 401 398 -w 1.000000 >26 196 202 199 -w 1.000000 >27 623 629 626 -w 1.000000 >28 547 553 550 -w 1.000000 >29 297 303 300 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 69 0.6 2 . 36 . 53 0.5 3 . . . 84 0.9 4 . . . 81 0.9 5 . . . 94 1.3 6 . . 46 44 0.6 7 . . . 87 1.1 non- site . . . 30 site . . . 77 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 8 6 2 . 3 . 4 5 3 . . . 12 9 4 . . . 11 9 5 . . . 15 13 6 . . 6 2 6 7 . . . 13 11 site . . . 10 8 Weighted motif model: POS A C G T Prob 1 0.028292 0.111630 0.173660 0.686418 0.585899 2 0.090987 0.362414 0.016920 0.529679 0.519553 3 0.059639 0.017586 0.079616 0.843158 0.919648 4 0.028292 0.111630 0.048268 0.811810 0.850035 5 0.028292 0.017586 0.016920 0.937202 1.282005 6 0.090987 0.017586 0.455792 0.435635 0.582089 7 0.028292 0.080282 0.016920 0.874506 1.053330 Conservedness in bits: 5.792558 Conservedness in prob: 9.287425 Concensus sequence: TCTTTGT Complete log-likelihood ratio = 220 bits Missing position information = 149 bits Log-likelihood ratio statistic = 70 bits Degrees of freedom = 21 Information per parameter = 3.35 bits seed 2 time: 20 seconds (0.33 minutes) MOTIF A 1-1 569 cctttcgctc TTTTGTAT gtaggcatca 576 1.000000 2-1 295 caaacggctc ATTTTGAG tacggattac 302 1.000000 3-1 711 catcacatcg ATTTTGGT ctacctataa 718 1.000000 4-1 572 ttatagcaag TTTTTGAG agtcccttca 579 1.000000 5-1 718 gttaaatgtt TTTTATCT caggTTCTTG 725 1.000000 6-1 181 ttgaccttgg TTTTTCCT tcttttcgcc 188 1.000000 7-1 173 gagtaaaaga ATTTTGAG ttccagggtg 180 1.000000 8-1 744 gagctattca CTATTTTA aTATTTGTTT 751 1.000000 9-1 530 tagtacgtct TATTTTTG attatatgct 537 1.000000 10-1 179 cagaatttcg TTTTGTAG tatagtttat 186 1.000000 11-1 532 ttgctccaaa TTTTGGAT tttgtgttcg 539 1.000000 12-1 500 catatctttt TTTTTCAG cgatgcaatt 507 1.000000 13-1 633 cgTTCGTGCc ATTCATAA aatAGGAAAA 640 1.000000 14-1 380 ttgtcattgt CATTGAAT ccccgattat 387 1.000000 15-1 575 aacgtgatca ATTCGTGT ttgcaagcta 582 1.000000 16-1 14 ttgaacgtga TTTTGGAA ctggaaattt 21 1.000000 17-1 223 CTTTtctttt CTTTTCCT ttttttacaa 230 1.000000 18-1 14 agcactaaga TTTTTGAT ataagatcca 21 1.000000 19-1 127 tcattctcag CTTTGGCT tccatggcaa 134 1.000000 20-1 453 tgctctgagt CTTTCTTT acgGTGTTTG 460 1.000000 21-1 274 tggacacact CTTTACCA cgctgtTGCA 281 1.000000 22-1 389 taatagttta ATTTTCCA aaaaggttcc 396 1.000000 23-1 780 AGACactcct TTTTTTCT tcatactata 787 1.000000 24-1 333 Tgaacaaatt ATTTTGCC ttgtccttct 340 1.000000 25-1 528 AACAGCCagg CTTTGTGT tagtattttg 535 1.000000 26-1 683 gcctccaacg GTTTTGAA aacaggcgat 690 1.000000 27-1 558 gtgaaatttg ATTTTCTT ggccaaacta 565 1.000000 28-1 775 ggatgattcc CTTTCGAA tttgtgaacg 782 1.000000 29-1 605 TTTATATACc CTTTTCGT ggtccttttt 612 1.000000 sites: ****** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 569 576 572 -w 1.000000 >2 295 302 298 -w 1.000000 >3 711 718 714 -w 1.000000 >4 572 579 575 -w 1.000000 >5 718 725 721 -w 1.000000 >6 181 188 184 -w 1.000000 >7 173 180 176 -w 1.000000 >8 744 751 747 -w 1.000000 >9 530 537 533 -w 1.000000 >10 179 186 182 -w 1.000000 >11 532 539 535 -w 1.000000 >12 500 507 503 -w 1.000000 >13 633 640 636 -w 1.000000 >14 380 387 383 -w 1.000000 >15 575 582 578 -w 1.000000 >16 14 21 17 -w 1.000000 >17 223 230 226 -w 1.000000 >18 14 21 17 -w 1.000000 >19 127 134 130 -w 1.000000 >20 453 460 456 -w 1.000000 >21 274 281 277 -w 1.000000 >22 389 396 392 -w 1.000000 >23 780 787 783 -w 1.000000 >24 333 340 336 -w 1.000000 >25 528 535 531 -w 1.000000 >26 683 690 686 -w 1.000000 >27 558 565 561 -w 1.000000 >28 775 782 778 -w 1.000000 >29 605 612 608 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 30 . 37 0.2 2 . . . 87 1.0 3 . . . 91 1.1 4 . . . 87 1.1 5 . . 27 53 0.3 6 . 24 36 . 0.3 8 . . . 50 0.2 non- site . . . 30 site . . . 66 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 2 . 1 2 2 . . . 13 10 3 . . . 14 11 4 . . . 13 11 5 . . 1 4 3 6 . 1 3 . 3 8 . . . 3 2 site . . . 7 4 Weighted motif model: POS A C G T Prob 1 0.279075 0.299718 0.048268 0.372939 0.152260 2 0.090987 0.017586 0.016920 0.874506 1.030802 3 0.059639 0.017586 0.016920 0.905854 1.143116 4 0.028292 0.080282 0.016920 0.874506 1.053330 5 0.122335 0.080282 0.267704 0.529679 0.285009 6 0.059639 0.237022 0.361748 0.341591 0.323194 8 0.247727 0.048934 0.205008 0.498331 0.193092 Conservedness in bits: 4.180804 Conservedness in prob: 7.605575 Concensus sequence: CTTTTGT Complete log-likelihood ratio = 156 bits Missing position information = 113 bits Log-likelihood ratio statistic = 43 bits Degrees of freedom = 21 Information per parameter = 2.07 bits MOTIF B 1-1 757 agaccttgta AACAGCA taggagtAAA 763 1.000000 2-1 158 agtgaagtca GGCAGCC gtcccctcag 164 1.000000 3-1 395 ttttctcgag AACAGCA atgcccacag 401 1.000000 4-1 669 aagcaacatc AGCTGCA ctagttgagc 675 1.000000 5-1 163 accaaatgtt GACAGCA atggctcaag 169 1.000000 6-1 399 cggtagtgct TGTAGTC cgcacaggcg 405 1.000000 7-1 580 acctctaaat AACAGCA tgatgcaaca 586 1.000000 8-1 264 tagtaagcca TGCAGCA atgtaaagag 270 1.000000 9-1 444 ccctgaacgg AACAGCG cctaaaaata 450 1.000000 10-1 777 atttcaatac GGCAGCA actttttact 783 1.000000 11-1 183 aatgctagga GACAGAC catctttgat 189 1.000000 12-1 525 attttcaaca TGCAGCC atttcaccga 531 1.000000 13-1 478 actaatacaa AACAGCC tAAAAAAGat 484 1.000000 14-1 584 tttcattcgg TGCAGCA ttttaattca 590 1.000000 15-1 228 acacgagaaa AGAAACA tgattgactg 234 1.000000 16-1 201 taagcgaaga AGCAGCC ttctcaatgc 207 1.000000 17-1 469 taaagatctc AGCAGCC acccaatcta 475 1.000000 18-1 579 TTAAAAAaaa GGCAGCA taagagcaac 585 1.000000 19-1 94 cagggtcagc AGCAGCA acaaggccac 100 1.000000 20-1 434 ccgccaattt ATCAGCA attgctctga 440 1.000000 21-1 288 ACCAcgctgt TGCAGCA gcgagtccag 294 1.000000 22-1 102 gtgctcgcgt TGCAGAA atacgaggta 108 1.000000 23-1 767 gtagattagc AGCAGAC actcctTTTT 773 1.000000 24-1 69 attacgatgc TGCAGAA gataacgaac 75 1.000000 25-1 518 gcacaatctc AACAGCC aggCTTTGTG 524 1.000000 26-1 1 AGCAACC agcTGTCAAA 7 1.000000 27-1 438 agtaaataca TGCAGGA aacatacatt 444 1.000000 28-1 213 agtgaaaaca GGCAGCC ctatgctgat 219 1.000000 29-1 520 ggttctttgc AACAGCA ctgaaaatag 526 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 757 763 760 -w 1.000000 >2 158 164 161 -w 1.000000 >3 395 401 398 -w 1.000000 >4 669 675 672 -w 1.000000 >5 163 169 166 -w 1.000000 >6 399 405 402 -w 1.000000 >7 580 586 583 -w 1.000000 >8 264 270 267 -w 1.000000 >9 444 450 447 -w 1.000000 >10 777 783 780 -w 1.000000 >11 183 189 186 -w 1.000000 >12 525 531 528 -w 1.000000 >13 478 484 481 -w 1.000000 >14 584 590 587 -w 1.000000 >15 228 234 231 -w 1.000000 >16 201 207 204 -w 1.000000 >17 469 475 472 -w 1.000000 >18 579 585 582 -w 1.000000 >19 94 100 97 -w 1.000000 >20 434 440 437 -w 1.000000 >21 288 294 291 -w 1.000000 >22 102 108 105 -w 1.000000 >23 767 773 770 -w 1.000000 >24 69 75 72 -w 1.000000 >25 518 524 521 -w 1.000000 >26 1 7 4 -w 1.000000 >27 438 444 441 -w 1.000000 >28 213 219 216 -w 1.000000 >29 520 526 523 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 50 . . . 0.3 2 . . 61 . 0.8 3 . 86 . . 1.5 4 91 . . . 1.1 5 . . 86 . 1.6 6 . 74 . . 1.0 7 56 36 . . 0.6 non- site 31 19 18 . site 37 30 26 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 3 . . . 3 2 . . 11 . 8 3 . 19 . . 15 4 14 . . . 11 5 . . 19 . 16 6 . 14 . . 10 7 5 3 . . 6 site 1 2 1 . 3 Weighted motif model: POS A C G T Prob 1 0.498511 0.017586 0.205008 0.278895 0.265075 2 0.310423 0.017586 0.612531 0.059459 0.849261 3 0.059639 0.863981 0.016920 0.059459 1.523259 4 0.906034 0.017586 0.016920 0.059459 1.136019 5 0.090987 0.017586 0.863315 0.028111 1.591565 6 0.153683 0.738589 0.048268 0.059459 1.035710 7 0.561207 0.362414 0.048268 0.028111 0.614398 Conservedness in bits: 7.015289 Conservedness in prob: 11.151204 Concensus sequence: AGCAGCC Complete log-likelihood ratio = 258 bits Missing position information = 190 bits Log-likelihood ratio statistic = 68 bits Degrees of freedom = 21 Information per parameter = 3.25 bits MOTIF C 1-1 402 tacctcttgc CAGCAACAG gccagttata 410 1.000000 2-1 648 ccacaaataa CTGCAACAG cgcctACAAT 656 1.000000 3-1 76 cgcggaatct CGGATCTAA actaattgtt 84 1.000000 4-1 146 gaattgcatt TTGTAATAA caactgcatg 154 1.000000 5-1 518 attataacat TTTTAAAAC TTTTTTTTTt 526 1.000000 6-1 504 tgtgatgtac CTACAAGCA atgcataagc 512 1.000000 7-1 98 Caatgccctg TAAAAAACC gcatcatcta 106 1.000000 8-1 765 TTTGTTTtgg CATTTGAAA ctcgttgaca 773 1.000000 9-1 56 ATAAAAacaa CGGCACCAG aaccaaaaat 64 1.000000 10-1 462 tggatttttt TGGCAGATA ctacggtcaa 470 1.000000 11-1 163 tgataattac CAGCAATAC taatgctagg 171 1.000000 12-1 342 acttgcatca CTGTAGGAG cgactataaa 350 1.000000 13-1 586 gttcctttta CAATTAGAT tacttctttt 594 1.000000 14-1 669 tgtttcagcc CAGTAATAA aacatttaca 677 1.000000 15-1 653 acgagacctg TTGATGGAT tgtttcgtgt 661 1.000000 16-1 771 cattaaataa CTAATAAAT atataaatac 779 1.000000 17-1 583 caaaacgcgg CTGTAACAT aattttctga 591 1.000000 18-1 567 aaatcgtcta TATTAAAAA aaaGGCAGCA 575 1.000000 19-1 718 gtatgtgttg CTCTTAAAA tatttggata 726 1.000000 20-1 535 ttactattat CGGACATAA ttgcgttggt 543 1.000000 21-1 191 gtacacgaag CTGCAACAG ccgttcgtac 199 1.000000 22-1 648 ccgctcacac TTGCAAAAA gcatataaaa 656 1.000000 23-1 72 aatctcggat CTAAACTAA ttgttcaggc 80 1.000000 24-1 315 ccttcccttt CAGTAAAAT gaacaaattA 323 1.000000 25-1 375 ctttttaggg CAGTACCAG caaacgctgc 383 1.000000 26-1 11 AGCAACCagc TGTCAAAAC ggattaccag 19 1.000000 27-1 341 ccactatcgg TAGTGAAAT tacgtacata 349 1.000000 28-1 149 tatcgaaatt CTGGAAAAA tcccttaatA 157 1.000000 29-1 595 tctcttctac TTTATATAC cCTTTTCGTg 603 1.000000 sites: *** ** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 402 410 406 -w 1.000000 >2 648 656 652 -w 1.000000 >3 76 84 80 -w 1.000000 >4 146 154 150 -w 1.000000 >5 518 526 522 -w 1.000000 >6 504 512 508 -w 1.000000 >7 98 106 102 -w 1.000000 >8 765 773 769 -w 1.000000 >9 56 64 60 -w 1.000000 >10 462 470 466 -w 1.000000 >11 163 171 167 -w 1.000000 >12 342 350 346 -w 1.000000 >13 586 594 590 -w 1.000000 >14 669 677 673 -w 1.000000 >15 653 661 657 -w 1.000000 >16 771 779 775 -w 1.000000 >17 583 591 587 -w 1.000000 >18 567 575 571 -w 1.000000 >19 718 726 722 -w 1.000000 >20 535 543 539 -w 1.000000 >21 191 199 195 -w 1.000000 >22 648 656 652 -w 1.000000 >23 72 80 76 -w 1.000000 >24 315 323 319 -w 1.000000 >25 375 383 379 -w 1.000000 >26 11 19 15 -w 1.000000 >27 341 349 345 -w 1.000000 >28 149 157 153 -w 1.000000 >29 595 603 599 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 61 . . 0.9 2 . . . 47 0.2 3 . . 58 . 0.6 5 66 . . . 0.4 6 69 . . . 0.6 8 84 . . . 0.9 9 40 . . . 0.0 non- site 31 . . . site 46 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 10 . . 9 2 . . . 3 2 3 . . 10 . 6 5 7 . . . 4 6 8 . . . 6 8 12 . . . 9 9 2 . . . 0 site 3 . . . 1 Weighted motif model: POS A C G T Prob 1 0.028292 0.613197 0.016920 0.341591 0.913260 2 0.341771 0.017586 0.173660 0.466983 0.245715 3 0.185031 0.048934 0.581183 0.184851 0.581698 5 0.655251 0.048934 0.048268 0.247547 0.433382 6 0.686599 0.142978 0.142312 0.028111 0.569106 8 0.843339 0.080282 0.016920 0.059459 0.911091 9 0.404467 0.174326 0.205008 0.216199 0.043736 Conservedness in bits: 3.697989 Conservedness in prob: 7.934028 Concensus sequence: CTGAAAA Complete log-likelihood ratio = 137 bits Missing position information = 134 bits Log-likelihood ratio statistic = 3 bits Degrees of freedom = 21 Information per parameter = 0.169 bits MOTIF D 1-1 131 caatactgta ACAATTGGACA aaatatacgt 141 1.000000 2-1 662 AACAGcgcct ACAATGATATA aaaggctttg 672 1.000000 3-1 420 agttttattt ACAATTTTACA ctattgacgt 430 1.000000 4-1 168 ctgcatggga AAAATTATATA gattttctac 178 1.000000 5-1 785 aaacaaacaa AAAAAAAAAAA aaaaa 795 1.000000 6-1 780 aataaggcag AGAAAAAGAAA ggaaaataat 790 1.000000 7-1 147 acaAAAAAAA AAAAAGTAAAA atttcgagta 157 1.000000 8-1 383 actttcattg AAAATTAGACA gtcatgtgat 393 1.000000 9-1 21 cgttattgtt TAAAAGAGATA aaagacgaga 31 1.000000 10-1 723 ttctccttta TAAAAGTAAGA cccggtgcta 733 1.000000 11-1 695 tcttgtttta ACAATACGATT taatctcgga 705 1.000000 12-1 549 cgaaaatacc TAAAAAGGAAA taggcaataa 559 1.000000 13-1 644 TTCATAAaat AGGAAAAGATA acaggtaagc 654 1.000000 14-1 723 catgtaaagc AAAAAACTAGA acactaacat 733 1.000000 15-1 171 ctcaaaatag CAAAAAACGCA aaaagcatac 181 1.000000 16-1 229 aaagcttctg AAAAAGAGAAA agtgagtgcg 239 1.000000 17-1 631 aatgacttaa AACAAGCGACT atcgcaaata 641 1.000000 18-1 68 cccataatag AAAATTATGGA acaatagacc 78 1.000000 19-1 55 caataccagc AACAAGGCCAA aactatcagc 65 1.000000 20-1 260 cagaatggaa CAAACGCTGAT acggatactt 270 1.000000 21-1 344 gccgtctaga TAACTCAGATT cacgctcgtg 354 1.000000 22-1 135 cgccttagga ACATAAAAATA aaTATCTCGC 145 1.000000 23-1 422 aatttatgat AAAAAAATCAA gaaaaaaacc 432 1.000000 24-1 768 gcacactaca AAAATACGCTA tcatctaccg 778 1.000000 25-1 735 gctctataaa ATCAAGATCAA gcatagtacc 745 1.000000 26-1 560 aAAAAAAAcc AAGAACGTATA aaaatgtgca 570 1.000000 27-1 248 gaggctggaa CAGAAGTCAAA tgaggatgac 258 1.000000 28-1 38 aaatgacgtc CAAAACTGCCA gtattccata 48 1.000000 29-1 771 atactcgtat AAGCAAGAAAT aaagatacga 781 1.000000 sites: ***** * * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 131 141 136 -w 1.000000 >2 662 672 667 -w 1.000000 >3 420 430 425 -w 1.000000 >4 168 178 173 -w 1.000000 >5 785 795 790 -w 1.000000 >6 780 790 785 -w 1.000000 >7 147 157 152 -w 1.000000 >8 383 393 388 -w 1.000000 >9 21 31 26 -w 1.000000 >10 723 733 728 -w 1.000000 >11 695 705 700 -w 1.000000 >12 549 559 554 -w 1.000000 >13 644 654 649 -w 1.000000 >14 723 733 728 -w 1.000000 >15 171 181 176 -w 1.000000 >16 229 239 234 -w 1.000000 >17 631 641 636 -w 1.000000 >18 68 78 73 -w 1.000000 >19 55 65 60 -w 1.000000 >20 260 270 265 -w 1.000000 >21 344 354 349 -w 1.000000 >22 135 145 140 -w 1.000000 >23 422 432 427 -w 1.000000 >24 768 778 773 -w 1.000000 >25 735 745 740 -w 1.000000 >26 560 570 565 -w 1.000000 >27 248 258 253 -w 1.000000 >28 38 48 43 -w 1.000000 >29 771 781 776 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 69 . . . 0.5 2 69 . . . 0.5 3 72 . . . 0.6 4 84 . . . 0.9 5 62 . . . 0.5 9 69 . . . 0.6 11 78 . . . 0.8 non- site 31 . . . site 75 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 8 . . . 5 2 8 . . . 5 3 9 . . . 6 4 12 . . . 9 5 6 . . . 5 9 8 . . . 6 11 10 . . . 8 site 10 . . . 6 Weighted motif model: POS A C G T Prob 1 0.686599 0.142978 0.016920 0.153503 0.507825 2 0.686599 0.174326 0.079616 0.059459 0.518667 3 0.717947 0.111630 0.142312 0.028111 0.624949 4 0.843339 0.080282 0.016920 0.059459 0.911091 5 0.623903 0.048934 0.016920 0.310243 0.471954 9 0.686599 0.174326 0.110964 0.028111 0.577595 11 0.780643 0.017586 0.016920 0.184851 0.779162 Conservedness in bits: 4.391243 Conservedness in prob: 8.399256 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 166 bits Missing position information = 143 bits Log-likelihood ratio statistic = 22 bits Degrees of freedom = 21 Information per parameter = 1.07 bits MOTIF E 1-1 187 atggatttgg AGAAAAA cagaagcttc 193 1.000000 2-1 356 cgtaagtctc AAAAAAA aattgggtta 362 1.000000 3-1 595 tacttgtaaa TAGAAAA atgatgttct 601 1.000000 4-1 757 tgagcttttt GAGAGAA taaccctttg 763 1.000000 5-1 450 ataccttaaa TAGAAAA ggaaagataa 456 1.000000 6-1 212 ctcagcccga GAAAAAA gcagcgactg 218 1.000000 7-1 140 tgcagaaaca AAAAAAA AAAAAGTAAA 146 1.000000 8-1 511 gctcgtatca AAATAAA actagtcagt 517 1.000000 9-1 716 taggaacaaa AGAAAAA gaaaactgga 722 1.000000 10-1 200 agtttattag AAACAAA tgtgaataga 206 1.000000 11-1 726 gtagttaagc CAAAGAA tacgtgttat 732 1.000000 12-1 314 ttacaggatg AAAAAAA aaagacattg 320 1.000000 13-1 486 aaAACAGCCt AAAAAAG attgaacaac 492 1.000000 14-1 781 cttttcgata AAACTAA gagtacggca 787 1.000000 15-1 789 atacgctatc AAAAGAA cgaat 795 1.000000 16-1 620 aaacagaact GAAACAA gtatattggc 626 1.000000 17-1 780 aataaaagct AAAAAAA ccaaaaaatt 786 1.000000 18-1 208 tatttttatc AAAAAAG tattaacatt 214 1.000000 19-1 643 ctgtaatttg AAACAAA taacgtaatt 649 1.000000 20-1 714 aaccaaacca AAACAAA acaaaaacaA 720 1.000000 21-1 789 aaaagggaaa AAAAGCA gatat 795 1.000000 22-1 84 actcctcaac AGAAAAC cgtgctcgcg 90 1.000000 23-1 248 tccatgatat GGAAAAA cgtataccag 254 1.000000 24-1 158 ggggaactag AGAAAGA cggctcaaaa 164 1.000000 25-1 680 gaatgtaaac AAAAAAA actgtctagg 686 1.000000 26-1 551 cacaccttta AAAAAAA ccAAGAACGT 557 1.000000 27-1 786 gaagccaaac CAAAAAA actataca 792 1.000000 28-1 167 Atcccttaat AAAATAA tcgggcctta 173 1.000000 29-1 258 AAAAAaaaaa AAAAAAA atgttctcaa 264 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 187 193 190 -w 1.000000 >2 356 362 359 -w 1.000000 >3 595 601 598 -w 1.000000 >4 757 763 760 -w 1.000000 >5 450 456 453 -w 1.000000 >6 212 218 215 -w 1.000000 >7 140 146 143 -w 1.000000 >8 511 517 514 -w 1.000000 >9 716 722 719 -w 1.000000 >10 200 206 203 -w 1.000000 >11 726 732 729 -w 1.000000 >12 314 320 317 -w 1.000000 >13 486 492 489 -w 1.000000 >14 781 787 784 -w 1.000000 >15 789 795 792 -w 1.000000 >16 620 626 623 -w 1.000000 >17 780 786 783 -w 1.000000 >18 208 214 211 -w 1.000000 >19 643 649 646 -w 1.000000 >20 714 720 717 -w 1.000000 >21 789 795 792 -w 1.000000 >22 84 90 87 -w 1.000000 >23 248 254 251 -w 1.000000 >24 158 164 161 -w 1.000000 >25 680 686 683 -w 1.000000 >26 551 557 554 -w 1.000000 >27 786 792 789 -w 1.000000 >28 167 173 170 -w 1.000000 >29 258 264 261 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 69 . . . 0.5 2 78 . . . 0.9 3 84 . . . 1.0 4 78 . . . 0.8 5 72 . . . 0.6 6 87 . . . 1.0 7 84 . . . 0.9 non- site 31 . . . site 83 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 8 . . . 5 2 10 . . . 9 3 12 . . . 10 4 10 . . . 8 5 9 . . . 6 6 13 . . . 10 7 12 . . . 9 site 12 . . . 9 Weighted motif model: POS A C G T Prob 1 0.686599 0.080282 0.142312 0.090807 0.466327 2 0.780643 0.017586 0.173660 0.028111 0.860299 3 0.843339 0.017586 0.110964 0.028111 0.972039 4 0.780643 0.142978 0.016920 0.059459 0.773419 5 0.717947 0.048934 0.142312 0.090807 0.553180 6 0.874687 0.048934 0.048268 0.028111 1.015793 7 0.843339 0.048934 0.079616 0.028111 0.921096 Conservedness in bits: 5.562153 Conservedness in prob: 9.368540 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 209 bits Missing position information = 164 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.15 bits MOTIF F 1-1 161 tttccgagac TTCTATC gcatgttgta 167 1.000000 2-1 1 TTTTTGC caagggacga 7 1.000000 3-1 137 gaaggtcggg TTTTGTC tcatgttgtt 143 1.000000 4-1 284 agtatatacg TCTTTGG cacgcgattg 290 1.000000 5-1 730 TTATCTcagg TTCTTGC ttgtctttgg 736 1.000000 6-1 685 tatatcataa CTTTTTA ctcttgcctc 691 1.000000 7-1 82 ttttctgcaa TTGTTTC aatgccctgT 88 1.000000 8-1 120 acaactcatc TTGTTGC tgttctacgt 126 1.000000 9-1 512 Atgcatttcc TTTTTGA gtagtacgtc 518 1.000000 10-1 237 cgaagcccta TTTTAGC ggattttagc 243 1.000000 11-1 409 TTTTtaattt ATTTTTG tgttgcaagc 415 1.000000 12-1 142 ggtttggggc TTGTTGG tatgttgcat 148 1.000000 13-1 625 ttttgagacg TTCGTGC cATTCATAAa 631 1.000000 14-1 541 cttatcttaa TTTTCGC caataggttt 547 1.000000 15-1 81 ttgtaactat TTCTTAC tcttgcgctg 87 1.000000 16-1 541 aatacataat TCTTGTC acaatggatt 547 1.000000 17-1 548 gtaaagtctc TTTTTGG atattgcacg 554 1.000000 18-1 313 gcccagcgaa TTCGTGG agaaatttat 319 1.000000 19-1 602 ctgtctcatt TTGGTGC gatgatgaaa 608 1.000000 20-1 464 TTTCTTTacg GTGTTTG gagacgtatt 470 1.000000 21-1 419 ccgcatgtat TTGTTGC tgcagagcgg 425 1.000000 22-1 345 gtgaaaatgc TTGGTGC taggccctgt 351 1.000000 23-1 301 ttcttattac TTCTTGC acaaagatgc 307 1.000000 24-1 139 cgacgatgac TGGTGGC taggggaact 145 1.000000 25-1 53 attggcagga TTGTGGC aagggcaatc 59 1.000000 26-1 403 gcaattaagt TTGTTGC ggaataaatg 409 1.000000 27-1 379 agaagataat TCGTTGC gcatatgcta 385 1.000000 28-1 619 ggtaatacat ATGTTTC aatactgttt 625 1.000000 29-1 331 tcggtttcgt TTGTTGC ttaaagggtg 337 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 161 167 164 -w 1.000000 >2 1 7 4 -w 1.000000 >3 137 143 140 -w 1.000000 >4 284 290 287 -w 1.000000 >5 730 736 733 -w 1.000000 >6 685 691 688 -w 1.000000 >7 82 88 85 -w 1.000000 >8 120 126 123 -w 1.000000 >9 512 518 515 -w 1.000000 >10 237 243 240 -w 1.000000 >11 409 415 412 -w 1.000000 >12 142 148 145 -w 1.000000 >13 625 631 628 -w 1.000000 >14 541 547 544 -w 1.000000 >15 81 87 84 -w 1.000000 >16 541 547 544 -w 1.000000 >17 548 554 551 -w 1.000000 >18 313 319 316 -w 1.000000 >19 602 608 605 -w 1.000000 >20 464 470 467 -w 1.000000 >21 419 425 422 -w 1.000000 >22 345 351 348 -w 1.000000 >23 301 307 304 -w 1.000000 >24 139 145 142 -w 1.000000 >25 53 59 56 -w 1.000000 >26 403 409 406 -w 1.000000 >27 379 385 382 -w 1.000000 >28 619 625 622 -w 1.000000 >29 331 337 334 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.8 2 . . . 81 0.9 3 . . 42 . 0.5 4 . . . 81 0.9 5 . . . 72 0.6 6 . . 64 . 0.9 7 . 68 . . 1.0 non- site . . 18 30 site . . 24 56 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 8 2 . . . 11 9 3 . . 5 . 5 4 . . . 11 9 5 . . . 9 6 6 . . 12 . 9 7 . 12 . . 10 site . . 1 5 4 Weighted motif model: POS A C G T Prob 1 0.090987 0.048934 0.048268 0.811810 0.777993 2 0.028292 0.111630 0.048268 0.811810 0.850035 3 0.028292 0.205674 0.424444 0.341591 0.474175 4 0.028292 0.017586 0.142312 0.811810 0.916626 5 0.090987 0.048934 0.142312 0.717766 0.558424 6 0.059639 0.017586 0.643879 0.278895 0.908372 7 0.090987 0.675893 0.205008 0.028111 0.989798 Conservedness in bits: 5.475423 Conservedness in prob: 10.177065 Concensus sequence: TTGTTGC Complete log-likelihood ratio = 203 bits Missing position information = 132 bits Log-likelihood ratio statistic = 71 bits Degrees of freedom = 21 Information per parameter = 3.41 bits MOTIF G 1-1 771 GCAtaggagt AAAGACAAA ttcggtgtag 779 1.000000 2-1 741 tttcgagtaa ATTTAGAAA cagcaagcct 749 1.000000 3-1 497 tcccctgata AATGTCAAA tgtatgacgt 505 1.000000 4-1 623 tgcaacgtac AAGAGCAAA gtagaaaaat 631 1.000000 5-1 499 attcaggtaa AATACAAAA attataacat 507 1.000000 6-1 5 gggc AAAATAAAA aaggaaaaag 13 1.000000 7-1 357 cccttgaatg AACACCAAA agatgtgtgt 365 1.000000 8-1 241 gtatgatatt AATAGGGAA ctcatagtaa 249 1.000000 9-1 43 aagacgagaa AAAATAAAA acaaCGGCAC 51 1.000000 10-1 429 gacttcgcgt AACACGAAA aatgctggtg 437 1.000000 11-1 550 tttgtgttcg AAAAAGGGA agattgctcc 558 1.000000 12-1 643 ttattaaaag AAAATAAAA ctatcctttt 651 1.000000 13-1 404 ctcaatagaa AAAGTGAAA cagataaaaa 412 1.000000 14-1 441 tgttccgtgt AAGGTGATA ttactcaaaT 449 1.000000 15-1 328 aatattccag AAAAAGAAA tTCCTTCTTT 336 1.000000 16-1 125 aatttgaagc AAAAAGGAA aatccattct 133 1.000000 17-1 275 tattggtcgg AACGACCAA gcttcaattt 283 1.000000 18-1 724 aaattttcta TATATAAAC actggttcgg 732 1.000000 19-1 792 caagtttctg AAAATCAAA 800 1.000000 20-1 730 Aacaaaaaca AAAACAAAA acaggctaag 738 1.000000 21-1 141 atcatcgccg AATACGAAA cgtacgtcat 149 1.000000 22-1 747 tcaagtcagt AACAACAAA tacccatcgt 755 1.000000 23-1 590 ctttattggc AAGGGAAGA attcgatgac 598 1.000000 24-1 21 ctccagagaa AAAGCCAAA ggaaaatcct 29 1.000000 25-1 169 ttgatgaccc AAAAAGAGA tgaaagtaag 177 1.000000 26-1 486 aagcgtttaa AATAGAGAA tcaggaTGAA 494 1.000000 27-1 188 tgataaactg AAGAGGAAC tatatccata 196 1.000000 28-1 399 actgattatt AAAAACAAA cgtaaactca 407 1.000000 29-1 244 cggccaaaaa AAAAAAAAA aaaaaAAAAA 252 1.000000 sites: ** * **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 771 779 775 -w 1.000000 >2 741 749 745 -w 1.000000 >3 497 505 501 -w 1.000000 >4 623 631 627 -w 1.000000 >5 499 507 503 -w 1.000000 >6 5 13 9 -w 1.000000 >7 357 365 361 -w 1.000000 >8 241 249 245 -w 1.000000 >9 43 51 47 -w 1.000000 >10 429 437 433 -w 1.000000 >11 550 558 554 -w 1.000000 >12 643 651 647 -w 1.000000 >13 404 412 408 -w 1.000000 >14 441 449 445 -w 1.000000 >15 328 336 332 -w 1.000000 >16 125 133 129 -w 1.000000 >17 275 283 279 -w 1.000000 >18 724 732 728 -w 1.000000 >19 792 800 796 -w 1.000000 >20 730 738 734 -w 1.000000 >21 141 149 145 -w 1.000000 >22 747 755 751 -w 1.000000 >23 590 598 594 -w 1.000000 >24 21 29 25 -w 1.000000 >25 169 177 173 -w 1.000000 >26 486 494 490 -w 1.000000 >27 188 196 192 -w 1.000000 >28 399 407 403 -w 1.000000 >29 244 252 248 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 2 91 . . . 1.1 4 69 . 24 . 0.7 6 . 30 36 . 0.4 7 78 . . . 0.8 8 81 . . . 0.8 9 87 . . . 1.0 non- site 31 . . . site 79 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 2 14 . . . 11 4 8 . 1 . 7 6 . 2 3 . 4 7 10 . . . 8 8 11 . . . 8 9 13 . . . 10 site 11 . . . 8 Weighted motif model: POS A C G T Prob 1 0.906034 0.017586 0.016920 0.059459 1.136019 2 0.906034 0.017586 0.016920 0.059459 1.136019 4 0.686599 0.017586 0.236356 0.059459 0.663021 6 0.310423 0.299718 0.361748 0.028111 0.437764 7 0.780643 0.048934 0.142312 0.028111 0.786360 8 0.811991 0.017586 0.110964 0.059459 0.838393 9 0.874687 0.080282 0.016920 0.028111 1.046419 Conservedness in bits: 6.043995 Conservedness in prob: 9.384991 Concensus sequence: AAAGAAA Complete log-likelihood ratio = 229 bits Missing position information = 169 bits Log-likelihood ratio statistic = 60 bits Degrees of freedom = 21 Information per parameter = 2.87 bits MOTIF H 1-1 734 TCTTGCGCAa TTGCTTATC agatagacct 742 1.000000 2-1 215 gcaaccacca TTTTTTTTT gctccaaagg 223 1.000000 3-1 15 tcacggaatg TTACTTATC ttatatatta 23 1.000000 4-1 123 tattcttgct TGTGCTATC tcaagaattg 131 1.000000 5-1 19 acccagtgtc TTCCCTATC ttttgaacca 27 1.000000 6-1 586 TTTTTACTTt TTTTTTTTT tgtttctgca 594 1.000000 7-1 500 ttcctctagt TTAGTGCAG tcgctgctTT 508 1.000000 8-1 572 ctttactgta TTATTTTTT gatatccaca 580 1.000000 9-1 244 attaaacatg TTTTCTATT tgccgaataa 252 1.000000 10-1 17 tgataaaagg TTTAATATT tcgaagcttc 25 1.000000 11-1 230 actgtgatat TGGTTTATT ggataagttc 238 1.000000 12-1 457 aagagagacc CGGTCGTTT cagaatgcaa 465 1.000000 13-1 339 aaacacagca TTTCTTTTC ggagagctcg 347 1.000000 14-1 84 tgttgtcttt TTGCTTGTT ggaattagag 92 1.000000 15-1 195 agcataccgc TGGGCGCTT atctatatta 203 1.000000 16-1 394 acaggcgtga TTTTCTGTC taaacattgc 402 1.000000 17-1 697 cgcagaataa TGATCTATC atcaataatt 705 1.000000 18-1 679 actagcgggt TGTTTTATC aTAATTGTTT 687 1.000000 19-1 423 atatataact TTATTTTTT tttattaatt 431 1.000000 20-1 610 tgaacatctc TGTCTTTTC tgttgtacat 618 1.000000 21-1 726 tggtttggtt TGATTTATT ttggtttggc 734 1.000000 22-1 727 gtttatgcct TTTCTGGTT ctcaagtcag 735 1.000000 23-1 482 tgaccaccta TGGCCTAAC ctaactatga 490 1.000000 24-1 86 gataacgaac TGACCTTTG tggaaaatga 94 1.000000 25-1 490 gtaataccat TTACTGATC aagaatgtcg 498 1.000000 26-1 501 AGAAtcagga TGAATTATC caagaaacgt 509 1.000000 27-1 224 caaggaaaga CTACTTTTC ttacagaggc 232 1.000000 28-1 426 caagcctcac TTGATGCTC agacggagta 434 1.000000 29-1 495 tgttttattc TTTTCTTTC cttcaaggtt 503 1.000000 sites: ** *** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 734 742 738 -w 1.000000 >2 215 223 219 -w 1.000000 >3 15 23 19 -w 1.000000 >4 123 131 127 -w 1.000000 >5 19 27 23 -w 1.000000 >6 586 594 590 -w 1.000000 >7 500 508 504 -w 1.000000 >8 572 580 576 -w 1.000000 >9 244 252 248 -w 1.000000 >10 17 25 21 -w 1.000000 >11 230 238 234 -w 1.000000 >12 457 465 461 -w 1.000000 >13 339 347 343 -w 1.000000 >14 84 92 88 -w 1.000000 >15 195 203 199 -w 1.000000 >16 394 402 398 -w 1.000000 >17 697 705 701 -w 1.000000 >18 679 687 683 -w 1.000000 >19 423 431 427 -w 1.000000 >20 610 618 614 -w 1.000000 >21 726 734 730 -w 1.000000 >22 727 735 731 -w 1.000000 >23 482 490 486 -w 1.000000 >24 86 94 90 -w 1.000000 >25 490 498 494 -w 1.000000 >26 501 509 505 -w 1.000000 >27 224 232 228 -w 1.000000 >28 426 434 430 -w 1.000000 >29 495 503 499 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.1 2 . . 36 59 0.7 4 . 36 . 40 0.2 5 . 33 . 59 0.6 6 . . . 75 0.8 8 . . . 87 1.0 9 . 49 . 40 0.6 non- site . . . 30 site . . . 67 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 11 2 . . 3 6 7 4 . 3 . 2 2 5 . 3 . 6 6 6 . . . 10 8 8 . . . 13 10 9 . 7 . 2 6 site . . . 8 6 Weighted motif model: POS A C G T Prob 1 0.028292 0.080282 0.016920 0.874506 1.053330 2 0.028292 0.017586 0.361748 0.592375 0.743675 4 0.122335 0.362414 0.110964 0.404287 0.236998 5 0.059639 0.331066 0.016920 0.592375 0.611508 6 0.028292 0.017586 0.205008 0.749114 0.826145 8 0.090987 0.017586 0.016920 0.874506 1.030802 9 0.028292 0.487806 0.079616 0.404287 0.611845 Conservedness in bits: 5.114304 Conservedness in prob: 8.412815 Concensus sequence: TGCTTTC Complete log-likelihood ratio = 196 bits Missing position information = 154 bits Log-likelihood ratio statistic = 41 bits Degrees of freedom = 21 Information per parameter = 1.98 bits MOTIF I 1-1 231 aaccaaagta TACTTATTT agccatattt 239 1.000000 2-1 247 gagatgccta TTTCTATCT tttaatcgta 255 1.000000 3-1 643 tgagattttg TCTTTTTTT acctggTATT 651 1.000000 4-1 646 aaaaatttgg TTTTTATTT ttttaagcaa 654 1.000000 5-1 527 tTTTTAAAAC TTTTTTTTT ttgaaagTCC 535 1.000000 6-1 576 TTACTCGaaa TTTTTACTT tTTTTTTTTT 584 1.000000 7-1 687 attcctttcc GGTTTTTTT ctcaactacc 695 1.000000 8-1 753 aCTATTTTAa TATTTGTTT tggCATTTGA 761 1.000000 9-1 87 aaattaagta GTATTCTTT atgtgcattt 95 1.000000 10-1 673 aagtgttttt TTCTTTAGT cttataagtt 681 1.000000 11-1 394 cttcagtaat TTTTTTTTT taatttATTT 402 1.000000 12-1 377 cttcattgtt GCTTTATTT ttccaagtaa 385 1.000000 13-1 770 cggaaccgct TTCTTTATT tgaattgtct 778 1.000000 14-1 165 ggcttatact TTTTTCTTT actactttag 173 1.000000 15-1 338 AAAAAGAAAt TCCTTCTTT gggtgttgtg 346 1.000000 16-1 454 atttgattta TACTTGTTT cagatccttt 462 1.000000 17-1 208 atatgtaaca TTTTTCTTT tcttttCTTT 216 1.000000 18-1 689 TGTTTTATCa TAATTGTTT gggattaatc 697 1.000000 19-1 389 tcgccttcta TCCTTTGTT tacgtatttg 397 1.000000 20-1 634 tacatatatc TGCTTTTTT tcccttttta 642 1.000000 21-1 707 ttttgttttt GTTTTGTTT tggtttggtt 715 1.000000 22-1 239 ccaagtcgta TATTTTTCT ttatactgct 247 1.000000 23-1 662 taacgttttt TTTTTTTTT ttaaaggcat 670 1.000000 24-1 722 aGTTTCCACG TCTTTCTGT attttcatac 730 1.000000 25-1 546 tagtattttg TGTTTTTTA caacaacctc 554 1.000000 26-1 716 gattcaagaa TATTTCGTT tatcatatcc 724 1.000000 27-1 693 cttgcagtac TGCTTGTTT aaatacgcag 701 1.000000 28-1 561 TTTCACGgga TTTTCGTTT aggtgaaaat 569 1.000000 29-1 297 atcaaaagct TATTTGTTT gttatcTGTT 305 1.000000 sites: * *** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 231 239 235 -w 1.000000 >2 247 255 251 -w 1.000000 >3 643 651 647 -w 1.000000 >4 646 654 650 -w 1.000000 >5 527 535 531 -w 1.000000 >6 576 584 580 -w 1.000000 >7 687 695 691 -w 1.000000 >8 753 761 757 -w 1.000000 >9 87 95 91 -w 1.000000 >10 673 681 677 -w 1.000000 >11 394 402 398 -w 1.000000 >12 377 385 381 -w 1.000000 >13 770 778 774 -w 1.000000 >14 165 173 169 -w 1.000000 >15 338 346 342 -w 1.000000 >16 454 462 458 -w 1.000000 >17 208 216 212 -w 1.000000 >18 689 697 693 -w 1.000000 >19 389 397 393 -w 1.000000 >20 634 642 638 -w 1.000000 >21 707 715 711 -w 1.000000 >22 239 247 243 -w 1.000000 >23 662 670 666 -w 1.000000 >24 722 730 726 -w 1.000000 >25 546 554 550 -w 1.000000 >26 716 724 720 -w 1.000000 >27 693 701 697 -w 1.000000 >28 561 569 565 -w 1.000000 >29 297 305 301 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.9 3 . 27 . 62 0.5 4 . . . 91 1.2 5 . . . 91 1.2 7 . . . 78 0.7 8 . . . 81 0.8 9 . . . 91 1.1 non- site . . . 30 site . . . 87 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 9 3 . 1 . 6 5 4 . . . 14 12 5 . . . 14 12 7 . . . 10 7 8 . . . 11 8 9 . . . 14 11 site . . . 13 10 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.142312 0.811810 0.916626 3 0.090987 0.268370 0.016920 0.623723 0.538151 4 0.028292 0.048934 0.016920 0.905854 1.151197 5 0.028292 0.048934 0.016920 0.905854 1.151197 7 0.090987 0.048934 0.079616 0.780462 0.686445 8 0.028292 0.080282 0.079616 0.811810 0.833165 9 0.059639 0.017586 0.016920 0.905854 1.143116 Conservedness in bits: 6.419896 Conservedness in prob: 9.784785 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 242 bits Missing position information = 174 bits Log-likelihood ratio statistic = 68 bits Degrees of freedom = 21 Information per parameter = 3.27 bits MOTIF J 1-1 724 tctactattt TCTTGCGCA aTTGCTTATC 732 1.000000 2-1 438 gtttgtgccg TTCTGCACG ttttcgtata 446 1.000000 3-1 658 TTTTacctgg TATTTCGCG tttatattac 666 1.000000 4-1 452 gtacaggtgt TATGGCACG tgcgaataag 460 1.000000 5-1 543 TTTttgaaag TCCTTCTCG ctttaggatt 551 1.000000 6-1 564 ctcaaaattc TTTTACTCG aaaTTTTTAC 572 1.000000 7-1 517 AGtcgctgct TTTTTCTCG ggctgagtac 525 1.000000 8-1 535 agtcgttgac CATTGAGCA tatcgtccga 543 1.000000 9-1 494 tcgctgcctc TTTTTCCCA tgcatttccT 502 1.000000 10-1 301 tcttgttaca TCTGTCACG gcattccagc 309 1.000000 11-1 346 acttaagatc TGTTGGACG gttgtccgcg 354 1.000000 12-1 106 ggcgcatgga TCTTGACCA agttagaaga 114 1.000000 13-1 551 tcgtacgcta GTTTTCTCG cacatagtac 559 1.000000 14-1 459 Attactcaaa TGTGTCACA atttcaactt 467 1.000000 15-1 689 atattattgc TACTGCTCA agagagcttc 697 1.000000 16-1 728 acttggaata GATTTCACC agcctcaaga 736 1.000000 17-1 58 catctaactt TACTGCACG tgaattggat 66 1.000000 18-1 616 gggaattgcg CATTCCACG caaataaaca 624 1.000000 19-1 311 aatccttcaa TTTTTCTGG caacttttct 319 1.000000 20-1 16 tgacaagatc TGTGGCACA agtaggcggc 24 1.000000 21-1 526 tgttgcagct GTTGGCGCG cgtggttttg 534 1.000000 22-1 148 TAAAAATAaa TATCTCGCG ctcacggaag 156 1.000000 23-1 138 ttttgtctca TGTTGTTCG ttttgttata 146 1.000000 24-1 713 tacaatggaa GTTTCCACG TCTTTCTGTa 721 1.000000 25-1 585 tataccagtt TCTTGCATA gatgctacta 593 1.000000 26-1 179 tttcatctca TGTTGCCCA ttttgttcgc 187 1.000000 27-1 744 tctcttcttt CCTTCCTCG aagagtcact 752 1.000000 28-1 549 gatataaatt TTTTTCACG ggaTTTTCGT 557 1.000000 29-1 312 GTTTgttatc TGTTTCTCA tcggtttcgt 320 1.000000 sites: * **** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 724 732 728 -w 1.000000 >2 438 446 442 -w 1.000000 >3 658 666 662 -w 1.000000 >4 452 460 456 -w 1.000000 >5 543 551 547 -w 1.000000 >6 564 572 568 -w 1.000000 >7 517 525 521 -w 1.000000 >8 535 543 539 -w 1.000000 >9 494 502 498 -w 1.000000 >10 301 309 305 -w 1.000000 >11 346 354 350 -w 1.000000 >12 106 114 110 -w 1.000000 >13 551 559 555 -w 1.000000 >14 459 467 463 -w 1.000000 >15 689 697 693 -w 1.000000 >16 728 736 732 -w 1.000000 >17 58 66 62 -w 1.000000 >18 616 624 620 -w 1.000000 >19 311 319 315 -w 1.000000 >20 16 24 20 -w 1.000000 >21 526 534 530 -w 1.000000 >22 148 156 152 -w 1.000000 >23 138 146 142 -w 1.000000 >24 713 721 717 -w 1.000000 >25 585 593 589 -w 1.000000 >26 179 187 183 -w 1.000000 >27 744 752 748 -w 1.000000 >28 549 557 553 -w 1.000000 >29 312 320 316 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 72 0.6 3 . . . 81 0.9 4 . . . 75 0.7 5 . . 42 40 0.4 6 . 80 . . 1.2 8 . 86 . . 1.5 9 . . 58 . 0.8 non- site . 19 . 30 site . 31 . 41 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 9 6 3 . . . 11 9 4 . . . 10 7 5 . . 5 2 4 6 . 16 . . 12 8 . 19 . . 15 9 . . 10 . 8 site . 2 . 2 3 Weighted motif model: POS A C G T Prob 1 0.028292 0.111630 0.142312 0.717766 0.630466 3 0.028292 0.142978 0.016920 0.811810 0.911671 4 0.028292 0.048934 0.173660 0.749114 0.743997 5 0.059639 0.111630 0.424444 0.404287 0.430453 6 0.090987 0.801285 0.048268 0.059459 1.246089 8 0.028292 0.863981 0.048268 0.059459 1.532091 9 0.341771 0.048934 0.581183 0.028111 0.806647 Conservedness in bits: 6.301414 Conservedness in prob: 10.925394 Concensus sequence: TTTGCCG Complete log-likelihood ratio = 233 bits Missing position information = 159 bits Log-likelihood ratio statistic = 73 bits Degrees of freedom = 21 Information per parameter = 3.49 bits seed 3 time: 22 seconds (0.37 minutes) MOTIF A 1-1 541 gaaaatcccg TGAAAAAA atttatatcg 548 1.000000 2-1 649 cacaaataac TGCAACAG cgcctacaat 656 1.000000 3-1 252 cacaatcacg TTTAAAAG ccttgttggc 259 1.000000 4-1 33 gaacttccgt TTCAAAAA tgaatATAAT 40 1.000000 5-1 396 ttgtagaaca TGAAACGA attttgactt 403 1.000000 6-1 645 tacagggcat TGAAACAA ttgcagAAAA 652 1.000000 7-1 96 ttcaatgccc TGTAAAAA accgcatcat 103 1.000000 8-1 106 atctagcagg TCAAACAA CTCATCTTgt 113 1.000000 9-1 607 ctctcaccct TTCAACAA gtttattggg 614 1.000000 10-1 320 gcattccagc TGTAAAAA accagcagat 327 1.000000 11-1 691 agcttcttgt TTTAACAA tacgatttaa 698 1.000000 12-1 700 atcttatcta TTCAAAAA atttctattt 707 1.000000 13-1 408 atagaaaaag TGAAACAG ataaaaattg 415 1.000000 14-1 625 cttgtacggt TATAACAG cacattattg 632 1.000000 15-1 252 ctgcgtcaga TTCAAAAA cctgcaaagt 259 1.000000 16-1 674 tgacatcata TGGAACCA aagtagtaga 681 1.000000 17-1 671 cagcaagcaa TTAAAACG tatataagcg 678 1.000000 18-1 496 taataaggaa TTTAAAAA gtacttcatc 503 1.000000 19-1 641 gtctgtaatt TGAAACAA ataacgtaat 648 1.000000 20-1 255 aataccagaa TGGAACAA acgctgatac 262 1.000000 21-1 192 tacacgaagc TGCAACAG ccgttcgtac 199 1.000000 22-1 649 cgctcacact TGCAAAAA gcatataaaa 656 1.000000 23-1 247 ttccatgata TGGAAAAA cgtataccag 254 1.000000 24-1 95 ctgacctttg TGGAAAAT gacaagatta 102 1.000000 25-1 650 tttaactaaa TGCAAAAA aaaaaatgat 657 1.000000 26-1 567 ACCAAgaacg TATAAAAA tgtGCAGTAG 574 1.000000 27-1 243 ttacagaggc TGGAACAG aagtcaaatg 250 1.000000 28-1 205 aagatgatag TGAAAACA ggcagcccta 212 1.000000 29-1 517 caaggttctt TGCAACAG cactgaaaat 524 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 541 548 544 -w 1.000000 >2 649 656 652 -w 1.000000 >3 252 259 255 -w 1.000000 >4 33 40 36 -w 1.000000 >5 396 403 399 -w 1.000000 >6 645 652 648 -w 1.000000 >7 96 103 99 -w 1.000000 >8 106 113 109 -w 1.000000 >9 607 614 610 -w 1.000000 >10 320 327 323 -w 1.000000 >11 691 698 694 -w 1.000000 >12 700 707 703 -w 1.000000 >13 408 415 411 -w 1.000000 >14 625 632 628 -w 1.000000 >15 252 259 255 -w 1.000000 >16 674 681 677 -w 1.000000 >17 671 678 674 -w 1.000000 >18 496 503 499 -w 1.000000 >19 641 648 644 -w 1.000000 >20 255 262 258 -w 1.000000 >21 192 199 195 -w 1.000000 >22 649 656 652 -w 1.000000 >23 247 254 250 -w 1.000000 >24 95 102 98 -w 1.000000 >25 650 657 653 -w 1.000000 >26 567 574 570 -w 1.000000 >27 243 250 246 -w 1.000000 >28 205 212 208 -w 1.000000 >29 517 524 520 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 94 1.3 2 . . 58 . 0.7 4 94 . . . 1.3 5 94 . . . 1.3 6 50 46 . . 0.7 7 81 . . . 0.8 8 66 . 27 . 0.6 non- site 31 . . . site 59 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 15 13 2 . . 10 . 7 4 15 . . . 13 5 15 . . . 13 6 3 6 . . 7 7 11 . . . 8 8 7 . 1 . 6 site 5 . . . 2 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.016920 0.937202 1.282005 2 0.090987 0.048934 0.581183 0.278895 0.654744 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.937382 0.017586 0.016920 0.028111 1.274533 6 0.498511 0.456458 0.016920 0.028111 0.748419 7 0.811991 0.111630 0.048268 0.028111 0.843682 8 0.655251 0.017586 0.267704 0.059459 0.641964 Conservedness in bits: 6.719878 Conservedness in prob: 10.120285 Concensus sequence: TGAACAA Complete log-likelihood ratio = 255 bits Missing position information = 207 bits Log-likelihood ratio statistic = 48 bits Degrees of freedom = 21 Information per parameter = 2.3 bits MOTIF B 1-1 382 tcacattcgt CATATATAT atacctcttg 390 1.000000 2-1 124 ctcgctaacg CAAAAATTA tcgcgttcgc 132 1.000000 3-1 341 TTTCTTTtta AAACAGGAT gctAAAGCCG 349 1.000000 4-1 227 tctttatcac AAAATATAC aattaaccaa 235 1.000000 5-1 790 aacaaaaaaa AAAAAAAAA aa 798 1.000000 6-1 10 gggcaaaat AAAAAAGGA aaaagagtac 18 1.000000 7-1 561 AAACCAAggt CAAAAAATA acctctaaat 569 1.000000 8-1 697 ctaaataagt GAATTTTGT gccatagggt 705 1.000000 9-1 68 GCACCAGaac CAAAAATCA aaattaagta 76 1.000000 10-1 765 ccgacaagag CAATTTCAA tacggcagca 773 1.000000 11-1 550 tttgtgttcg AAAAAGGGA agattgctcc 558 1.000000 12-1 397 tccaagtaag GAAAAATAT ctgtttactt 405 1.000000 13-1 639 tgccattcat AAAATAGGA aaagataaca 647 1.000000 14-1 143 attatcctac CAAAAAGGT gtgggcttat 151 1.000000 15-1 759 ctaacactaa CAAAAGGAA tacctgacag 767 1.000000 16-1 229 aaagcttctg AAAAAGAGA aaagtgagtg 237 1.000000 17-1 514 catatcttct CAAATTTTA ggttagcttt 522 1.000000 18-1 221 aaagtattaa CATTTACTA aagatccaat 229 1.000000 19-1 347 acaataacgg CAACCAGAA ccgctactga 355 1.000000 20-1 695 gccaaaccaa AATAAATCA aaccaaacca 703 1.000000 21-1 497 tatgtaattg ACGCATTTC cgcttggaac 505 1.000000 22-1 136 gccttaggaa CATAAAAAT aaatatctcg 144 1.000000 23-1 434 aAAAATCAAg AAAAAAACC tgattatgct 442 1.000000 24-1 327 gtaaaatgaa CAAATTATT ttgccttgtc 335 1.000000 25-1 122 tgcaacctac GAAATAGTT aagaagtcgt 130 1.000000 26-1 599 atttgtccag CATAAAAGA aagcgagact 607 1.000000 27-1 165 tgcgggttac AAGAAACGA ttattgataa 173 1.000000 28-1 576 gtttaggtga AAATAAAAT gaacgacaga 584 1.000000 29-1 254 AAAAAaaaaa AAAAAAAAA aaatgttctc 262 1.000000 sites: ****** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 382 390 386 -w 1.000000 >2 124 132 128 -w 1.000000 >3 341 349 345 -w 1.000000 >4 227 235 231 -w 1.000000 >5 790 798 794 -w 1.000000 >6 10 18 14 -w 1.000000 >7 561 569 565 -w 1.000000 >8 697 705 701 -w 1.000000 >9 68 76 72 -w 1.000000 >10 765 773 769 -w 1.000000 >11 550 558 554 -w 1.000000 >12 397 405 401 -w 1.000000 >13 639 647 643 -w 1.000000 >14 143 151 147 -w 1.000000 >15 759 767 763 -w 1.000000 >16 229 237 233 -w 1.000000 >17 514 522 518 -w 1.000000 >18 221 229 225 -w 1.000000 >19 347 355 351 -w 1.000000 >20 695 703 699 -w 1.000000 >21 497 505 501 -w 1.000000 >22 136 144 140 -w 1.000000 >23 434 442 438 -w 1.000000 >24 327 335 331 -w 1.000000 >25 122 130 126 -w 1.000000 >26 599 607 603 -w 1.000000 >27 165 173 169 -w 1.000000 >28 576 584 580 -w 1.000000 >29 254 262 258 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 43 . . 0.5 2 91 . . . 1.1 3 72 . . . 0.6 4 72 . . . 0.6 5 62 . . . 0.5 6 66 . . . 0.5 9 56 . . . 0.3 non- site 31 . . . site 69 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 5 . . 5 2 14 . . . 11 3 9 . . . 6 4 9 . . . 6 5 6 . . . 5 6 7 . . . 5 9 5 . . . 3 site 8 . . . 5 Weighted motif model: POS A C G T Prob 1 0.435815 0.425110 0.110964 0.028111 0.514569 2 0.906034 0.048934 0.016920 0.028111 1.144005 3 0.717947 0.017586 0.079616 0.184851 0.570256 4 0.717947 0.111630 0.016920 0.153503 0.563667 5 0.623903 0.048934 0.016920 0.310243 0.471954 6 0.655251 0.017586 0.142312 0.184851 0.450701 9 0.561207 0.111630 0.016920 0.310243 0.331787 Conservedness in bits: 4.046939 Conservedness in prob: 8.017864 Concensus sequence: CAAAAAA Complete log-likelihood ratio = 154 bits Missing position information = 111 bits Log-likelihood ratio statistic = 42 bits Degrees of freedom = 21 Information per parameter = 2.01 bits MOTIF C 1-1 595 catcggaaat TTGCATTGT gtgaaggttg 603 1.000000 2-1 406 ttctcatgaa CCATTTTGG tcatagccTA 414 1.000000 3-1 626 tcggcattct CGCTATTTG agattttgtc 634 1.000000 4-1 557 aggcttttgt ACAATTTAT agcaagtttt 565 1.000000 5-1 365 ccctgcattg CCTCTTTAT ttgacgttgt 373 1.000000 6-1 101 cacctactcg CCTCCTTTT tttgtgcttc 109 1.000000 7-1 709 aactaccgta CTCTTTTTC cttttttatt 717 1.000000 8-1 291 tgcggttgat TCGTTTTAT acaacttaat 299 1.000000 9-1 510 ccatgcattt CCTTTTTGA gtagtacgtc 518 1.000000 10-1 384 agcccagcta TATTTTTAT agcgtctttt 392 1.000000 11-1 397 cagtaatttt TTTTTTTAA TTTATTTTTG 405 1.000000 12-1 67 gcatctccaa CTCCTTTAT ttgctagtgc 75 1.000000 13-1 674 cactgaagac TTGTTTTAT aagtgtccca 682 1.000000 14-1 361 tgaaaatctt TTGCCTTCA TTGTCATTgt 369 1.000000 15-1 339 aaaagaaatt CCTTCTTTG ggtgttgtgt 347 1.000000 16-1 319 atcaatctgt TCGCTTTAA ggaagatctc 327 1.000000 17-1 447 gtacgtccac CCGTTTCAT acttaaagat 455 1.000000 18-1 263 aatctatcca CTGTTTTCA atatagtgag 271 1.000000 19-1 511 accatgtgga CCCTTTCAA aacagagttg 519 1.000000 20-1 763 ttcaattaaa ACCGCTCAT acgtatacaa 771 1.000000 21-1 748 gtttggctta AATCTTCGA ggaaatttgc 756 1.000000 22-1 369 tgtgttgtgg CTTTTTTCG gtaatagttt 377 1.000000 23-1 777 AGCAGacact CCTTTTTTT cttcatacta 785 1.000000 24-1 509 aaccataatg CTGTTTTAG aatcgcatca 517 1.000000 25-1 363 ctgggtataa CCCTTTTTA gggcagtacc 371 1.000000 26-1 188 atgttgccca TTTTGTTCG ctttgttata 196 1.000000 27-1 318 ccaccagaac ACCCTTTTT atagccacta 326 1.000000 28-1 469 gttatgcaaa ACCCTTTAT atgcacaacc 477 1.000000 29-1 152 gtatgaaatc ACTCTTTTA gatagacctc 160 1.000000 sites: ** **** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 595 603 599 -w 1.000000 >2 406 414 410 -w 1.000000 >3 626 634 630 -w 1.000000 >4 557 565 561 -w 1.000000 >5 365 373 369 -w 1.000000 >6 101 109 105 -w 1.000000 >7 709 717 713 -w 1.000000 >8 291 299 295 -w 1.000000 >9 510 518 514 -w 1.000000 >10 384 392 388 -w 1.000000 >11 397 405 401 -w 1.000000 >12 67 75 71 -w 1.000000 >13 674 682 678 -w 1.000000 >14 361 369 365 -w 1.000000 >15 339 347 343 -w 1.000000 >16 319 327 323 -w 1.000000 >17 447 455 451 -w 1.000000 >18 263 271 267 -w 1.000000 >19 511 519 515 -w 1.000000 >20 763 771 767 -w 1.000000 >21 748 756 752 -w 1.000000 >22 369 377 373 -w 1.000000 >23 777 785 781 -w 1.000000 >24 509 517 513 -w 1.000000 >25 363 371 367 -w 1.000000 >26 188 196 192 -w 1.000000 >27 318 326 322 -w 1.000000 >28 469 477 473 -w 1.000000 >29 152 160 156 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 49 . . 0.4 2 . 52 . . 0.5 4 . 33 . 56 0.5 5 . . . 72 0.6 6 . . . 94 1.3 7 . . . 81 0.9 9 . . . 44 0.1 non- site . 19 . 30 site . 24 . 61 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 7 . . 4 2 . 7 . . 5 4 . 3 . 5 5 5 . . . 9 6 6 . . . 15 13 7 . . . 11 9 9 . . . 2 1 site . 1 . 6 4 Weighted motif model: POS A C G T Prob 1 0.216379 0.487806 0.016920 0.278895 0.437388 2 0.090987 0.519154 0.048268 0.341591 0.533037 4 0.059639 0.331066 0.048268 0.561027 0.502652 5 0.090987 0.142978 0.048268 0.717766 0.554220 6 0.028292 0.017586 0.016920 0.937202 1.282005 7 0.028292 0.142978 0.016920 0.811810 0.911671 9 0.310423 0.048934 0.205008 0.435635 0.145826 Conservedness in bits: 4.366798 Conservedness in prob: 8.319514 Concensus sequence: CCTTTTT Complete log-likelihood ratio = 163 bits Missing position information = 136 bits Log-likelihood ratio statistic = 27 bits Degrees of freedom = 21 Information per parameter = 1.31 bits MOTIF D 1-1 219 tgctagcagc AAAACCAA agtatactta 226 1.000000 2-1 590 tgccgtacaa AAAATCGA tctagctcaa 597 1.000000 3-1 353 ACAGGATgct AAAGCCGA caccgttcaa 360 1.000000 4-1 46 AAAAAtgaat ATAATCGT acgtttacct 53 1.000000 5-1 643 cgaaccaaga AAATGAAA acaatatata 650 1.000000 6-1 659 ACAAttgcag AAAAGCAA catactaata 666 1.000000 7-1 550 aaaagaagga AAAACCAA ggtCAAAAAA 557 1.000000 8-1 510 agctcgtatc AAAATAAA actagtcagt 517 1.000000 9-1 668 tgctaaaagc TTATTCTA cataaatata 675 1.000000 10-1 640 tttacacatc TAATGCAA gtttaagtgc 647 1.000000 11-1 569 agattgctcc AAACGCAA ataaggagga 576 1.000000 12-1 638 tcaaattatt AAAAGAAA ataaaactat 645 1.000000 13-1 486 aaaacagcct AAAAAAGA ttgaacaact 493 1.000000 14-1 333 tgataactca AAAAACAA gagtacaata 340 1.000000 15-1 164 ccattgtctc AAAATAGC aaaaaacgca 171 1.000000 16-1 518 gaaataaatc AAATAAGA actaaaatac 525 1.000000 17-1 769 cgagcattaa CAATAAAA gctAAAAAAA 776 1.000000 18-1 61 tcttgcaccc ATAATAGA aaattatgga 68 1.000000 19-1 792 caagtttctg AAAATCAA a 799 1.000000 20-1 730 AACAAaaaca AAAACAAA aacaggctaa 737 1.000000 21-1 345 ccgtctagat AACTCAGA ttcacgctcg 352 1.000000 22-1 107 cgcgttgcag AAATACGA ggtagacacg 114 1.000000 23-1 425 ttatgataaa AAAATCAA gAAAAAAACC 432 1.000000 24-1 14 cgagcaactc CAGAGAAA aagccaaagg 21 1.000000 25-1 19 tgcctacaat AAAAGCAA ttataactga 26 1.000000 26-1 554 acctttaaaa AAAACCAA gaacgTATAA 561 1.000000 27-1 462 attacctctg AAACAAAG ccgagacggg 469 1.000000 28-1 524 gcctacatac AAAAGAGC gaaaggcgat 531 1.000000 29-1 285 agtgtaaact TAATCAAA agctTATTTG 292 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 219 226 222 -w 1.000000 >2 590 597 593 -w 1.000000 >3 353 360 356 -w 1.000000 >4 46 53 49 -w 1.000000 >5 643 650 646 -w 1.000000 >6 659 666 662 -w 1.000000 >7 550 557 553 -w 1.000000 >8 510 517 513 -w 1.000000 >9 668 675 671 -w 1.000000 >10 640 647 643 -w 1.000000 >11 569 576 572 -w 1.000000 >12 638 645 641 -w 1.000000 >13 486 493 489 -w 1.000000 >14 333 340 336 -w 1.000000 >15 164 171 167 -w 1.000000 >16 518 525 521 -w 1.000000 >17 769 776 772 -w 1.000000 >18 61 68 64 -w 1.000000 >19 792 799 795 -w 1.000000 >20 730 737 733 -w 1.000000 >21 345 352 348 -w 1.000000 >22 107 114 110 -w 1.000000 >23 425 432 428 -w 1.000000 >24 14 21 17 -w 1.000000 >25 19 26 22 -w 1.000000 >26 554 561 557 -w 1.000000 >27 462 469 465 -w 1.000000 >28 524 531 527 -w 1.000000 >29 285 292 288 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 78 . . . 0.7 2 84 . . . 0.9 3 87 . . . 1.0 4 59 . . . 0.3 6 47 49 . . 0.8 7 59 . 33 . 0.6 8 81 . . . 0.8 non- site 31 . . . site 74 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 10 . . . 7 2 12 . . . 9 3 13 . . . 10 4 6 . . . 3 6 3 7 . . 8 7 6 . 3 . 6 8 11 . . . 8 site 9 . . . 6 Weighted motif model: POS A C G T Prob 1 0.780643 0.080282 0.016920 0.122155 0.711672 2 0.843339 0.017586 0.016920 0.122155 0.929869 3 0.874687 0.048934 0.048268 0.028111 1.015793 4 0.592555 0.080282 0.048268 0.278895 0.313147 6 0.467163 0.487806 0.016920 0.028111 0.768907 7 0.592555 0.017586 0.330400 0.059459 0.621817 8 0.811991 0.080282 0.048268 0.059459 0.786182 Conservedness in bits: 5.147387 Conservedness in prob: 8.832015 Concensus sequence: AAAACAA Complete log-likelihood ratio = 193 bits Missing position information = 154 bits Log-likelihood ratio statistic = 38 bits Degrees of freedom = 21 Information per parameter = 1.85 bits MOTIF E 1-1 49 tccataccct TCTCGATAAGATAATTCC ccatgatacc 66 1.000000 2-1 423 GGtcatagcc TATTGGTTTGTGCCGTTC tgcacgtttt 440 1.000000 3-1 718 tcgattttgg TCTACCTATAAACATTCT ctctctcatc 735 1.000000 4-1 130 gcttgtgcta TCTCAAGAATTGCATTTT gtaataacaa 147 1.000000 5-1 688 aagacattgg TATATATTTGTAAAATGT ctgttaaatg 705 1.000000 6-1 456 gagagggcag TTTACTTTCACATACTCT tttatctttc 473 1.000000 7-1 664 attctactaa GATCTTTAAAGCAATTCC tttccggttt 681 1.000000 8-1 429 tagtgatatt TGTTTGTTTACCATTTTT gttcttattt 446 1.000000 9-1 91 taagtagtat TCTTTATGTGCATTTTTC cctttaaatt 108 1.000000 10-1 666 gcttcttaag TGTTTTTTTCTTTAGTCT tataagttct 683 1.000000 11-1 471 ctggatatga ATTATTTATTACCAATAT aaggagcatg 488 1.000000 12-1 667 ctttttgttc ACTCTGTCTTGAGAGTGT atattatctt 684 1.000000 13-1 599 ttagattact TCTTTTTAGTTGACTTTT ttgagacgtt 616 1.000000 14-1 395 aatccccgat TATCATTGTCAGCAATTT cggagaaggg 412 1.000000 15-1 275 aaagtttgtt TTTATAATTTTGGCGTTC agcaagcgcg 292 1.000000 16-1 452 ccatttgatt TATACTTGTTTCAGATCC tttgtcgggc 469 1.000000 17-1 535 ttagctttca ATTGTAAAGTCTCTTTTT ggatattgca 552 1.000000 18-1 646 tgtaaataag AATACGTACTGTAACTGT gtcacactag 663 1.000000 19-1 530 aacagagttg TATCTCTGCAGGATGCCC tttttgacgt 547 1.000000 20-1 297 acacgcagaa GCTAGATACTTCCAGTCT tccacacacc 314 1.000000 21-1 258 ccaacgtgcg CGTAATTGGACACACTCT ttaccacgct 275 1.000000 22-1 49 aatggcgtgg TATTTTTAAAGGGCCTTT accagccact 66 1.000000 23-1 565 cgatgttttg GGTATTTTCCACCAACTT tattggcaag 582 1.000000 24-1 584 ctatttcgga TTTACTTCTAGTCTATGT atagatttgt 601 1.000000 25-1 548 gtattttgtg TTTTTTACAACAACCTCT cgactattgt 565 1.000000 26-1 448 tcttgcagta TGTATCAAAACCAAATCC tgataggctg 465 1.000000 27-1 545 CACAGccatt AGTGTGAAATTTGATTTT cttggccaaa 562 1.000000 28-1 705 GCAAGAGgta TATATATATGACGAATGT gaccaacata 722 1.000000 29-1 606 ttatataccc TTTTCGTGGTCCTTTTTC ctaatttgcc 623 1.000000 sites: * * * * * * * 5 10 15 (29 sites in 29 sequences) Conservedness in sites: >1 49 66 57 -w 1.000000 >2 423 440 431 -w 1.000000 >3 718 735 726 -w 1.000000 >4 130 147 138 -w 1.000000 >5 688 705 696 -w 1.000000 >6 456 473 464 -w 1.000000 >7 664 681 672 -w 1.000000 >8 429 446 437 -w 1.000000 >9 91 108 99 -w 1.000000 >10 666 683 674 -w 1.000000 >11 471 488 479 -w 1.000000 >12 667 684 675 -w 1.000000 >13 599 616 607 -w 1.000000 >14 395 412 403 -w 1.000000 >15 275 292 283 -w 1.000000 >16 452 469 460 -w 1.000000 >17 535 552 543 -w 1.000000 >18 646 663 654 -w 1.000000 >19 530 547 538 -w 1.000000 >20 297 314 305 -w 1.000000 >21 258 275 266 -w 1.000000 >22 49 66 57 -w 1.000000 >23 565 582 573 -w 1.000000 >24 584 601 592 -w 1.000000 >25 548 565 556 -w 1.000000 >26 448 465 456 -w 1.000000 >27 545 562 553 -w 1.000000 >28 705 722 713 -w 1.000000 >29 606 623 614 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 66 0.4 3 . . . 94 1.3 5 . . . 56 0.3 7 . . . 75 0.7 14 56 . . . 0.2 16 . . . 87 1.1 18 . 30 . 66 0.7 non- site . . . 30 site . . . 69 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 7 4 3 . . . 15 13 5 . . . 5 3 7 . . . 10 7 14 5 . . . 2 16 . . . 13 11 18 . 2 . 7 7 site . . . 8 5 Weighted motif model: POS A C G T Prob 1 0.185031 0.048934 0.110964 0.655071 0.390813 3 0.028292 0.017586 0.016920 0.937202 1.282005 5 0.122335 0.205674 0.110964 0.561027 0.252754 7 0.185031 0.017586 0.048268 0.749114 0.662656 14 0.561207 0.174326 0.048268 0.216199 0.245614 16 0.028292 0.080282 0.016920 0.874506 1.053330 18 0.028292 0.299718 0.016920 0.655071 0.742352 Conservedness in bits: 4.629524 Conservedness in prob: 8.252126 Concensus sequence: TTTTATT Complete log-likelihood ratio = 175 bits Missing position information = 154 bits Log-likelihood ratio statistic = 21 bits Degrees of freedom = 21 Information per parameter = 1 bits MOTIF F 1-1 506 gcatgctctg TCGTTCATTTTATT ttcacctaaa 519 1.000000 2-1 315 cggattactg TAATTGCTCGTGTT ggattgagcg 328 1.000000 3-1 440 actattgacg TGGAGATTTTTTTA tcccgcatat 453 1.000000 4-1 173 tgggaaaaat TATATAGATTTTCT actattatgt 186 1.000000 5-1 734 ctcaggttct TGCTTGTCTTTGGT agaagaaatt 747 1.000000 6-1 158 tgctgttatt TAGAGGTTATTTTT tgaccttggt 171 1.000000 7-1 467 tttatatgga TCGCGTGATGTTTT aagccttctt 480 1.000000 8-1 4 ctc TGTATAGTCTTCTT ccattctctt 17 1.000000 9-1 242 gtattaaaca TGTTTTCTATTTGC cgaataagca 255 1.000000 10-1 240 agccctattt TAGCGGATTTTAGC cttacatttc 253 1.000000 11-1 406 tTTTTTTTAA TTTATTTTTGTGTT gcaagcgttg 419 1.000000 12-1 488 TTCTTTtgtt TGCATATCTTTTTT tttcagcgat 501 1.000000 13-1 573 atagtaccac TACGTTCCTTTTAC aattagatta 586 1.000000 14-1 191 tagatctttt TAGATCCTTTTGAA tcttccaatt 204 1.000000 15-1 676 TCGTGtctgg TATATATTATTGCT actgctcaag 689 1.000000 16-1 391 cctacaggcg TGATTTTCTGTCTA aacattgcca 404 1.000000 17-1 707 tgatctatca TCAATAATTATCGT gaacttttcc 720 1.000000 18-1 194 gatagcacct TACCTATTTTTATC aaaaaagtat 207 1.000000 19-1 426 tataacttta TTTTTTTTTATTAA ttgggctgca 439 1.000000 20-1 630 gttgtacata TATCTGCTTTTTTT ccctttttac 643 1.000000 21-1 706 TTTTTgtttt TGTTTTGTTTTGGT ttggtttgat 719 1.000000 22-1 718 ttatcttagg TTTATGCCTTTTCT ggttctcaag 731 1.000000 23-1 370 gtgacaatta ACAGGGTATTTTTT ttttcacttc 383 1.000000 24-1 734 TTTCTGTatt TTCATACCTTTAAT tataggaaaa 747 1.000000 25-1 333 aaatttggac TAAAGGGTTTTTAT cgaggactgg 346 1.000000 26-1 36 ccagcttgat TCGCGGGCTGTTAC ttatcctata 49 1.000000 27-1 596 TTGTTacaaa TTATTGATTTTAAT atatatctcg 609 1.000000 28-1 291 caaagctgat ACCATCCTTTTATT ctctacaccg 304 1.000000 29-1 297 ATCAAAagct TATTTGTTTGTTAT ctgtttctca 310 1.000000 sites: * * **** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 506 519 512 -w 1.000000 >2 315 328 321 -w 1.000000 >3 440 453 446 -w 1.000000 >4 173 186 179 -w 1.000000 >5 734 747 740 -w 1.000000 >6 158 171 164 -w 1.000000 >7 467 480 473 -w 1.000000 >8 4 17 10 -w 1.000000 >9 242 255 248 -w 1.000000 >10 240 253 246 -w 1.000000 >11 406 419 412 -w 1.000000 >12 488 501 494 -w 1.000000 >13 573 586 579 -w 1.000000 >14 191 204 197 -w 1.000000 >15 676 689 682 -w 1.000000 >16 391 404 397 -w 1.000000 >17 707 720 713 -w 1.000000 >18 194 207 200 -w 1.000000 >19 426 439 432 -w 1.000000 >20 630 643 636 -w 1.000000 >21 706 719 712 -w 1.000000 >22 718 731 724 -w 1.000000 >23 370 383 376 -w 1.000000 >24 734 747 740 -w 1.000000 >25 333 346 339 -w 1.000000 >26 36 49 42 -w 1.000000 >27 596 609 602 -w 1.000000 >28 291 304 297 -w 1.000000 >29 297 310 303 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.0 5 . . 24 72 0.8 8 . 24 . 62 0.5 9 . . . 78 0.7 10 . . . 69 0.6 11 . . . 94 1.3 14 . . . 66 0.5 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 10 5 . . 1 9 8 8 . 1 . 6 5 9 . . . 10 7 10 . . . 8 6 11 . . . 15 13 14 . . . 7 5 site . . . 11 7 Weighted motif model: POS A C G T Prob 1 0.090987 0.017586 0.016920 0.874506 1.030802 5 0.028292 0.017586 0.236356 0.717766 0.794753 8 0.122335 0.237022 0.016920 0.623723 0.477505 9 0.122335 0.080282 0.016920 0.780462 0.717260 10 0.090987 0.017586 0.205008 0.686418 0.596004 11 0.028292 0.017586 0.016920 0.937202 1.282005 14 0.153683 0.174326 0.016920 0.655071 0.468293 Conservedness in bits: 5.366622 Conservedness in prob: 8.895745 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 204 bits Missing position information = 166 bits Log-likelihood ratio statistic = 37 bits Degrees of freedom = 21 Information per parameter = 1.79 bits MOTIF G 1-1 404 cctcttgcca GCAACAG gccagttata 410 1.000000 2-1 746 agtaaattta GAAACAG caagcctcat 752 1.000000 3-1 681 tattacggat GCAAGAA aaggagaagg 687 1.000000 4-1 398 tatttcctct GCAGCAA caagtttcct 404 1.000000 5-1 173 gacagcaatg GCTCAAG gttatgctgc 179 1.000000 6-1 775 AAGGAAAtaa GGCAGAG aaaaagaaag 781 1.000000 7-1 591 acagcatgat GCAACAG ctcaaaagac 597 1.000000 8-1 265 agtaagccat GCAGCAA tgtaaagagt 271 1.000000 9-1 58 AAaaacaacg GCACCAG aacCAAAAAT 64 1.000000 10-1 165 acatcattgc ACAACAG aatttcgttt 171 1.000000 11-1 329 gtggtctaag GCGGCAG acttaagatc 335 1.000000 12-1 523 caattttcaa CATGCAG ccatttcacc 529 1.000000 13-1 211 ggtccagttt GCACAAG acaccctgaa 217 1.000000 14-1 765 ctgaaaatct ACACCAC ttttcgataa 771 1.000000 15-1 104 gctgaggaac GCCCCAG tcgtacaaaa 110 1.000000 16-1 199 tttaagcgaa GAAGCAG ccttctcaat 205 1.000000 17-1 312 cttaatttta ACAGCAG ttaccacttg 318 1.000000 18-1 535 gaattgcact GAACGAG aagctttacg 541 1.000000 19-1 221 atggtagacc GCAACAG aatggtcaac 227 1.000000 20-1 20 aagatctgtg GCACAAG taggcggcat 26 1.000000 21-1 289 ccacgctgtt GCAGCAG cgagtccagc 295 1.000000 22-1 572 ggatgcttcc GCAGAAG tgcccgtagg 578 1.000000 23-1 765 gtgtagatta GCAGCAG acactCCTTT 771 1.000000 24-1 70 ttacgatgct GCAGAAG ataacgaact 76 1.000000 25-1 389 accagcaaac GCTGCAG ttttttACAT 395 1.000000 26-1 578 ATAAAAAtgt GCAGTAG tctcatttgt 584 1.000000 27-1 533 ataatgacgc GACACAG ccattAGTGT 539 1.000000 28-1 695 cctgttgctg GCAAGAG gtaTATATAT 701 1.000000 29-1 189 ttacataatg GCACCAG taataaatga 195 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 404 410 407 -w 1.000000 >2 746 752 749 -w 1.000000 >3 681 687 684 -w 1.000000 >4 398 404 401 -w 1.000000 >5 173 179 176 -w 1.000000 >6 775 781 778 -w 1.000000 >7 591 597 594 -w 1.000000 >8 265 271 268 -w 1.000000 >9 58 64 61 -w 1.000000 >10 165 171 168 -w 1.000000 >11 329 335 332 -w 1.000000 >12 523 529 526 -w 1.000000 >13 211 217 214 -w 1.000000 >14 765 771 768 -w 1.000000 >15 104 110 107 -w 1.000000 >16 199 205 202 -w 1.000000 >17 312 318 315 -w 1.000000 >18 535 541 538 -w 1.000000 >19 221 227 224 -w 1.000000 >20 20 26 23 -w 1.000000 >21 289 295 292 -w 1.000000 >22 572 578 575 -w 1.000000 >23 765 771 768 -w 1.000000 >24 70 76 73 -w 1.000000 >25 389 395 392 -w 1.000000 >26 578 584 581 -w 1.000000 >27 533 539 536 -w 1.000000 >28 695 701 698 -w 1.000000 >29 189 195 192 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 80 . 1.3 2 . 74 . . 1.1 3 72 . . . 0.5 4 . 27 39 . 0.5 5 . 61 . . 0.7 6 94 . . . 1.3 7 . . 80 . 1.3 non- site 31 19 18 . site 37 27 33 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 17 . 13 2 . 14 . . 11 3 9 . . . 5 4 . 1 4 . 5 5 . 10 . . 7 6 15 . . . 13 7 . . 17 . 13 site 1 1 3 . 4 Weighted motif model: POS A C G T Prob 1 0.122335 0.048934 0.800619 0.028111 1.326128 2 0.185031 0.738589 0.048268 0.028111 1.097539 3 0.717947 0.111630 0.048268 0.122155 0.519635 4 0.310423 0.268370 0.393096 0.028111 0.452375 5 0.185031 0.613197 0.142312 0.059459 0.685280 6 0.937382 0.017586 0.016920 0.028111 1.274533 7 0.122335 0.048934 0.800619 0.028111 1.326128 Conservedness in bits: 6.681620 Conservedness in prob: 11.682392 Concensus sequence: GCAGCAG Complete log-likelihood ratio = 246 bits Missing position information = 178 bits Log-likelihood ratio statistic = 67 bits Degrees of freedom = 21 Information per parameter = 3.23 bits MOTIF H 1-1 444 atgtgacgca CTTCTGA aacagtattg 450 1.000000 2-1 385 actcataata CTCCTGG ttctttctca 391 1.000000 3-1 646 gattttgtct TTTTTTA cctggtattt 652 1.000000 4-1 752 gtgattgagc TTTTTGA gagaataacc 758 1.000000 5-1 332 tggtgcttcc TCTTTGG gatgataaaa 338 1.000000 6-1 348 ttcgttcgga CTTTTTA acttacacac 354 1.000000 7-1 72 agtatgttgc TTTTCTG caattgtttc 78 1.000000 8-1 759 ttaatatttg TTTTGGC atttgaaact 765 1.000000 9-1 479 ctcacttttc CTTTTTC gctgcctctt 485 1.000000 10-1 457 gcaggtggat TTTTTTG gcagatacta 463 1.000000 11-1 709 tacgatttaa TCTCGGA gtagttaagc 715 1.000000 12-1 727 tacttttata TTTCTTG accatccttt 733 1.000000 13-1 102 ggcaacccac TTACTTA catctgaaaa 108 1.000000 14-1 44 ttattcaaga TCTTTGA tgtgtcatca 50 1.000000 15-1 664 tgatggattg TTTCGTG tctggTATAT 670 1.000000 16-1 361 ctctctaatt ATTCTGG agatatgtgg 367 1.000000 17-1 595 gtaacataat TTTCTGA aacaatatta 601 1.000000 18-1 763 aagtatacat ATTCTGG ttcaacaact 769 1.000000 19-1 601 gctgtctcat TTTGGTG cgatgatgAA 607 1.000000 20-1 328 acacaccaga TTTCTTG taaggcaatc 334 1.000000 21-1 418 gccgcatgta TTTGTTG ctgcagagcg 424 1.000000 22-1 772 tcgttgattc TTTTTGG taagatctcg 778 1.000000 23-1 128 gaaggtcggg TTTTGTC tcatgttgtt 134 1.000000 24-1 724 tttccacgtc TTTCTGT attTTCATAC 730 1.000000 25-1 787 tacgcaaaca TTTTTGG ctaccgg 793 1.000000 26-1 668 gacaaaattg TTTCTGC ctccaacggt 674 1.000000 27-1 584 taggtataat ATTTGTT acaaaTTATT 590 1.000000 28-1 146 ctatatcgaa ATTCTGG aaaaatccct 152 1.000000 29-1 480 ttatattctc TTTTTTG ttttattctt 486 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 444 450 447 -w 1.000000 >2 385 391 388 -w 1.000000 >3 646 652 649 -w 1.000000 >4 752 758 755 -w 1.000000 >5 332 338 335 -w 1.000000 >6 348 354 351 -w 1.000000 >7 72 78 75 -w 1.000000 >8 759 765 762 -w 1.000000 >9 479 485 482 -w 1.000000 >10 457 463 460 -w 1.000000 >11 709 715 712 -w 1.000000 >12 727 733 730 -w 1.000000 >13 102 108 105 -w 1.000000 >14 44 50 47 -w 1.000000 >15 664 670 667 -w 1.000000 >16 361 367 364 -w 1.000000 >17 595 601 598 -w 1.000000 >18 763 769 766 -w 1.000000 >19 601 607 604 -w 1.000000 >20 328 334 331 -w 1.000000 >21 418 424 421 -w 1.000000 >22 772 778 775 -w 1.000000 >23 128 134 131 -w 1.000000 >24 724 730 727 -w 1.000000 >25 787 793 790 -w 1.000000 >26 668 674 671 -w 1.000000 >27 584 590 587 -w 1.000000 >28 146 152 149 -w 1.000000 >29 480 486 483 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 69 0.5 2 . . . 84 1.0 3 . . . 87 1.0 4 . 43 . 47 0.6 5 . . . 72 0.7 6 . . 49 47 0.8 7 . . 49 . 0.4 non- site . . . 30 site . . . 62 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 8 5 2 . . . 12 10 3 . . . 13 10 4 . 5 . 3 6 5 . . . 9 7 6 . . 7 3 8 7 . . 7 . 4 site . . . 6 4 Weighted motif model: POS A C G T Prob 1 0.153683 0.142978 0.016920 0.686418 0.512350 2 0.028292 0.111630 0.016920 0.843158 0.975223 3 0.059639 0.048934 0.016920 0.874506 1.013874 4 0.028292 0.425110 0.079616 0.466983 0.565188 5 0.028292 0.048934 0.205008 0.717766 0.705663 6 0.028292 0.017586 0.487139 0.466983 0.795208 7 0.279075 0.142978 0.487139 0.090807 0.409433 Conservedness in bits: 4.976939 Conservedness in prob: 9.224344 Concensus sequence: TTTCTGG Complete log-likelihood ratio = 188 bits Missing position information = 128 bits Log-likelihood ratio statistic = 60 bits Degrees of freedom = 21 Information per parameter = 2.87 bits MOTIF I 1-1 140 aacaattgga CAAAATA tacgtttccg 146 1.000000 2-1 358 taagtctcaa AAAAAAA ttgggttact 364 1.000000 3-1 766 tcaatagtgc AAAAATA ggtaactaac 772 1.000000 4-1 344 gcaagaatgc AAGAAAA attgatgtga 350 1.000000 5-1 767 tatagtaaac AAACAAA caaacaaaca 773 1.000000 6-1 765 tttgaactac AAGGAAA taaGGCAGAG 771 1.000000 7-1 142 cagaaacaaa AAAAAAA aaagtaaaaa 148 1.000000 8-1 483 ctagtatatg AAAGATA ccactgtcgt 489 1.000000 9-1 43 aagacgagaa AAAATAA aaacaacgGC 49 1.000000 10-1 413 gatgacgcga AAAGTAG acttcgcgta 419 1.000000 11-1 616 tggaaaaata AAAATAA aaagtggtct 622 1.000000 12-1 314 ttacaggatg AAAAAAA aaagacattg 320 1.000000 13-1 368 tttcaaaatg AAACAAA cgccgttgtc 374 1.000000 14-1 673 tcagcccagt AATAAAA catttacata 679 1.000000 15-1 225 cctacacgag AAAAGAA acatgattga 231 1.000000 16-1 121 acgaaatttg AAGCAAA aaggaaaatc 127 1.000000 17-1 780 AATAAAAgct AAAAAAA ccaaaaaatt 786 1.000000 18-1 572 gtctatatta AAAAAAA ggcagcataa 578 1.000000 19-1 616 TGcgatgatg AAACAAA catgaaacgt 622 1.000000 20-1 718 aaaccaaaac AAAACAA aaacaAAAAC 724 1.000000 21-1 787 taaaaaggga AAAAAAG cagatat 793 1.000000 22-1 749 aagtcagtaa CAACAAA tacccatcgt 755 1.000000 23-1 74 tctcggatct AAACTAA ttgttcaggc 80 1.000000 24-1 453 acactgaaac AAACTTA ttgcactcct 459 1.000000 25-1 679 cgaatgtaaa CAAAAAA aactgtctag 685 1.000000 26-1 711 ctcacgattc AAGAATA tttcgtttat 717 1.000000 27-1 787 aagccaaacc AAAAAAA ctataca 793 1.000000 28-1 401 tgattattaa AAACAAA cgtaaactca 407 1.000000 29-1 242 accggccaaa AAAAAAA aaaaaAAAAA 248 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 140 146 143 -w 1.000000 >2 358 364 361 -w 1.000000 >3 766 772 769 -w 1.000000 >4 344 350 347 -w 1.000000 >5 767 773 770 -w 1.000000 >6 765 771 768 -w 1.000000 >7 142 148 145 -w 1.000000 >8 483 489 486 -w 1.000000 >9 43 49 46 -w 1.000000 >10 413 419 416 -w 1.000000 >11 616 622 619 -w 1.000000 >12 314 320 317 -w 1.000000 >13 368 374 371 -w 1.000000 >14 673 679 676 -w 1.000000 >15 225 231 228 -w 1.000000 >16 121 127 124 -w 1.000000 >17 780 786 783 -w 1.000000 >18 572 578 575 -w 1.000000 >19 616 622 619 -w 1.000000 >20 718 724 721 -w 1.000000 >21 787 793 790 -w 1.000000 >22 749 755 752 -w 1.000000 >23 74 80 77 -w 1.000000 >24 453 459 456 -w 1.000000 >25 679 685 682 -w 1.000000 >26 711 717 714 -w 1.000000 >27 787 793 790 -w 1.000000 >28 401 407 404 -w 1.000000 >29 242 248 245 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 84 . . . 1.0 2 94 . . . 1.3 3 78 . . . 0.8 4 59 27 . . 0.5 5 72 . . . 0.5 6 78 . . . 0.8 7 87 . . . 1.0 non- site 31 . . . site 83 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 12 . . . 10 2 15 . . . 13 3 10 . . . 8 4 6 1 . . 5 5 9 . . . 5 6 10 . . . 8 7 13 . . . 10 site 12 . . . 9 Weighted motif model: POS A C G T Prob 1 0.843339 0.111630 0.016920 0.028111 0.968591 2 0.937382 0.017586 0.016920 0.028111 1.274533 3 0.780643 0.017586 0.142312 0.059459 0.778374 4 0.592555 0.268370 0.110964 0.028111 0.497228 5 0.717947 0.048934 0.048268 0.184851 0.537612 6 0.780643 0.017586 0.016920 0.184851 0.779162 7 0.874687 0.017586 0.079616 0.028111 1.048438 Conservedness in bits: 5.883938 Conservedness in prob: 9.308548 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 224 bits Missing position information = 170 bits Log-likelihood ratio statistic = 53 bits Degrees of freedom = 21 Information per parameter = 2.56 bits MOTIF J 1-1 93 gtgcggcgtg TTGTCTGT catcttggag 100 1.000000 2-1 722 acagtatgtg TTGTTTTT atttcgagta 729 1.000000 3-1 330 ccctacaggg CTTTCTTT ttaAAACAGG 337 1.000000 4-1 112 ccgtgcccta TTATTCTT gcttgtgcta 119 1.000000 5-1 527 tttttaaaac TTTTTTTT tttgaaagtc 534 1.000000 6-1 583 aaatttttac TTTTTTTT tttttgtttc 590 1.000000 7-1 517 agtcgctgct TTTTTCTC gggctgagta 524 1.000000 8-1 114 ggTCAAACAA CTCATCTT gttgctgttc 121 1.000000 9-1 284 tcattgttcc TTTCCCTT tatttaagct 291 1.000000 10-1 713 cactttataa TTCTCCTT tataaaagta 720 1.000000 11-1 35 ttattacttc TTCTTTGT tttatgtgtt 42 1.000000 12-1 476 cagaatgcaa CTTTCTTT tgttTGCATA 483 1.000000 13-1 54 atagcaagca AGTTCTTT taggtttaaa 61 1.000000 14-1 370 tTTGCCTTCA TTGTCATT gtcattgaat 377 1.000000 15-1 708 agagagcttc TTTTTTTA tgctatcgaa 715 1.000000 16-1 272 agctgttcac TTGTTTTT atcgtatatc 279 1.000000 17-1 224 ttttcttttc TTTTCCTT tttttacaat 231 1.000000 18-1 331 gaaatttata CTGTCTTT tgcacttcaa 338 1.000000 19-1 485 tcaatccttc TTTTGCTT ccatatttac 492 1.000000 20-1 360 gtaatcttcg TTTTCATT actatctcca 367 1.000000 21-1 693 tagcctgttt TTGTTTTT gttttTGTTT 700 1.000000 22-1 242 agtcgtatat TTTTCTTT atactgctag 249 1.000000 23-1 663 aacgtttttt TTTTTTTT ttaaaggcat 670 1.000000 24-1 559 gtacatggtg CTTTCCTT atgctcacta 566 1.000000 25-1 402 GCAGtttttt ACATCTTT gagactcttt 409 1.000000 26-1 293 cgaagtgtag TTGTTTGA gtacgttaat 300 1.000000 27-1 722 tatacatttc TTCTTCTT cttctctctt 729 1.000000 28-1 318 tacaccgaat TTGTCTTT actcctatgc 325 1.000000 29-1 572 cgcctgctta TTCTTTTT ccagctctct 579 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 93 100 96 -w 1.000000 >2 722 729 725 -w 1.000000 >3 330 337 333 -w 1.000000 >4 112 119 115 -w 1.000000 >5 527 534 530 -w 1.000000 >6 583 590 586 -w 1.000000 >7 517 524 520 -w 1.000000 >8 114 121 117 -w 1.000000 >9 284 291 287 -w 1.000000 >10 713 720 716 -w 1.000000 >11 35 42 38 -w 1.000000 >12 476 483 479 -w 1.000000 >13 54 61 57 -w 1.000000 >14 370 377 373 -w 1.000000 >15 708 715 711 -w 1.000000 >16 272 279 275 -w 1.000000 >17 224 231 227 -w 1.000000 >18 331 338 334 -w 1.000000 >19 485 492 488 -w 1.000000 >20 360 367 363 -w 1.000000 >21 693 700 696 -w 1.000000 >22 242 249 245 -w 1.000000 >23 663 670 666 -w 1.000000 >24 559 566 562 -w 1.000000 >25 402 409 405 -w 1.000000 >26 293 300 296 -w 1.000000 >27 722 729 725 -w 1.000000 >28 318 325 321 -w 1.000000 >29 572 579 575 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 72 0.6 2 . . . 87 1.0 4 . . . 87 1.0 5 . 46 . 47 0.7 6 . 30 . 59 0.5 7 . . . 84 1.0 8 . . . 84 0.9 non- site . . . 30 site . . . 78 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 9 6 2 . . . 13 10 4 . . . 13 10 5 . 6 . 3 7 6 . 2 . 6 5 7 . . . 12 10 8 . . . 12 9 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.090987 0.174326 0.016920 0.717766 0.625852 2 0.028292 0.048934 0.048268 0.874506 1.022705 4 0.059639 0.048934 0.016920 0.874506 1.013874 5 0.028292 0.456458 0.048268 0.466983 0.651205 6 0.090987 0.299718 0.016920 0.592375 0.524924 7 0.028292 0.017586 0.110964 0.843158 0.978671 8 0.090987 0.048934 0.016920 0.843158 0.903181 Conservedness in bits: 5.720412 Conservedness in prob: 9.285184 Concensus sequence: TTTCTTT Complete log-likelihood ratio = 215 bits Missing position information = 169 bits Log-likelihood ratio statistic = 46 bits Degrees of freedom = 21 Information per parameter = 2.21 bits seed 4 time: 24 seconds (0.40 minutes) MOTIF A 1-1 543 AAatcccgtg AAAAAAA tttatatcgc 549 1.000000 2-1 356 cgtaagtctc AAAAAAA aattgggtta 362 1.000000 3-1 596 ACTTGTAAat AGAAAAA tgatgttcta 602 1.000000 4-1 706 acatactgct CAAAAAA tcttcataac 712 1.000000 5-1 766 ttatagtaaa CAAACAA acaaacaaac 772 1.000000 6-1 780 aataaggcag AGAAAAA gaaaggaaaa 786 1.000000 7-1 622 caagaagcac AAAAAAA GGAGGCGagt 628 1.000000 8-1 483 ctagtatatg AAAGATA ccactgtcgt 489 1.000000 9-1 720 aacAAAAGAA AAAGAAA actggaaaaa 726 1.000000 10-1 8 ccattct GATAAAA ggtttaatat 14 1.000000 11-1 208 attcctattc CAATAAA gttaaactgt 214 1.000000 12-1 702 cttatctatt CAAAAAA TTTCTATTTA 708 1.000000 13-1 740 agactcgtcg AAGAAAA cacactTTTA 746 1.000000 14-1 722 acatgtaaag CAAAAAA ctagaacact 728 1.000000 15-1 326 ttaatattcc AGAAAAA gaaattcctt 332 1.000000 16-1 146 tccattctca CAAAAAA aactcagaaa 152 1.000000 17-1 600 ataattttct GAAACAA tattaaaaca 606 1.000000 18-1 207 ctatttttat CAAAAAA gtattaacat 213 1.000000 19-1 334 ttttctcaac AGAACAA taacggcaac 340 1.000000 20-1 719 aaccaaaaca AAACAAA aacaAAAACA 725 1.000000 21-1 604 cgctcaaggt CCGAAAA tgcgtctatg 610 1.000000 22-1 83 cactcctcaa CAGAAAA ccgtgctcgc 89 1.000000 23-1 434 AAAAATcaag AAAAAAA cctgattatg 440 1.000000 24-1 767 agcacactac AAAAATA cgctatcatc 773 1.000000 25-1 681 aatgtaaaca AAAAAAA ctgtctaggt 687 1.000000 26-1 551 cacaccttta AAAAAAA ccaagaacgt 557 1.000000 27-1 62 tgaaaagtca CAAAAAA cccccggGGG 68 1.000000 28-1 490 GCAcaacctt CACACAA tgcaaatttc 496 1.000000 29-1 774 ctcgtataag CAAGAAA taaagatacg 780 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 543 549 546 -w 1.000000 >2 356 362 359 -w 1.000000 >3 596 602 599 -w 1.000000 >4 706 712 709 -w 1.000000 >5 766 772 769 -w 1.000000 >6 780 786 783 -w 1.000000 >7 622 628 625 -w 1.000000 >8 483 489 486 -w 1.000000 >9 720 726 723 -w 1.000000 >10 8 14 11 -w 1.000000 >11 208 214 211 -w 1.000000 >12 702 708 705 -w 1.000000 >13 740 746 743 -w 1.000000 >14 722 728 725 -w 1.000000 >15 326 332 329 -w 1.000000 >16 146 152 149 -w 1.000000 >17 600 606 603 -w 1.000000 >18 207 213 210 -w 1.000000 >19 334 340 337 -w 1.000000 >20 719 725 722 -w 1.000000 >21 604 610 607 -w 1.000000 >22 83 89 86 -w 1.000000 >23 434 440 437 -w 1.000000 >24 767 773 770 -w 1.000000 >25 681 687 684 -w 1.000000 >26 551 557 554 -w 1.000000 >27 62 68 65 -w 1.000000 >28 490 496 493 -w 1.000000 >29 774 780 777 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 50 39 . . 0.5 2 78 . . . 0.8 3 78 . . . 0.7 4 78 . . . 0.7 5 81 . . . 0.9 6 87 . . . 1.0 7 94 . . . 1.3 non- site 31 . . . site 82 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 3 4 . . 5 2 10 . . . 8 3 10 . . . 7 4 10 . . . 7 5 11 . . . 9 6 13 . . . 10 7 15 . . . 13 site 12 . . . 9 Weighted motif model: POS A C G T Prob 1 0.498511 0.393762 0.079616 0.028111 0.547830 2 0.780643 0.048934 0.142312 0.028111 0.786360 3 0.780643 0.048934 0.110964 0.059459 0.714479 4 0.780643 0.048934 0.110964 0.059459 0.714479 5 0.811991 0.142978 0.016920 0.028111 0.905318 6 0.874687 0.017586 0.016920 0.090807 1.024164 7 0.937382 0.017586 0.016920 0.028111 1.274533 Conservedness in bits: 5.967163 Conservedness in prob: 9.470985 Concensus sequence: CAAAAAA Complete log-likelihood ratio = 225 bits Missing position information = 170 bits Log-likelihood ratio statistic = 55 bits Degrees of freedom = 21 Information per parameter = 2.62 bits MOTIF B 1-1 527 attttcacct AAACGAAA atcccgtgAA 534 1.000000 2-1 586 gaattgccgt ACAAAAAA tcgatctagc 593 1.000000 3-1 369 gacaccgttc AAACACAA gtggcagctt 376 1.000000 4-1 36 cttccgtttc AAAAATGA atataatcgt 43 1.000000 5-1 793 aaaaaaaaaa AAAAAAAA 800 1.000000 6-1 216 gcccgagaaa AAAGCAGC gactgcacta 223 1.000000 7-1 141 gcagaaacaa AAAAAAAA aaagtaaaaa 148 1.000000 8-1 510 agctcgtatc AAAATAAA actagtcagt 517 1.000000 9-1 48 gagaaaaaat AAAAACAA cggcaccaga 55 1.000000 10-1 363 ggccagctat AGAATAAA attagcccag 370 1.000000 11-1 616 tggaaaaata AAAATAAA aagtggtctc 623 1.000000 12-1 314 ttacaggatg AAAAAAAA aagacattgc 321 1.000000 13-1 486 aaaacagcct AAAAAAGA ttgaacaact 493 1.000000 14-1 333 tgataactca AAAAACAA gagtacaata 340 1.000000 15-1 223 aacctacacg AGAAAAGA aacatgattg 230 1.000000 16-1 127 tttgaagcaa AAAGGAAA atccattctc 134 1.000000 17-1 629 gtaatgactt AAAACAAG cgactatcgc 636 1.000000 18-1 571 cgtctatatt AAAAAAAA ggcagcatAA 578 1.000000 19-1 518 ggaccctttc AAAACAGA gttgtatctc 525 1.000000 20-1 730 AACAAAaaca AAAACAAA aacaggctaa 737 1.000000 21-1 779 tttccgcgta AAAAGGGA AAAAAAGCAg 786 1.000000 22-1 139 ttaggaacat AAAAATAA atatctcgcg 146 1.000000 23-1 422 aatttatgat AAAAAAAT caagAAAAAA 429 1.000000 24-1 21 ctccagagaa AAAGCCAA aggaaaatcc 28 1.000000 25-1 170 tgatgaccca AAAAGAGA tgaaagtaag 177 1.000000 26-1 602 tgtccagcat AAAAGAAA gcgagactac 609 1.000000 27-1 763 aagagtcact AAATTAAT actgggaagc 770 1.000000 28-1 27 tctgcccggt AAAATGAC gtccAAAACT 34 1.000000 29-1 242 accggccaaa AAAAAAAA aaaaaaaaaa 249 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 527 534 530 -w 1.000000 >2 586 593 589 -w 1.000000 >3 369 376 372 -w 1.000000 >4 36 43 39 -w 1.000000 >5 793 800 796 -w 1.000000 >6 216 223 219 -w 1.000000 >7 141 148 144 -w 1.000000 >8 510 517 513 -w 1.000000 >9 48 55 51 -w 1.000000 >10 363 370 366 -w 1.000000 >11 616 623 619 -w 1.000000 >12 314 321 317 -w 1.000000 >13 486 493 489 -w 1.000000 >14 333 340 336 -w 1.000000 >15 223 230 226 -w 1.000000 >16 127 134 130 -w 1.000000 >17 629 636 632 -w 1.000000 >18 571 578 574 -w 1.000000 >19 518 525 521 -w 1.000000 >20 730 737 733 -w 1.000000 >21 779 786 782 -w 1.000000 >22 139 146 142 -w 1.000000 >23 422 429 425 -w 1.000000 >24 21 28 24 -w 1.000000 >25 170 177 173 -w 1.000000 >26 602 609 605 -w 1.000000 >27 763 770 766 -w 1.000000 >28 27 34 30 -w 1.000000 >29 242 249 245 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 94 . . . 1.3 2 84 . . . 0.9 3 94 . . . 1.3 4 75 . . . 0.6 6 69 . . . 0.5 7 72 . 24 . 0.8 8 78 . . . 0.7 non- site 31 . . . site 85 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 15 . . . 13 2 12 . . . 9 3 15 . . . 13 4 9 . . . 6 6 8 . . . 5 7 9 . 1 . 8 8 10 . . . 7 site 13 . . . 10 Weighted motif model: POS A C G T Prob 1 0.937382 0.017586 0.016920 0.028111 1.274533 2 0.843339 0.048934 0.079616 0.028111 0.921096 3 0.937382 0.017586 0.016920 0.028111 1.274533 4 0.749295 0.080282 0.110964 0.059459 0.623759 6 0.686599 0.142978 0.079616 0.090807 0.463391 7 0.717947 0.017586 0.236356 0.028111 0.789235 8 0.780643 0.080282 0.048268 0.090807 0.679376 Conservedness in bits: 6.025923 Conservedness in prob: 9.561809 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 227 bits Missing position information = 169 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.79 bits MOTIF C 1-1 459 gaaacagtat TGAAACA gtattgaaac 465 1.000000 2-1 748 taaatttaga AACAGCA agcctcatca 754 1.000000 3-1 395 ttttctcgag AACAGCA atgcccacag 401 1.000000 4-1 397 ctatttcctc TGCAGCA acaagtttcc 403 1.000000 5-1 269 ctctatcttg TACAACA gaacaagaca 275 1.000000 6-1 659 acaattgcag AAAAGCA acatactaat 665 1.000000 7-1 593 agcatgatgc AACAGCT caaaagacct 599 1.000000 8-1 264 tagtaagcca TGCAGCA atgtaaaGAG 270 1.000000 9-1 713 atataggaac AAAAGAA AAAGAAAact 719 1.000000 10-1 59 gtgttcttct TGCAGCA catcagctgc 65 1.000000 11-1 455 cagccataag AGGAGGC tggatatgaa 461 1.000000 12-1 525 attttcaaca TGCAGCC atttcaccga 531 1.000000 13-1 430 aaattgtttt AAAAGAA acgaatttgc 436 1.000000 14-1 584 tttcattcgg TGCAGCA ttttaattca 590 1.000000 15-1 757 acctaacact AACAAAA ggaatacctg 763 1.000000 16-1 232 gcttctgaaa AAGAGAA aagtgagtgc 238 1.000000 17-1 417 gtagctgtct AACAGCA ccacttagca 423 1.000000 18-1 587 AAggcagcat AAGAGCA actcactgca 593 1.000000 19-1 91 caacagggtc AGCAGCA gcaacaaggc 97 1.000000 20-1 777 ctcatacgta TACAACA catacacaca 783 1.000000 21-1 195 acgaagctgc AACAGCC gttcgtacag 201 1.000000 22-1 653 cacacttgca AAAAGCA tataaaaagc 659 1.000000 23-1 764 tgtgtagatt AGCAGCA gacactcctt 770 1.000000 24-1 48 cttgggccac AGCAGAA tatgattacg 54 1.000000 25-1 379 ttagggcagt ACCAGCA aacgctgcag 385 1.000000 26-1 1 AGCAACC agctgtcaaa 7 1.000000 27-1 484 gacggggccc AGCAGTC tttttttaga 490 1.000000 28-1 724 gacgaatgtg ACCAACA taagtcctta 730 1.000000 29-1 520 ggttctttgc AACAGCA ctgaaaatag 526 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 459 465 462 -w 1.000000 >2 748 754 751 -w 1.000000 >3 395 401 398 -w 1.000000 >4 397 403 400 -w 1.000000 >5 269 275 272 -w 1.000000 >6 659 665 662 -w 1.000000 >7 593 599 596 -w 1.000000 >8 264 270 267 -w 1.000000 >9 713 719 716 -w 1.000000 >10 59 65 62 -w 1.000000 >11 455 461 458 -w 1.000000 >12 525 531 528 -w 1.000000 >13 430 436 433 -w 1.000000 >14 584 590 587 -w 1.000000 >15 757 763 760 -w 1.000000 >16 232 238 235 -w 1.000000 >17 417 423 420 -w 1.000000 >18 587 593 590 -w 1.000000 >19 91 97 94 -w 1.000000 >20 777 783 780 -w 1.000000 >21 195 201 198 -w 1.000000 >22 653 659 656 -w 1.000000 >23 764 770 767 -w 1.000000 >24 48 54 51 -w 1.000000 >25 379 385 382 -w 1.000000 >26 1 7 4 -w 1.000000 >27 484 490 487 -w 1.000000 >28 724 730 727 -w 1.000000 >29 520 526 523 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 69 . . . 0.6 2 50 . 39 . 0.6 3 . 68 . . 0.9 4 94 . . . 1.3 5 . . 74 . 1.2 6 . 71 . . 0.9 7 75 . . . 0.7 non- site 31 19 . . site 51 24 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 8 . . . 6 2 3 . 4 . 6 3 . 12 . . 9 4 15 . . . 13 5 . . 15 . 12 6 . 13 . . 9 7 9 . . . 7 site 4 1 . . 3 Weighted motif model: POS A C G T Prob 1 0.686599 0.017586 0.016920 0.278895 0.622908 2 0.498511 0.080282 0.393096 0.028111 0.563762 3 0.185031 0.675893 0.110964 0.028111 0.901047 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.216379 0.017586 0.737923 0.028111 1.194887 6 0.185031 0.707241 0.048268 0.059459 0.948512 7 0.749295 0.174326 0.016920 0.059459 0.723705 Conservedness in bits: 6.229355 Conservedness in prob: 10.740993 Concensus sequence: AGCAGCA Complete log-likelihood ratio = 233 bits Missing position information = 177 bits Log-likelihood ratio statistic = 55 bits Degrees of freedom = 21 Information per parameter = 2.66 bits MOTIF D 1-1 217 attgctagca GCAAAACCAAA gtatacttat 227 1.000000 2-1 668 gcctacaatg ATATAAAAGGC tttgtcttga 678 1.000000 3-1 774 gcaaaaatag GTAACTAACAA ctcaattgaa 784 1.000000 4-1 661 ATTTTTTTaa GCAACATCAGC tgcactagtt 671 1.000000 5-1 164 ccaaatgttg ACAGCAATGGC tcaaggttat 174 1.000000 6-1 255 agaaggctta AAACATCACGC gatccatata 265 1.000000 7-1 502 cctctagttt AGTGCAGTCGC tgCTTTTTTC 512 1.000000 8-1 164 CTCTGTgata ACGGTTGTGAG ggggcctCTG 174 1.000000 9-1 615 ctttcaacaa GTTTATTGGGC ccgacttacc 625 1.000000 10-1 438 taacacgaaa AATGCTGGTGC aggtggattt 448 1.000000 11-1 643 cagaattgtt TCAAAAGTGGC actgacacaa 653 1.000000 12-1 709 attCAAAAAA TTTCTATTTAC ttttatattt 719 1.000000 13-1 753 AAAAcacact TTTATAGCGGA accgctttct 763 1.000000 14-1 11 gcagaagtat CACTAACAGAG tgcggtatct 21 1.000000 15-1 637 gtaaaactcc AGTAAAACGAG acctgttgat 647 1.000000 16-1 308 aaacatgatt AATCAATCTGT tcgctTTAAG 318 1.000000 17-1 113 agtgatttta ACTCAAGTCGG ttcaggccca 123 1.000000 18-1 366 acactatgat GGCTCATATGA tagatacata 376 1.000000 19-1 200 gccagcaaca GGCTAATGAGT atggtagacc 210 1.000000 20-1 273 acgctgatac GGATACTTGGA ggcacacgca 283 1.000000 21-1 671 agcggtttta ATTGAATCGGC ttagcctgtt 681 1.000000 22-1 384 ttcggtaata GTTTAATTTTC caaaaaggtt 394 1.000000 23-1 700 caggacatct GTATAAGAGGC taagacAATT 710 1.000000 24-1 692 ataaagctga ATTAAATTCAG tacaatggaa 702 1.000000 25-1 62 attgtggcaa GGGCAATCGGG cacttttatt 72 1.000000 26-1 482 gctgaagcgt TTAAAATAGAG aatcaggatg 492 1.000000 27-1 287 tgcttcgcct ACCGCAATGAC gttcgatatg 297 1.000000 28-1 103 cccagatagt AGCGCAATGGC ttgataccgt 113 1.000000 29-1 64 ggaagacgaa TTCAAAATGGA tggcatcggg 74 1.000000 sites: * *** *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 217 227 222 -w 1.000000 >2 668 678 673 -w 1.000000 >3 774 784 779 -w 1.000000 >4 661 671 666 -w 1.000000 >5 164 174 169 -w 1.000000 >6 255 265 260 -w 1.000000 >7 502 512 507 -w 1.000000 >8 164 174 169 -w 1.000000 >9 615 625 620 -w 1.000000 >10 438 448 443 -w 1.000000 >11 643 653 648 -w 1.000000 >12 709 719 714 -w 1.000000 >13 753 763 758 -w 1.000000 >14 11 21 16 -w 1.000000 >15 637 647 642 -w 1.000000 >16 308 318 313 -w 1.000000 >17 113 123 118 -w 1.000000 >18 366 376 371 -w 1.000000 >19 200 210 205 -w 1.000000 >20 273 283 278 -w 1.000000 >21 671 681 676 -w 1.000000 >22 384 394 389 -w 1.000000 >23 700 710 705 -w 1.000000 >24 692 702 697 -w 1.000000 >25 62 72 67 -w 1.000000 >26 482 492 487 -w 1.000000 >27 287 297 292 -w 1.000000 >28 103 113 108 -w 1.000000 >29 64 74 69 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 . 33 . 0.3 4 . . 24 . 0.0 5 59 27 . . 0.5 6 75 . . . 0.7 9 . . 52 . 0.4 10 . . 61 . 0.8 11 . 46 24 . 0.4 non- site 31 . 18 . site 39 . 29 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 . 3 . 3 4 . . 1 . 0 5 6 1 . . 5 6 9 . . . 7 9 . . 8 . 4 10 . . 11 . 8 11 . 6 1 . 4 site 1 . 2 . 1 Weighted motif model: POS A C G T Prob 1 0.435815 0.048934 0.330400 0.184851 0.251048 4 0.310423 0.174326 0.236356 0.278895 0.012635 5 0.592555 0.268370 0.016920 0.122155 0.455058 6 0.749295 0.048934 0.016920 0.184851 0.657065 9 0.122335 0.174326 0.518487 0.184851 0.438182 10 0.310423 0.017586 0.612531 0.059459 0.849261 11 0.216379 0.456458 0.236356 0.090807 0.372838 Conservedness in bits: 3.036087 Conservedness in prob: 7.804579 Concensus sequence: GGAAGGC Complete log-likelihood ratio = 111 bits Missing position information = 87 bits Log-likelihood ratio statistic = 23 bits Degrees of freedom = 21 Information per parameter = 1.11 bits MOTIF E 1-1 672 gagcatcaag TGAGGCT tgagtttacg 678 1.000000 2-1 325 taattgctcg TGTTGGA ttgagcgaaa 331 1.000000 3-1 108 gcatttatac TTTGGGT agttcagcta 114 1.000000 4-1 64 acgtttacct TGTGGCA gcactagcta 70 1.000000 5-1 612 ttaaaaaaaa TATGGCT aagtagcaat 618 1.000000 6-1 138 tcttttgagc TGTTGCA tcatgctgtt 144 1.000000 7-1 66 tatattagta TGTTGCT tttctgcaat 72 1.000000 8-1 121 caactcatct TGTTGCT gttctacgtg 127 1.000000 9-1 482 acttttcctt TTTCGCT gcctcttttt 488 1.000000 10-1 736 aagtaagacc CGGTGCT aaacaacctg 742 1.000000 11-1 416 TTTATTTTtg TGTTGCA agcgttgatc 422 1.000000 12-1 143 gtttggggct TGTTGGT ATGTTGCATt 149 1.000000 13-1 315 aactctagag TGTTGCA taatttgaaa 321 1.000000 14-1 360 atgaaaatct TTTGCCT tcattgtcat 366 1.000000 15-1 367 tattgctact TTGGGCA ggcgcgaccg 373 1.000000 16-1 14 ttgaacgtga TTTTGGA actggaaatt 20 1.000000 17-1 355 atgcctactc TTTTGCT ttttcatatc 361 1.000000 18-1 611 gcaaagggaa TTGCGCA ttccacgcaa 617 1.000000 19-1 713 gtaaggtatg TGTTGCT cttaaaatat 719 1.000000 20-1 64 ggggcgtgca TGTGACT gttcattatt 70 1.000000 21-1 221 gtgcgacctc TGCGGCA tcgttacccg 227 1.000000 22-1 254 ttctttatac TGCTAGT tcattctgag 260 1.000000 23-1 385 gtattttttt TTTCACT tctacttaaa 391 1.000000 24-1 66 atgattacga TGCTGCA gaagataacg 72 1.000000 25-1 317 gaagaagata TTTGGCA aatttggact 323 1.000000 26-1 389 gcctaacgcg TTCCGCA attaagtTTG 395 1.000000 27-1 587 gtataatatt TGTTACA aattattgaT 593 1.000000 28-1 687 ataactggcc TGTTGCT ggcaagaggt 693 1.000000 29-1 550 caaacaactt TGCGCCA gttcccgcct 556 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 672 678 675 -w 1.000000 >2 325 331 328 -w 1.000000 >3 108 114 111 -w 1.000000 >4 64 70 67 -w 1.000000 >5 612 618 615 -w 1.000000 >6 138 144 141 -w 1.000000 >7 66 72 69 -w 1.000000 >8 121 127 124 -w 1.000000 >9 482 488 485 -w 1.000000 >10 736 742 739 -w 1.000000 >11 416 422 419 -w 1.000000 >12 143 149 146 -w 1.000000 >13 315 321 318 -w 1.000000 >14 360 366 363 -w 1.000000 >15 367 373 370 -w 1.000000 >16 14 20 17 -w 1.000000 >17 355 361 358 -w 1.000000 >18 611 617 614 -w 1.000000 >19 713 719 716 -w 1.000000 >20 64 70 67 -w 1.000000 >21 221 227 224 -w 1.000000 >22 254 260 257 -w 1.000000 >23 385 391 388 -w 1.000000 >24 66 72 69 -w 1.000000 >25 317 323 320 -w 1.000000 >26 389 395 392 -w 1.000000 >27 587 593 590 -w 1.000000 >28 687 693 690 -w 1.000000 >29 550 556 553 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 91 1.2 2 . . 58 . 0.8 3 . . . 66 0.5 4 . . 33 50 0.5 5 . . 74 . 1.1 6 . 77 . . 1.3 7 47 . . 50 0.5 non- site . . 18 30 site . . 29 43 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 14 12 2 . . 10 . 8 3 . . . 7 5 4 . . 3 3 5 5 . . 15 . 11 6 . 15 . . 13 7 3 . . 3 5 site . . 2 2 2 Weighted motif model: POS A C G T Prob 1 0.028292 0.048934 0.016920 0.905854 1.151197 2 0.059639 0.017586 0.581183 0.341591 0.800809 3 0.059639 0.174326 0.110964 0.655071 0.458315 4 0.028292 0.142978 0.330400 0.498331 0.456405 5 0.153683 0.080282 0.737923 0.028111 1.110878 6 0.028292 0.769937 0.173660 0.028111 1.321843 7 0.467163 0.017586 0.016920 0.498331 0.497486 Conservedness in bits: 5.796932 Conservedness in prob: 9.772828 Concensus sequence: TGTGGCT Complete log-likelihood ratio = 218 bits Missing position information = 160 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.77 bits MOTIF F 1-1 252 ccatatttga GAGAGCC tgtcacccaa 258 1.000000 2-1 52 GTTTGattat GAAAGCA acccggaagg 58 1.000000 3-1 61 actaagtggt GGAAGCG cggaatctcg 67 1.000000 4-1 301 cacgcgattg AAACGCG ctaattgcat 307 1.000000 5-1 109 agatcgacac GGACGCA aacgttccaa 115 1.000000 6-1 384 tgttcattca AGGGGCG gtagtgcttg 390 1.000000 7-1 629 cacAAAAAAA GGAGGCG agtaggtggt 635 1.000000 8-1 278 GCAatgtaaa GAGTGCG gttgattcgt 284 1.000000 9-1 185 taaagaggtg GAAGGCA agagtcttga 191 1.000000 10-1 536 gtgcaaattg GGAAGAG atctattgtt 542 1.000000 11-1 103 agcttccgtt AAACCCG atgactatct 109 1.000000 12-1 346 gcatcactgt AGGAGCG actataaaac 352 1.000000 13-1 14 tccgttaatc AAGAGCA gGTCTTGAAC 20 1.000000 14-1 520 tcttgattat AGAGGCG acagcttatc 526 1.000000 15-1 294 ttggcgttca GCAAGCG cgcggctccg 300 1.000000 16-1 488 gccggattct AAGAGCG cgcgcgaggc 494 1.000000 17-1 274 gtattggtcg GAACGAC caagcttcaa 280 1.000000 18-1 469 gcttaagaat ACGGGCG ctgtaggtta 475 1.000000 19-1 259 gagtacggaa GACCGCA atacggcgga 265 1.000000 20-1 760 cgattcaatt AAAACCG ctcatacgta 766 1.000000 21-1 530 gcagctgttg GCGCGCG tggttttgct 536 1.000000 22-1 539 tcgttgcaag GAACGCG cgcgcacaga 545 1.000000 23-1 54 taagtggtgg AAGCGCG gaatctcgga 60 1.000000 24-1 300 agatactttc ACGAGCC ttccctttca 306 1.000000 25-1 647 ggatttaact AAATGCA aaaaaaaaaa 653 1.000000 26-1 159 ttcagctaag GGACGCG gagtttcatc 165 1.000000 27-1 76 AAAcccccgg GGGAGCG catactttaa 82 1.000000 28-1 476 aaaacccttt ATATGCA caaccttCAC 482 1.000000 29-1 40 gctcacttcc AATGGCA caagagagga 46 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 252 258 255 -w 1.000000 >2 52 58 55 -w 1.000000 >3 61 67 64 -w 1.000000 >4 301 307 304 -w 1.000000 >5 109 115 112 -w 1.000000 >6 384 390 387 -w 1.000000 >7 629 635 632 -w 1.000000 >8 278 284 281 -w 1.000000 >9 185 191 188 -w 1.000000 >10 536 542 539 -w 1.000000 >11 103 109 106 -w 1.000000 >12 346 352 349 -w 1.000000 >13 14 20 17 -w 1.000000 >14 520 526 523 -w 1.000000 >15 294 300 297 -w 1.000000 >16 488 494 491 -w 1.000000 >17 274 280 277 -w 1.000000 >18 469 475 472 -w 1.000000 >19 259 265 262 -w 1.000000 >20 760 766 763 -w 1.000000 >21 530 536 533 -w 1.000000 >22 539 545 542 -w 1.000000 >23 54 60 57 -w 1.000000 >24 300 306 303 -w 1.000000 >25 647 653 650 -w 1.000000 >26 159 165 162 -w 1.000000 >27 76 82 79 -w 1.000000 >28 476 482 479 -w 1.000000 >29 40 46 43 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 47 . 49 . 0.8 2 50 . 30 . 0.3 3 53 . 36 . 0.5 4 37 30 . . 0.2 5 . . 86 . 1.6 6 . 86 . . 1.5 7 . . 58 . 0.7 non- site . 19 18 . site . 22 42 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 3 . 7 . 8 2 3 . 2 . 3 3 4 . 3 . 5 4 1 2 . . 2 5 . . 19 . 16 6 . 19 . . 15 7 . . 10 . 7 site . 1 5 . 5 Weighted motif model: POS A C G T Prob 1 0.467163 0.017586 0.487139 0.028111 0.791891 2 0.498511 0.142978 0.299052 0.059459 0.339667 3 0.529859 0.048934 0.361748 0.059459 0.515142 4 0.373119 0.299718 0.205008 0.122155 0.151894 5 0.028292 0.080282 0.863315 0.028111 1.614093 6 0.090987 0.863981 0.016920 0.028111 1.548173 7 0.279075 0.111630 0.581183 0.028111 0.725069 Conservedness in bits: 5.685929 Conservedness in prob: 9.678111 Concensus sequence: GGGCGCG Complete log-likelihood ratio = 212 bits Missing position information = 164 bits Log-likelihood ratio statistic = 47 bits Degrees of freedom = 21 Information per parameter = 2.26 bits MOTIF G 1-1 509 tgctctgtcg TTCATTTT attttcacct 516 1.000000 2-1 215 gcaaccacca TTTTTTTT tgctccaaag 222 1.000000 3-1 332 ctacagggct TTCTTTTT aaaacaggat 339 1.000000 4-1 140 tctcaagaat TGCATTTT gtaataacaa 147 1.000000 5-1 714 gtctgttaaa TGTTTTTT atctcaggtt 721 1.000000 6-1 423 gcggatactt TTTAGTTT gggaagagtt 430 1.000000 7-1 707 tcaactaccg TACTCTTT ttcctttttt 714 1.000000 8-1 755 tattttaata TTTGTTTT ggcatttgaa 762 1.000000 9-1 508 tcccatgcat TTCCTTTT tgagtagtac 515 1.000000 10-1 175 acaacagaat TTCGTTTT gtagtatagt 182 1.000000 11-1 406 ttttttttaa TTTATTTT tgTGTTGCAa 413 1.000000 12-1 279 atggatgatt TGCCTTTT tgaagttatt 286 1.000000 13-1 577 taccactacg TTCCTTTT acaattagat 584 1.000000 14-1 161 tgtgggctta TACTTTTT tctttactac 168 1.000000 15-1 708 agagagcttc TTTTTTTA tgctatcgaa 715 1.000000 16-1 391 cctacaggcg TGATTTTC tgtctaaaca 398 1.000000 17-1 226 TTCTTTtctt TTCCTTTT tttacaatag 233 1.000000 18-1 778 ggttcaacaa CTGTTTCT attcaaaaac 785 1.000000 19-1 745 tacgacatcc TTTATCTT ttttccttta 752 1.000000 20-1 634 tacatatatc TGCTTTTT ttcccttttt 641 1.000000 21-1 414 ttgggccgca TGTATTTG ttgctgcaga 421 1.000000 22-1 366 ccctgtgttg TGGCTTTT ttcggtaata 373 1.000000 23-1 170 ttgtttcata TGTGTTTT atgaacgttc 177 1.000000 24-1 728 cacgtctttc TGTATTTT cataccttta 735 1.000000 25-1 544 gttagtattt TGTGTTTT ttacaacaac 551 1.000000 26-1 744 caagctccgg TGTGTATG cattgatatt 751 1.000000 27-1 622 atatctcggg TTCATTTT ttacgtcggt 629 1.000000 28-1 562 ttcacgggat TTTCGTTT aggtgaaaat 569 1.000000 29-1 615 cttttcgtgg TCCTTTTT cctaatttgc 622 1.000000 sites: *** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 509 516 512 -w 1.000000 >2 215 222 218 -w 1.000000 >3 332 339 335 -w 1.000000 >4 140 147 143 -w 1.000000 >5 714 721 717 -w 1.000000 >6 423 430 426 -w 1.000000 >7 707 714 710 -w 1.000000 >8 755 762 758 -w 1.000000 >9 508 515 511 -w 1.000000 >10 175 182 178 -w 1.000000 >11 406 413 409 -w 1.000000 >12 279 286 282 -w 1.000000 >13 577 584 580 -w 1.000000 >14 161 168 164 -w 1.000000 >15 708 715 711 -w 1.000000 >16 391 398 394 -w 1.000000 >17 226 233 229 -w 1.000000 >18 778 785 781 -w 1.000000 >19 745 752 748 -w 1.000000 >20 634 641 637 -w 1.000000 >21 414 421 417 -w 1.000000 >22 366 373 369 -w 1.000000 >23 170 177 173 -w 1.000000 >24 728 735 731 -w 1.000000 >25 544 551 547 -w 1.000000 >26 744 751 747 -w 1.000000 >27 622 629 625 -w 1.000000 >28 562 569 565 -w 1.000000 >29 615 622 618 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 91 1.2 2 . . 36 50 0.4 3 . 43 . 44 0.5 5 . . . 84 0.9 6 . . . 87 1.0 7 . . . 91 1.2 8 . . . 81 0.8 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 14 12 2 . . 3 3 4 3 . 5 . 2 5 5 . . . 12 9 6 . . . 13 10 7 . . . 14 12 8 . . . 11 8 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.028292 0.048934 0.016920 0.905854 1.151197 2 0.090987 0.048934 0.361748 0.498331 0.431438 3 0.059639 0.425110 0.079616 0.435635 0.458592 5 0.028292 0.048934 0.079616 0.843158 0.927728 6 0.059639 0.048934 0.016920 0.874506 1.013874 7 0.028292 0.048934 0.016920 0.905854 1.151197 8 0.059639 0.048934 0.079616 0.811810 0.793709 Conservedness in bits: 5.927734 Conservedness in prob: 9.535341 Concensus sequence: TGCTTTT Complete log-likelihood ratio = 221 bits Missing position information = 181 bits Log-likelihood ratio statistic = 39 bits Degrees of freedom = 21 Information per parameter = 1.9 bits MOTIF H 1-1 689 tgagtttacg TTTGTTTTT aataatcagt 697 1.000000 2-1 38 gagtcctaaa CTTTGTTTG attatGAAAG 46 1.000000 3-1 446 gacgtggaga TTTTTTTAT cccgcatatg 454 1.000000 4-1 650 atttggtttt TATTTTTTT aaGCAACATC 658 1.000000 5-1 526 atttttaaaa CTTTTTTTT tttgaaagtc 534 1.000000 6-1 591 actttttttt TTTTTGTTT ctgcattctc 599 1.000000 7-1 515 GCAGTCGCtg CTTTTTTCT cgggctgagt 523 1.000000 8-1 151 cagtgtagta TTTCTCTGT gataACGGTT 159 1.000000 9-1 528 agtagtacgt CTTATTTTT gattatatgc 536 1.000000 10-1 675 gtgttttttt CTTTAGTCT tataagttct 683 1.000000 11-1 37 attacttctt CTTTGTTTT atgtgttgtt 45 1.000000 12-1 403 taaggaaaaa TATCTGTTT actttcattt 411 1.000000 13-1 287 atgaagtttt CGTGTGTAT aaatatatga 295 1.000000 14-1 45 tattcaagat CTTTGATGT gtcatcaata 53 1.000000 15-1 344 aaattccttc TTTGGGTGT tgtgtattgc 352 1.000000 16-1 450 ggccatttga TTTATACTT gtttcagatc 458 1.000000 17-1 213 taacattttt CTTTTCTTT tcttTTCCTT 221 1.000000 18-1 718 ctgaacaaat TTTCTATAT ataaacactg 726 1.000000 19-1 427 ataactttat TTTTTTTTA ttaattgggc 435 1.000000 20-1 466 tctttacggt GTTTGGAGA cgtattttaa 474 1.000000 21-1 636 cattcttgta TGTGTGTAT gtgttgtata 644 1.000000 22-1 499 agcggaatat CTTTGTTTA ctcattaaaa 507 1.000000 23-1 667 tttttttttt TTTTTTAAA ggcattgtca 675 1.000000 24-1 350 cttgtccttc TTTGTTTCA agcgtttata 358 1.000000 25-1 397 acgctgcagt TTTTTACAT ctttgagact 405 1.000000 26-1 721 aagaatattt CGTTTATCA tatccaagct 729 1.000000 27-1 603 Aaattattga TTTTAATAT atatctcggg 611 1.000000 28-1 297 tgataccatc CTTTTATTC tctacaccga 305 1.000000 29-1 308 atttgtttgt TATCTGTTT ctcatcggtt 316 1.000000 sites: ***** * * 5 (29 sites in 29 sequences) Conservedness in sites: >1 689 697 693 -w 1.000000 >2 38 46 42 -w 1.000000 >3 446 454 450 -w 1.000000 >4 650 658 654 -w 1.000000 >5 526 534 530 -w 1.000000 >6 591 599 595 -w 1.000000 >7 515 523 519 -w 1.000000 >8 151 159 155 -w 1.000000 >9 528 536 532 -w 1.000000 >10 675 683 679 -w 1.000000 >11 37 45 41 -w 1.000000 >12 403 411 407 -w 1.000000 >13 287 295 291 -w 1.000000 >14 45 53 49 -w 1.000000 >15 344 352 348 -w 1.000000 >16 450 458 454 -w 1.000000 >17 213 221 217 -w 1.000000 >18 718 726 722 -w 1.000000 >19 427 435 431 -w 1.000000 >20 466 474 470 -w 1.000000 >21 636 644 640 -w 1.000000 >22 499 507 503 -w 1.000000 >23 667 675 671 -w 1.000000 >24 350 358 354 -w 1.000000 >25 397 405 401 -w 1.000000 >26 721 729 725 -w 1.000000 >27 603 611 607 -w 1.000000 >28 297 305 301 -w 1.000000 >29 308 316 312 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 39 . 53 0.6 2 . . . 75 0.6 3 . . . 94 1.3 4 . . . 59 0.3 5 . . . 69 0.6 7 . . . 81 0.8 9 . . . 69 0.5 non- site . . . 30 site . . . 75 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 4 . 4 6 2 . . . 10 6 3 . . . 15 13 4 . . . 6 3 5 . . . 8 6 7 . . . 11 8 9 . . . 8 5 site . . . 10 6 Weighted motif model: POS A C G T Prob 1 0.028292 0.393762 0.048268 0.529679 0.623175 2 0.122335 0.017586 0.110964 0.749114 0.647846 3 0.028292 0.017586 0.016920 0.937202 1.282005 4 0.090987 0.142978 0.173660 0.592375 0.314417 5 0.090987 0.017586 0.205008 0.686418 0.596004 7 0.090987 0.080282 0.016920 0.811810 0.808618 9 0.216379 0.048934 0.048268 0.686418 0.485209 Conservedness in bits: 4.757274 Conservedness in prob: 8.532833 Concensus sequence: CTTTTTT Complete log-likelihood ratio = 178 bits Missing position information = 155 bits Log-likelihood ratio statistic = 23 bits Degrees of freedom = 21 Information per parameter = 1.14 bits MOTIF I 1-1 395 atatatatac CTCTTGCCA gcaacaggcc 403 1.000000 2-1 437 ggtttgtgcc GTTCTGCAC gttttcgtat 445 1.000000 3-1 585 gacaatgcta TACTTGTAA atAGAAAAAt 593 1.000000 4-1 541 ctactaggtg ATATTGAGG cttttgtaca 549 1.000000 5-1 386 gacgttgttt TTGTAGAAC atgaaacgaa 394 1.000000 6-1 168 tagaggttat TTTTTGACC ttggtttttc 176 1.000000 7-1 725 ttcctttttt ATTTTGCCC ttagattgta 733 1.000000 8-1 182 GAGggggcct CTGCTAAGC tcgctttggc 190 1.000000 9-1 583 tttggcttcc TTTTAGCAC tttctctctc 591 1.000000 10-1 786 CGGCAgcaac TTTTTACTA caaaag 794 1.000000 11-1 245 tattggataa GTTCATATC ctaaaacgtg 253 1.000000 12-1 150 gctTGTTGGT ATGTTGCAT tcatacgatg 158 1.000000 13-1 22 tcAAGAGCAg GTCTTGAAC gttttgttcg 30 1.000000 14-1 81 tattgttgtc TTTTTGCTT gttggaatta 89 1.000000 15-1 87 ctatttctta CTCTTGCGC tgaggaacgc 95 1.000000 16-1 324 TCTGTtcgct TTAAGGAAG atctcataag 332 1.000000 17-1 57 tcatctaact TTACTGCAC gtgaattgga 65 1.000000 18-1 72 taatagaaaa TTATGGAAC aatagacctg 80 1.000000 19-1 599 gcgctgtctc ATTTTGGTG cgatgatgaa 607 1.000000 20-1 557 cgttggtccc GTTCAGTGC ttcaaactca 565 1.000000 21-1 299 gcagcagcga GTCCAGCTC gcgcgattgg 307 1.000000 22-1 439 cttagaccac GTCCTGCAC ggttttgcag 447 1.000000 23-1 301 ttcttattac TTCTTGCAC aaagatgcta 309 1.000000 24-1 457 TGAAacaaac TTATTGCAC tcctgcatcg 465 1.000000 25-1 99 agcttcggtg GTGTTGCCT ggtttgcaac 107 1.000000 26-1 403 GCAattaagt TTGTTGCGG aataaatgac 411 1.000000 27-1 119 cgctaacgtt TTTCTGAAT aatgctgtcg 127 1.000000 28-1 332 ctttactcct ATGCTGTTT acaaggtcta 340 1.000000 29-1 578 cttattcttt TTCCAGCTC tcttctactt 586 1.000000 sites: ** **** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 395 403 399 -w 1.000000 >2 437 445 441 -w 1.000000 >3 585 593 589 -w 1.000000 >4 541 549 545 -w 1.000000 >5 386 394 390 -w 1.000000 >6 168 176 172 -w 1.000000 >7 725 733 729 -w 1.000000 >8 182 190 186 -w 1.000000 >9 583 591 587 -w 1.000000 >10 786 794 790 -w 1.000000 >11 245 253 249 -w 1.000000 >12 150 158 154 -w 1.000000 >13 22 30 26 -w 1.000000 >14 81 89 85 -w 1.000000 >15 87 95 91 -w 1.000000 >16 324 332 328 -w 1.000000 >17 57 65 61 -w 1.000000 >18 72 80 76 -w 1.000000 >19 599 607 603 -w 1.000000 >20 557 565 561 -w 1.000000 >21 299 307 303 -w 1.000000 >22 439 447 443 -w 1.000000 >23 301 309 305 -w 1.000000 >24 457 465 461 -w 1.000000 >25 99 107 103 -w 1.000000 >26 403 411 407 -w 1.000000 >27 119 127 123 -w 1.000000 >28 332 340 336 -w 1.000000 >29 578 586 582 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 24 47 0.1 2 . . . 91 1.1 4 . 33 . 59 0.6 5 . . . 69 0.5 6 . . 83 . 1.4 7 . 52 . . 0.5 9 . 55 . . 0.5 non- site . 19 . 30 site . 22 . 44 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 1 3 1 2 . . . 14 11 4 . 3 . 6 6 5 . . . 8 5 6 . . 18 . 14 7 . 7 . . 5 9 . 8 . . 5 site . 1 . 2 1 Weighted motif model: POS A C G T Prob 1 0.185031 0.111630 0.236356 0.466983 0.131859 2 0.059639 0.017586 0.016920 0.905854 1.143116 4 0.059639 0.331066 0.016920 0.592375 0.611508 5 0.216379 0.017586 0.079616 0.686418 0.517854 6 0.090987 0.017586 0.831967 0.059459 1.433592 7 0.310423 0.519154 0.048268 0.122155 0.480593 9 0.122335 0.550502 0.142312 0.184851 0.473493 Conservedness in bits: 4.792015 Conservedness in prob: 9.326935 Concensus sequence: TTTTGCC Complete log-likelihood ratio = 175 bits Missing position information = 151 bits Log-likelihood ratio statistic = 24 bits Degrees of freedom = 21 Information per parameter = 1.15 bits MOTIF J 1-1 190 gatttggaga AAAACAGAA gcttcagcat 198 1.000000 2-1 644 aagcccacaa ATAACTGCA acagcgccta 652 1.000000 3-1 557 gtcatgagga ATAAGGGCA ttcagtaccg 565 1.000000 4-1 466 gcacgtgcga ATAAGGGCA gaaattaatc 474 1.000000 5-1 466 aggaaagata ATAAATACT aaacactact 474 1.000000 6-1 11 gggcaaaata AAAAAGGAA aaagagtacg 19 1.000000 7-1 101 tgccctgtaa AAAACCGCA tcatctaaaa 109 1.000000 8-1 730 ccgtgtatat ATAAGAGCT attcactatt 738 1.000000 9-1 69 caccagaacc AAAAATCAA aattaagtag 77 1.000000 10-1 772 gagcaatttc AATACGGCA gcaacTTTTT 780 1.000000 11-1 550 tttgtgttcg AAAAAGGGA agattgctcc 558 1.000000 12-1 550 gaaaatacct AAAAAGGAA ataggcaata 558 1.000000 13-1 115 cttacatctg AAAATTGCA agttacattc 123 1.000000 14-1 626 ttgtacggtt ATAACAGCA cattattgaa 634 1.000000 15-1 609 attcgcatcc GAAAAAGAA actgaaaatg 617 1.000000 16-1 601 ctataattcc ATTACGGCA aaacagaact 609 1.000000 17-1 682 taaaacgtat ATAAGCGCA gaataatgat 690 1.000000 18-1 163 tcgaaaatcc AATAACGCA aaacgggctg 171 1.000000 19-1 568 attgaatggc ATAATTGCA ctgtcacttt 576 1.000000 20-1 150 gtcgccacgg AACACCGCA ctcggtctac 158 1.000000 21-1 787 taAAAAGGGA AAAAAAGCA gatat 795 1.000000 22-1 613 ccagcggtta ATCTACGCA gttgcgtatt 621 1.000000 23-1 717 AGGCtaagac AATTACGCA cacaacgctt 725 1.000000 24-1 442 aacataaaac AACACTGAA acaaacTTAT 450 1.000000 25-1 17 gttgcctaca ATAAAAGCA attataactg 25 1.000000 26-1 623 agactacaat AATACAGCA aggatggggt 631 1.000000 27-1 463 ttacctctga AACAAAGCC gagacggggc 471 1.000000 28-1 39 AATGACgtcc AAAACTGCC agtattccat 47 1.000000 29-1 183 cagcttttac ATAATGGCA ccagtaataa 191 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 190 198 194 -w 1.000000 >2 644 652 648 -w 1.000000 >3 557 565 561 -w 1.000000 >4 466 474 470 -w 1.000000 >5 466 474 470 -w 1.000000 >6 11 19 15 -w 1.000000 >7 101 109 105 -w 1.000000 >8 730 738 734 -w 1.000000 >9 69 77 73 -w 1.000000 >10 772 780 776 -w 1.000000 >11 550 558 554 -w 1.000000 >12 550 558 554 -w 1.000000 >13 115 123 119 -w 1.000000 >14 626 634 630 -w 1.000000 >15 609 617 613 -w 1.000000 >16 601 609 605 -w 1.000000 >17 682 690 686 -w 1.000000 >18 163 171 167 -w 1.000000 >19 568 576 572 -w 1.000000 >20 150 158 154 -w 1.000000 >21 787 795 791 -w 1.000000 >22 613 621 617 -w 1.000000 >23 717 725 721 -w 1.000000 >24 442 450 446 -w 1.000000 >25 17 25 21 -w 1.000000 >26 623 631 627 -w 1.000000 >27 463 471 467 -w 1.000000 >28 39 47 43 -w 1.000000 >29 183 191 187 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 2 56 . . 40 0.5 3 66 . . . 0.4 4 87 . . . 1.0 7 . . 86 . 1.6 8 . 71 . . 1.0 9 81 . . . 0.8 non- site 31 . . . site 61 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 2 5 . . 2 5 3 7 . . . 4 4 13 . . . 10 7 . . 19 . 16 8 . 13 . . 10 9 11 . . . 8 site 6 . . . 3 Weighted motif model: POS A C G T Prob 1 0.906034 0.017586 0.048268 0.028111 1.144756 2 0.561207 0.017586 0.016920 0.404287 0.514372 3 0.655251 0.142978 0.016920 0.184851 0.445746 4 0.874687 0.017586 0.016920 0.090807 1.024164 7 0.059639 0.048934 0.863315 0.028111 1.574636 8 0.216379 0.707241 0.048268 0.028111 1.018040 9 0.811991 0.080282 0.016920 0.090807 0.802539 Conservedness in bits: 6.524253 Conservedness in prob: 10.424908 Concensus sequence: AAAAGCA Complete log-likelihood ratio = 243 bits Missing position information = 178 bits Log-likelihood ratio statistic = 65 bits Degrees of freedom = 21 Information per parameter = 3.11 bits seed 5 time: 22 seconds (0.37 minutes) MOTIF A 1-1 203 acagaagctt CAGCATT gctagcagca 209 1.000000 2-1 484 ttgttattca CGGCAAC cattgcgttt 490 1.000000 3-1 275 ttggcgcaat CGGTAGC gcgtatgact 281 1.000000 4-1 399 atttcctctg CAGCAAC aagtttcctt 405 1.000000 5-1 147 Gaatatactt TGGCTAA ccaaatgttg 153 1.000000 6-1 201 ttttcgccgt ACTCAGC ccgagaaaaa 207 1.000000 7-1 592 cagcatgatg CAACAGC tcaaaagacc 598 1.000000 8-1 266 gtaagccatg CAGCAAT gtaaagagtg 272 1.000000 9-1 324 tggaaaagct CTCCAAC gaccttgaaa 330 1.000000 10-1 779 ttcaatacgg CAGCAAC tttttactac 785 1.000000 11-1 330 tggtctaagg CGGCAGA cttaagatct 336 1.000000 12-1 230 gactacatga CTGTAAC taaaattcaa 236 1.000000 13-1 443 agaaacgaat TTGCAAC atcttaagat 449 1.000000 14-1 719 ataacatgta AAGCAAA aaactagaac 725 1.000000 15-1 601 tagtgatcat TCGCATC cgaaaaagaa 607 1.000000 16-1 169 gaaatacacg CACCAGT cAAAAAAGac 175 1.000000 17-1 468 ttaaagatct CAGCAGC cacccaatct 474 1.000000 18-1 668 aactgtgtca CACTAGC gggttgtttt 674 1.000000 19-1 344 agaacaataa CGGCAAC cagaaccgct 350 1.000000 20-1 436 gccaatttat CAGCAAT tgctctgagt 442 1.000000 21-1 217 tacagtgcga CCTCTGC ggcatcgtta 223 1.000000 22-1 604 taagctagcc CAGCGGT taatctacGC 610 1.000000 23-1 763 ctgtgtagat TAGCAGC agACACTCCT 769 1.000000 24-1 377 tatgactcct CTACAGT attatttttc 383 1.000000 25-1 555 gtgtttttta CAACAAC ctctcgaCTA 561 1.000000 26-1 596 CTCATTTgtc CAGCATA aaagaaagcg 602 1.000000 27-1 483 agacggggcc CAGCAGT ctttttttag 489 1.000000 28-1 212 tagtgaaaac AGGCAGC cctatGCTGA 218 1.000000 29-1 126 gcacgcccat CATCAAC ttatTTATTG 132 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 203 209 206 -w 1.000000 >2 484 490 487 -w 1.000000 >3 275 281 278 -w 1.000000 >4 399 405 402 -w 1.000000 >5 147 153 150 -w 1.000000 >6 201 207 204 -w 1.000000 >7 592 598 595 -w 1.000000 >8 266 272 269 -w 1.000000 >9 324 330 327 -w 1.000000 >10 779 785 782 -w 1.000000 >11 330 336 333 -w 1.000000 >12 230 236 233 -w 1.000000 >13 443 449 446 -w 1.000000 >14 719 725 722 -w 1.000000 >15 601 607 604 -w 1.000000 >16 169 175 172 -w 1.000000 >17 468 474 471 -w 1.000000 >18 668 674 671 -w 1.000000 >19 344 350 347 -w 1.000000 >20 436 442 439 -w 1.000000 >21 217 223 220 -w 1.000000 >22 604 610 607 -w 1.000000 >23 763 769 766 -w 1.000000 >24 377 383 380 -w 1.000000 >25 555 561 558 -w 1.000000 >26 596 602 599 -w 1.000000 >27 483 489 486 -w 1.000000 >28 212 218 215 -w 1.000000 >29 126 132 129 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 71 . . 0.9 2 53 . . . 0.2 3 . . 64 . 0.7 4 . 83 . . 1.4 5 84 . . . 0.9 6 44 . 42 . 0.5 7 . 58 . . 0.6 non- site . 19 . . site . 35 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 13 . . 9 2 4 . . . 2 3 . . 12 . 7 4 . 18 . . 14 5 12 . . . 9 6 2 . 5 . 5 7 . 9 . . 6 site . 3 . . 2 Weighted motif model: POS A C G T Prob 1 0.122335 0.707241 0.016920 0.153503 0.944301 2 0.529859 0.111630 0.205008 0.153503 0.191733 3 0.122335 0.111630 0.643879 0.122155 0.735882 4 0.028292 0.832633 0.016920 0.122155 1.433217 5 0.843339 0.017586 0.048268 0.090807 0.897574 6 0.435815 0.017586 0.424444 0.122155 0.492024 7 0.153683 0.581850 0.016920 0.247547 0.629963 Conservedness in bits: 5.324693 Conservedness in prob: 10.750545 Concensus sequence: CAGCAGC Complete log-likelihood ratio = 193 bits Missing position information = 151 bits Log-likelihood ratio statistic = 42 bits Degrees of freedom = 21 Information per parameter = 2.03 bits MOTIF B 1-1 523 ttttattttc ACCTAAACGA aaatcccgtg 532 1.000000 2-1 668 gcctacaatg ATATAAAAGG ctttgtcttg 677 1.000000 3-1 33 cttatatatt ATATAAAATA tgaatcatac 42 1.000000 4-1 38 tccgtttcaa AAATGAATAT aatcgtacgt 47 1.000000 5-1 449 aataccttaa ATAGAAAAGG aaagataata 458 1.000000 6-1 6 gggca AAATAAAAAA ggaaaaagag 15 1.000000 7-1 614 agacctctca AGAAGCACAA aaaaaggagg 623 1.000000 8-1 728 gaccgtgtat ATATAAGAGC tattcactat 737 1.000000 9-1 39 ataaaagacg AGAAAAAATA AAAACAAcgg 48 1.000000 10-1 407 tcttttgatg ACGCGAAAAG tagacttcgc 416 1.000000 11-1 446 tccattatgc AGCCATAAGA ggaggctgga 455 1.000000 12-1 641 aattattaaa AGAAAATAAA actatccttt 650 1.000000 13-1 635 ttcgtgccat TCATAAAATA ggaaaagata 644 1.000000 14-1 348 caagagtaca ATATGAAAAT cttttgcctt 357 1.000000 15-1 789 atacgctatc AAAAGAACGA at 798 1.000000 16-1 616 ggcaaaacag AACTGAAACA agtatattgg 625 1.000000 17-1 64 actttactgc ACGTGAATTG gatcttgagt 73 1.000000 18-1 626 cattccacgc AAATAAACAA tgtaaataag 635 1.000000 19-1 643 ctgtaatttg AAACAAATAA cgtaattctc 652 1.000000 20-1 720 accaaaacaa AACAAAAACA aaaacAAAAA 729 1.000000 21-1 142 tcatcgccga ATACGAAACG tacgtcatgc 151 1.000000 22-1 105 ctcgcgttgc AGAAATACGA ggtagacacg 114 1.000000 23-1 428 tgataaaaaa ATCAAGAAAA aaacctgatt 437 1.000000 24-1 433 aaaacctcga ACATAAAACA acactgaaac 442 1.000000 25-1 165 tcccttgatg ACCCAAAAAG agatgaaagt 174 1.000000 26-1 319 ataagtattt AAAAGAAAAG agacgaaccC 328 1.000000 27-1 41 gtacgctata AAAGAATCAA ctgaaaagtc 50 1.000000 28-1 520 tgatgcctac ATACAAAAGA gcgaaaggcg 529 1.000000 29-1 255 AAAAAAAaaa AAAAAAAAAA atgttctcaa 264 1.000000 sites: * * **** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 523 532 527 -w 1.000000 >2 668 677 672 -w 1.000000 >3 33 42 37 -w 1.000000 >4 38 47 42 -w 1.000000 >5 449 458 453 -w 1.000000 >6 6 15 10 -w 1.000000 >7 614 623 618 -w 1.000000 >8 728 737 732 -w 1.000000 >9 39 48 43 -w 1.000000 >10 407 416 411 -w 1.000000 >11 446 455 450 -w 1.000000 >12 641 650 645 -w 1.000000 >13 635 644 639 -w 1.000000 >14 348 357 352 -w 1.000000 >15 789 798 793 -w 1.000000 >16 616 625 620 -w 1.000000 >17 64 73 68 -w 1.000000 >18 626 635 630 -w 1.000000 >19 643 652 647 -w 1.000000 >20 720 729 724 -w 1.000000 >21 142 151 146 -w 1.000000 >22 105 114 109 -w 1.000000 >23 428 437 432 -w 1.000000 >24 433 442 437 -w 1.000000 >25 165 174 169 -w 1.000000 >26 319 328 323 -w 1.000000 >27 41 50 45 -w 1.000000 >28 520 529 524 -w 1.000000 >29 255 264 259 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 3 69 . . . 0.6 5 66 . 30 . 0.8 6 81 . . . 0.8 7 84 . . . 0.9 8 66 . . . 0.5 10 62 . 24 . 0.4 non- site 31 . . . site 78 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 3 8 . . . 6 5 7 . 2 . 8 6 11 . . . 8 7 12 . . . 9 8 7 . . . 5 10 6 . 1 . 4 site 10 . . . 7 Weighted motif model: POS A C G T Prob 1 0.906034 0.017586 0.016920 0.059459 1.136019 3 0.686599 0.205674 0.079616 0.028111 0.607213 5 0.655251 0.017586 0.299052 0.028111 0.750364 6 0.811991 0.048934 0.048268 0.090807 0.771914 7 0.843339 0.017586 0.048268 0.090807 0.897574 8 0.655251 0.205674 0.016920 0.122155 0.499823 10 0.623903 0.048934 0.236356 0.090807 0.449966 Conservedness in bits: 5.112872 Conservedness in prob: 8.656906 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 192 bits Missing position information = 138 bits Log-likelihood ratio statistic = 54 bits Degrees of freedom = 21 Information per parameter = 2.58 bits MOTIF C 1-1 266 gcctgtcacc CAATTGCAA atagcattta 274 1.000000 2-1 200 acttcgcgac CAAGAGCAA ccaccatttt 208 1.000000 3-1 592 ctatacttgt AAATAGAAA aatgatgttc 600 1.000000 4-1 622 gtgcaacgta CAAGAGCAA agtAGAAAAA 630 1.000000 5-1 202 aaatttccgc CAGAAGAAA cgctatggat 210 1.000000 6-1 658 aacaattgca GAAAAGCAA catactaata 666 1.000000 7-1 37 ttctgagagg CAAGAGTAA aaagttatga 45 1.000000 8-1 332 ACTTTTCcaa GAATAGTAA ttgccctata 340 1.000000 9-1 712 aatataggaa CAAAAGAAA aagaaaactg 720 1.000000 10-1 362 tggccagcta TAGAATAAA attagcccaG 370 1.000000 11-1 160 atatgataat TACCAGCAA tactaatgct 168 1.000000 12-1 762 tctatagatc CACTGGAAA gcttcgtggg 770 1.000000 13-1 396 gttttcgtct CAATAGAAA aagtgaaaca 404 1.000000 14-1 122 tgatactcct GACCAGTAA acattatcct 130 1.000000 15-1 224 acctacacga GAAAAGAAA catgattgac 232 1.000000 16-1 87 caaacagtta CAGGAACAA gaacaagaac 95 1.000000 17-1 132 ggttcaggcc CACAAGAAA caaacgaatc 140 1.000000 18-1 581 aaaaaaaagg CAGCATAAG agcaactcac 589 1.000000 19-1 96 gggtcagcag CAGCAACAA ggccactcca 104 1.000000 20-1 292 gaggcacacg CAGAAGCTA gatacttcca 300 1.000000 21-1 123 Ttcgatccag CAGCGTGAA tcatcgccga 131 1.000000 22-1 80 agccactcct CAACAGAAA accgtgctcg 88 1.000000 23-1 340 gctttgaaag TAACAGGAA gaagtgatgc 348 1.000000 24-1 154 gctaggggaa CTAGAGAAA gacggctcaa 162 1.000000 25-1 517 cgcacaatct CAACAGCCA ggctttgtgt 525 1.000000 26-1 338 Gagacgaacc CAGAAGAAA tcgcgaacgg 346 1.000000 27-1 770 actaaattaa TACTGGGAA gccaaaccAA 778 1.000000 28-1 696 ctgttgctgg CAAGAGGTA tatatatatg 704 1.000000 29-1 190 tacataatgg CACCAGTAA taaatgatga 198 1.000000 sites: *** ** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 266 274 270 -w 1.000000 >2 200 208 204 -w 1.000000 >3 592 600 596 -w 1.000000 >4 622 630 626 -w 1.000000 >5 202 210 206 -w 1.000000 >6 658 666 662 -w 1.000000 >7 37 45 41 -w 1.000000 >8 332 340 336 -w 1.000000 >9 712 720 716 -w 1.000000 >10 362 370 366 -w 1.000000 >11 160 168 164 -w 1.000000 >12 762 770 766 -w 1.000000 >13 396 404 400 -w 1.000000 >14 122 130 126 -w 1.000000 >15 224 232 228 -w 1.000000 >16 87 95 91 -w 1.000000 >17 132 140 136 -w 1.000000 >18 581 589 585 -w 1.000000 >19 96 104 100 -w 1.000000 >20 292 300 296 -w 1.000000 >21 123 131 127 -w 1.000000 >22 80 88 84 -w 1.000000 >23 340 348 344 -w 1.000000 >24 154 162 158 -w 1.000000 >25 517 525 521 -w 1.000000 >26 338 346 342 -w 1.000000 >27 770 778 774 -w 1.000000 >28 696 704 700 -w 1.000000 >29 190 198 194 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 64 . . 0.8 2 91 . . . 1.1 3 50 . 27 . 0.4 5 81 . . . 0.8 6 . . 77 . 1.2 8 84 . . . 0.9 9 91 . . . 1.1 non- site 31 . . . site 61 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 11 . . 8 2 14 . . . 11 3 3 . 1 . 4 5 11 . . . 8 6 . . 16 . 12 8 12 . . . 9 9 14 . . . 11 site 6 . . . 4 Weighted motif model: POS A C G T Prob 1 0.059639 0.644545 0.142312 0.153503 0.766796 2 0.906034 0.017586 0.016920 0.059459 1.136019 3 0.498511 0.205674 0.267704 0.028111 0.400182 5 0.811991 0.017586 0.110964 0.059459 0.838393 6 0.090987 0.017586 0.769271 0.122155 1.188951 8 0.843339 0.048934 0.016920 0.090807 0.896823 9 0.906034 0.017586 0.048268 0.028111 1.144756 Conservedness in bits: 6.371920 Conservedness in prob: 10.368550 Concensus sequence: CAAAGAA Complete log-likelihood ratio = 236 bits Missing position information = 183 bits Log-likelihood ratio statistic = 53 bits Degrees of freedom = 21 Information per parameter = 2.53 bits MOTIF D 1-1 610 TTGTGTGAag GTTGTGCAT ataaagggtt 618 1.000000 2-1 769 tcatcattgc AAATTTGGT aagatctcgc 777 1.000000 3-1 631 ATTCTCGCTa TTTGAGATT ttgtcttttt 639 1.000000 4-1 541 CTACTAGGTg ATATTGAGG cttttgtaca 549 1.000000 5-1 93 tcattcggca AATTTGAGA tcgacacgga 101 1.000000 6-1 586 tttttacttt TTTTTTTTT tgtttctgca 594 1.000000 7-1 689 tcctttccgg TTTTTTTCT caactaccgt 697 1.000000 8-1 759 ttaatatttg TTTTGGCAT ttgaaactcg 767 1.000000 9-1 532 gtacgtctta TTTTTGATT atatgctcga 540 1.000000 10-1 178 acagaatttc GTTTTGTAG tatagtttat 186 1.000000 11-1 234 tgatattggt TTATTGGAT aagttcatat 242 1.000000 12-1 182 aacagaggca GTTTGGTTT gttcacacct 190 1.000000 13-1 52 gaatagcaag CAAGTTCTT ttaggtttaa 60 1.000000 14-1 163 tgggcttata CTTTTTTCT ttactacttt 171 1.000000 15-1 146 aagaaactta AACTATCGC cattgtctca 154 1.000000 16-1 436 cttgacatta TATTGGCCA tttgatttat 444 1.000000 17-1 335 cttgaatgag AAACTTTTT gatgcctact 343 1.000000 18-1 128 catttcgacg AATTGTGTT ctctgctaaa 136 1.000000 19-1 309 cgaatccttc AATTTTTCT ggcaactttt 317 1.000000 20-1 459 gagtctttct TTACGGTGT ttggagacgt 467 1.000000 21-1 675 gttttaattg AATCGGCTT agcctgtttt 683 1.000000 22-1 629 GCAGTTGCGT ATTCGGAGT ccgctcacac 637 1.000000 23-1 582 tccaccaact TTATTGGCA agggaagaat 590 1.000000 24-1 348 gccttgtcct TCTTTGTTT caagcgttta 356 1.000000 25-1 569 AACctctcga CTATTGTAT accagtttct 577 1.000000 26-1 218 agttgtttca TATGTGTTT tacgaacgtt 226 1.000000 27-1 552 attagtgtga AATTTGATT ttcttggcca 560 1.000000 28-1 315 CTctacaccg AATTTGTCT ttactcctat 323 1.000000 29-1 137 ATCAACttat TTATTGTAT gaaatcactc 145 1.000000 sites: ****** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 610 618 614 -w 1.000000 >2 769 777 773 -w 1.000000 >3 631 639 635 -w 1.000000 >4 541 549 545 -w 1.000000 >5 93 101 97 -w 1.000000 >6 586 594 590 -w 1.000000 >7 689 697 693 -w 1.000000 >8 759 767 763 -w 1.000000 >9 532 540 536 -w 1.000000 >10 178 186 182 -w 1.000000 >11 234 242 238 -w 1.000000 >12 182 190 186 -w 1.000000 >13 52 60 56 -w 1.000000 >14 163 171 167 -w 1.000000 >15 146 154 150 -w 1.000000 >16 436 444 440 -w 1.000000 >17 335 343 339 -w 1.000000 >18 128 136 132 -w 1.000000 >19 309 317 313 -w 1.000000 >20 459 467 463 -w 1.000000 >21 675 683 679 -w 1.000000 >22 629 637 633 -w 1.000000 >23 582 590 586 -w 1.000000 >24 348 356 352 -w 1.000000 >25 569 577 573 -w 1.000000 >26 218 226 222 -w 1.000000 >27 552 560 556 -w 1.000000 >28 315 323 319 -w 1.000000 >29 137 145 141 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 37 . . 40 0.1 2 40 . . 53 0.4 3 . . . 62 0.5 4 . . . 69 0.6 5 . . 24 66 0.6 6 . . 64 . 1.0 9 . . . 75 0.6 non- site . . . 30 site . . . 59 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 1 . . 2 1 2 2 . . 4 4 3 . . . 6 5 4 . . . 8 6 5 . . 1 7 6 6 . . 12 . 10 9 . . . 10 6 site . . . 6 3 Weighted motif model: POS A C G T Prob 1 0.373119 0.111630 0.110964 0.404287 0.082674 2 0.404467 0.048934 0.016920 0.529679 0.408653 3 0.310423 0.048934 0.016920 0.623723 0.474663 4 0.028292 0.142978 0.142312 0.686418 0.574346 5 0.090987 0.017586 0.236356 0.655071 0.568654 6 0.028292 0.017586 0.643879 0.310243 0.995661 9 0.122335 0.048934 0.079616 0.749114 0.596903 Conservedness in bits: 3.701555 Conservedness in prob: 7.475960 Concensus sequence: TTTTTGT Complete log-likelihood ratio = 139 bits Missing position information = 115 bits Log-likelihood ratio statistic = 23 bits Degrees of freedom = 21 Information per parameter = 1.14 bits MOTIF E 1-1 792 cggtgtagag AATAAAA gg 798 1.000000 2-1 358 taagtctcaa AAAAAAA ttgggttact 364 1.000000 3-1 766 tcaatagtgc AAAAATA ggtaactaac 772 1.000000 4-1 634 AGAGCAAagt AGAAAAA tttggtttTT 640 1.000000 5-1 793 aaaaaaaaaa AAAAAAA a 799 1.000000 6-1 39 ggtagttgag AAAAAAA ccggaaagga 45 1.000000 7-1 139 atgcagaaac AAAAAAA aaaaaagtaa 145 1.000000 8-1 507 cgtagctcgt ATCAAAA taaaactagt 513 1.000000 9-1 49 AGAAAAAATA AAAACAA cggcaccaga 55 1.000000 10-1 200 agtttattag AAACAAA tgtgaataga 206 1.000000 11-1 613 tcttggaaaa ATAAAAA taaaaagtgg 619 1.000000 12-1 317 caggatgaaa AAAAAAA gacattgcac 323 1.000000 13-1 416 agtgaaacag ATAAAAA ttgttttaaa 422 1.000000 14-1 331 agtgataact CAAAAAA caagagtaca 337 1.000000 15-1 326 ttaatattcc AGAAAAA gaaattcctt 332 1.000000 16-1 177 cgCACCAGTc AAAAAAG acaagtttaa 183 1.000000 17-1 780 aataaaagct AAAAAAA ccaaaaaatt 786 1.000000 18-1 748 ttcggaatac CAATGAA gtatacatat 754 1.000000 19-1 449 attgggctgc AAGACAA ttttgttgtc 455 1.000000 20-1 735 AAACAaaaac AAAAACA ggctaagccg 741 1.000000 21-1 786 gtaaaaaggg AAAAAAA gcagatat 792 1.000000 22-1 749 aagtcagtaa CAACAAA tacccatcgt 755 1.000000 23-1 471 agaggcgacg ATGACCA cctatggcct 477 1.000000 24-1 256 TCTTACgtaa AAAAATA cttacagaga 262 1.000000 25-1 657 aaatgcaaaa AAAAAAA tgattcgaat 663 1.000000 26-1 551 cacaccttta AAAAAAA ccaagaacgt 557 1.000000 27-1 787 AAgccaaacc AAAAAAA ctataca 793 1.000000 28-1 167 atcccttaat AAAATAA tcgggcctta 173 1.000000 29-1 245 ggccaaaaaa AAAAAAA aaaAAAAAAA 251 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 792 798 795 -w 1.000000 >2 358 364 361 -w 1.000000 >3 766 772 769 -w 1.000000 >4 634 640 637 -w 1.000000 >5 793 799 796 -w 1.000000 >6 39 45 42 -w 1.000000 >7 139 145 142 -w 1.000000 >8 507 513 510 -w 1.000000 >9 49 55 52 -w 1.000000 >10 200 206 203 -w 1.000000 >11 613 619 616 -w 1.000000 >12 317 323 320 -w 1.000000 >13 416 422 419 -w 1.000000 >14 331 337 334 -w 1.000000 >15 326 332 329 -w 1.000000 >16 177 183 180 -w 1.000000 >17 780 786 783 -w 1.000000 >18 748 754 751 -w 1.000000 >19 449 455 452 -w 1.000000 >20 735 741 738 -w 1.000000 >21 786 792 789 -w 1.000000 >22 749 755 752 -w 1.000000 >23 471 477 474 -w 1.000000 >24 256 262 259 -w 1.000000 >25 657 663 660 -w 1.000000 >26 551 557 554 -w 1.000000 >27 787 793 790 -w 1.000000 >28 167 173 170 -w 1.000000 >29 245 251 248 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 84 . . . 1.0 2 75 . . . 0.6 3 81 . . . 0.8 4 84 . . . 0.9 5 78 . . . 0.7 6 81 . . . 0.8 7 91 . . . 1.1 non- site 31 . . . site 87 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 12 . . . 10 2 9 . . . 6 3 11 . . . 8 4 12 . . . 9 5 10 . . . 7 6 11 . . . 8 7 14 . . . 11 site 13 . . . 10 Weighted motif model: POS A C G T Prob 1 0.843339 0.111630 0.016920 0.028111 0.968591 2 0.749295 0.017586 0.079616 0.153503 0.636377 3 0.811991 0.048934 0.079616 0.059459 0.787450 4 0.843339 0.080282 0.016920 0.059459 0.911091 5 0.780643 0.111630 0.048268 0.059459 0.711783 6 0.811991 0.080282 0.016920 0.090807 0.802539 7 0.906034 0.017586 0.048268 0.028111 1.144756 Conservedness in bits: 5.962588 Conservedness in prob: 9.779793 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 222 bits Missing position information = 172 bits Log-likelihood ratio statistic = 49 bits Degrees of freedom = 21 Information per parameter = 2.38 bits MOTIF F 1-1 148 gacaaaatat ACGTTTC cgagacttct 154 1.000000 2-1 40 gtcctaaact TTGTTTG attatgaaag 46 1.000000 3-1 535 tgtatcacgg TGGTTTC agtctgtcat 541 1.000000 4-1 63 tacgtttacc TTGTGGC agcactagct 69 1.000000 5-1 131 tccaagagat TTGTTTG aatatacttT 137 1.000000 6-1 731 TGTaatcatt TTCTTTC ttctaatagc 737 1.000000 7-1 221 agcttatgca TTGCTTG taggtacatc 227 1.000000 8-1 322 aaagctttac ACTTTTC caaGAATAGT 328 1.000000 9-1 579 aaggtttggc TTCCTTT tagcactttc 585 1.000000 10-1 669 tcttaagtgt TTTTTTC tttagtctta 675 1.000000 11-1 535 ctccaaattt TGGATTT tgtgttcgaa 541 1.000000 12-1 483 caactttctt TTGTTTG catatctTTT 489 1.000000 13-1 175 gctaaagaca TTTGTTG aaaacgaatg 181 1.000000 14-1 458 tattactcaa ATGTGTC acaatttcaa 464 1.000000 15-1 285 TTtataattt TGGCGTT cagcaagcgc 291 1.000000 16-1 467 ttgtttcaga TCCTTTG tcgggccgga 473 1.000000 17-1 216 catttttctt TTCTTTT cttttcCTTT 222 1.000000 18-1 692 tttatcataa TTGTTTG ggattaatcc 698 1.000000 19-1 549 aggatgccct TTTTGAC gtattgaatg 555 1.000000 20-1 127 gctatagatt TCCCTAC gtaccagtcg 133 1.000000 21-1 736 tgatttattt TGGTTTG GCTTAAATCT 742 1.000000 22-1 502 ggaatatctt TGTTTAC tcattaaaat 508 1.000000 23-1 662 TAACGTTTtt TTTTTTT ttttaaaggc 668 1.000000 24-1 245 tattatatta TTCTTAC gtaaAAAAAT 251 1.000000 25-1 786 gtacgcaaac ATTTTTG gctaccgg 792 1.000000 26-1 665 tgtgacaaaa TTGTTTC tgcctccaac 671 1.000000 27-1 738 ttcttctctc TTCTTTC cttcctcgaa 744 1.000000 28-1 547 gcgatataaa TTTTTTT cacgggattt 553 1.000000 29-1 106 ttcccaactc ATGTTAG aatgcacgcc 112 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 148 154 151 -w 1.000000 >2 40 46 43 -w 1.000000 >3 535 541 538 -w 1.000000 >4 63 69 66 -w 1.000000 >5 131 137 134 -w 1.000000 >6 731 737 734 -w 1.000000 >7 221 227 224 -w 1.000000 >8 322 328 325 -w 1.000000 >9 579 585 582 -w 1.000000 >10 669 675 672 -w 1.000000 >11 535 541 538 -w 1.000000 >12 483 489 486 -w 1.000000 >13 175 181 178 -w 1.000000 >14 458 464 461 -w 1.000000 >15 285 291 288 -w 1.000000 >16 467 473 470 -w 1.000000 >17 216 222 219 -w 1.000000 >18 692 698 695 -w 1.000000 >19 549 555 552 -w 1.000000 >20 127 133 130 -w 1.000000 >21 736 742 739 -w 1.000000 >22 502 508 505 -w 1.000000 >23 662 668 665 -w 1.000000 >24 245 251 248 -w 1.000000 >25 786 792 789 -w 1.000000 >26 665 671 668 -w 1.000000 >27 738 744 741 -w 1.000000 >28 547 553 550 -w 1.000000 >29 106 112 109 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 78 0.8 2 . . . 66 0.5 3 . 24 46 . 0.5 4 . . . 75 0.7 5 . . . 81 0.9 6 . . . 75 0.7 7 . 43 33 . 0.5 non- site . . . 30 site . . . 63 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 8 2 . . . 7 5 3 . 1 6 . 5 4 . . . 10 7 5 . . . 11 9 6 . . . 10 7 7 . 5 3 . 5 site . . . 7 4 Weighted motif model: POS A C G T Prob 1 0.185031 0.017586 0.016920 0.780462 0.784280 2 0.028292 0.142978 0.173660 0.655071 0.531845 3 0.028292 0.237022 0.455792 0.278895 0.519000 4 0.059639 0.142978 0.048268 0.749114 0.657774 5 0.028292 0.017586 0.142312 0.811810 0.916626 6 0.185031 0.017586 0.048268 0.749114 0.662656 7 0.028292 0.425110 0.330400 0.216199 0.546944 Conservedness in bits: 4.619125 Conservedness in prob: 8.792253 Concensus sequence: TTGTTTC Complete log-likelihood ratio = 176 bits Missing position information = 132 bits Log-likelihood ratio statistic = 43 bits Degrees of freedom = 21 Information per parameter = 2.07 bits MOTIF G 1-1 396 tatatatacc TCTTGCC agcaacaggc 402 1.000000 2-1 3 tt TTTGCCA agggacgagt 9 1.000000 3-1 170 gttataaggt TGTTTCA tatgtgtttt 176 1.000000 4-1 219 gttaaccatc TTTATCA caaaatatac 225 1.000000 5-1 405 atgaaacgaa TTTTGAC ttgatgagac 411 1.000000 6-1 539 gttttagatc TGTTTCA ccctggaact 545 1.000000 7-1 66 tatattagta TGTTGCT tttctgcaat 72 1.000000 8-1 433 gatatttgtt TGTTTAC catttttgtt 439 1.000000 9-1 203 gagtcttgat TCTTCCC atataatatt 209 1.000000 10-1 78 tcagctgctt TGCTGCA ctgttcaggg 84 1.000000 11-1 262 tcctaaaacg TGTTGAC aacacttcgg 268 1.000000 12-1 516 agcgatgcaa TTTTCAA catgcagcca 522 1.000000 13-1 315 aactctagag TGTTGCA taatttgaaa 321 1.000000 14-1 205 TCCTTTTgaa TCTTCCA attgaaagac 211 1.000000 15-1 505 gagatctaga TGTTGCC tatttctcga 511 1.000000 16-1 265 atgtaagagc TGTTCAC ttgtttttat 271 1.000000 17-1 725 tatcgtgaac TTTTCCA gtatttacgt 731 1.000000 18-1 89 acaatagacc TGTTCAA atttttgata 95 1.000000 19-1 753 cctttatctt TTTTCCT ttaagagcag 759 1.000000 20-1 100 cgggttcctg TGTTCAA tacggtgatt 106 1.000000 21-1 516 cgcttggaac TGTTGCA gctgttggcg 522 1.000000 22-1 390 aatagtttaa TTTTCCA aaaaggttcc 396 1.000000 23-1 235 agatacaaca TGTTCCA tgatatggaa 241 1.000000 24-1 530 tcgcatcagg TGTTTAC cagaagtgta 536 1.000000 25-1 54 ttggcaggat TGTGGCA agggcaatcg 60 1.000000 26-1 179 tttcatctca TGTTGCC cattttgttc 185 1.000000 27-1 99 TTAAacatat TGATGAA aaacgctaac 105 1.000000 28-1 473 tgcaaaaccc TTTATAT gcacaacctt 479 1.000000 29-1 618 ttcgtggtcc TTTTTCC taatttgccc 624 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 396 402 399 -w 1.000000 >2 3 9 6 -w 1.000000 >3 170 176 173 -w 1.000000 >4 219 225 222 -w 1.000000 >5 405 411 408 -w 1.000000 >6 539 545 542 -w 1.000000 >7 66 72 69 -w 1.000000 >8 433 439 436 -w 1.000000 >9 203 209 206 -w 1.000000 >10 78 84 81 -w 1.000000 >11 262 268 265 -w 1.000000 >12 516 522 519 -w 1.000000 >13 315 321 318 -w 1.000000 >14 205 211 208 -w 1.000000 >15 505 511 508 -w 1.000000 >16 265 271 268 -w 1.000000 >17 725 731 728 -w 1.000000 >18 89 95 92 -w 1.000000 >19 753 759 756 -w 1.000000 >20 100 106 103 -w 1.000000 >21 516 522 519 -w 1.000000 >22 390 396 393 -w 1.000000 >23 235 241 238 -w 1.000000 >24 530 536 533 -w 1.000000 >25 54 60 57 -w 1.000000 >26 179 185 182 -w 1.000000 >27 99 105 102 -w 1.000000 >28 473 479 476 -w 1.000000 >29 618 624 621 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 94 1.3 2 . . 55 . 0.7 3 . . . 87 1.0 4 . . . 81 0.8 5 . 36 36 . 0.5 6 . 61 . . 0.9 7 53 33 . . 0.4 non- site . . . 30 site . . . 49 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 15 13 2 . . 9 . 7 3 . . . 13 10 4 . . . 11 8 5 . 3 3 . 5 6 . 10 . . 9 7 4 3 . . 4 site . . . 3 2 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.016920 0.937202 1.282005 2 0.028292 0.111630 0.549835 0.310243 0.674314 3 0.059639 0.048934 0.016920 0.874506 1.013874 4 0.090987 0.017586 0.079616 0.811810 0.810637 5 0.028292 0.362414 0.361748 0.247547 0.497735 6 0.341771 0.613197 0.016920 0.028111 0.911018 7 0.529859 0.331066 0.016920 0.122155 0.441209 Conservedness in bits: 5.630792 Conservedness in prob: 9.453094 Concensus sequence: TGTTGCC Complete log-likelihood ratio = 213 bits Missing position information = 162 bits Log-likelihood ratio statistic = 50 bits Degrees of freedom = 21 Information per parameter = 2.41 bits MOTIF H 1-1 6 taagt GATAACGTCT ctagcgtagc 15 1.000000 2-1 323 tgtaattgct CGTGTTGGAT tgagcgaaag 332 1.000000 3-1 199 gaacgttcag GGTGACGTAT tgtcatactg 208 1.000000 4-1 530 gtatagaacc ACTACTAGGT gATATTGAGG 539 1.000000 5-1 304 ttactaatga ACTGGTTGAT attattactg 313 1.000000 6-1 452 actggagagg GCAGTTTACT ttcacatact 461 1.000000 7-1 402 acgaatttat CCTTATGTAT gttcttttga 411 1.000000 8-1 69 catcgcctat GCTGTTATTA acttctACAT 78 1.000000 9-1 486 TTCCTTTttc GCTGCCTCTT tttcccatgc 495 1.000000 10-1 380 Aattagccca GCTATATTTT tatagcgtct 389 1.000000 11-1 82 cattatcaat CCTTACATAT cagcttccgt 91 1.000000 12-1 377 cttcattgtt GCTTTATTTT tccaagtaag 386 1.000000 13-1 508 acaactcttc GCGGTCAGGT ctcgacacca 517 1.000000 14-1 588 attcggtgca GCATTTTAAT tcagaattat 597 1.000000 15-1 703 gctcaagaga GCTTCTTTTT ttatgctatc 712 1.000000 16-1 568 gaatttcagt GCATAAGATT acatttgtcg 577 1.000000 17-1 19 ctactgagca GCTTGAGGCT ttcaaccatc 28 1.000000 18-1 560 cgcccataaa TCGTCTATAT taaaaaaaag 569 1.000000 19-1 591 cacttttcgc GCTGTCTCAT tttggtgcga 600 1.000000 20-1 4 agg CCTGACAAGA tctgtggcac 13 1.000000 21-1 743 tttTGGTTTG GCTTAAATCT tcgaggaaat 752 1.000000 22-1 619 GTtaatctac GCAGTTGCGT ATTCGGAGTc 628 1.000000 23-1 650 gtgacctatt GTTAACGTTT ttTTTTTTTt 659 1.000000 24-1 775 acaaaaatac GCTATCATCT accgaatata 784 1.000000 25-1 392 agcaaacgct GCAGTTTTTT acatctttga 401 1.000000 26-1 42 tgattcgcgg GCTGTTACTT atcctatata 51 1.000000 27-1 137 taatgctgtc GCTATCTCAT caaaacagtg 146 1.000000 28-1 224 GCAGCcctat GCTGATGCCT aaggcaccaa 233 1.000000 29-1 567 gttcccgcct GCTTATTCTT tttccagctc 576 1.000000 sites: **** ** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 6 15 10 -w 1.000000 >2 323 332 327 -w 1.000000 >3 199 208 203 -w 1.000000 >4 530 539 534 -w 1.000000 >5 304 313 308 -w 1.000000 >6 452 461 456 -w 1.000000 >7 402 411 406 -w 1.000000 >8 69 78 73 -w 1.000000 >9 486 495 490 -w 1.000000 >10 380 389 384 -w 1.000000 >11 82 91 86 -w 1.000000 >12 377 386 381 -w 1.000000 >13 508 517 512 -w 1.000000 >14 588 597 592 -w 1.000000 >15 703 712 707 -w 1.000000 >16 568 577 572 -w 1.000000 >17 19 28 23 -w 1.000000 >18 560 569 564 -w 1.000000 >19 591 600 595 -w 1.000000 >20 4 13 8 -w 1.000000 >21 743 752 747 -w 1.000000 >22 619 628 623 -w 1.000000 >23 650 659 654 -w 1.000000 >24 775 784 779 -w 1.000000 >25 392 401 396 -w 1.000000 >26 42 51 46 -w 1.000000 >27 137 146 141 -w 1.000000 >28 224 233 228 -w 1.000000 >29 567 576 571 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 71 . 1.0 2 . 80 . . 1.3 3 . . . 72 0.6 4 . . 42 . 0.4 6 . 33 . 47 0.3 7 . . 30 37 0.2 10 . . . 87 1.0 non- site . . 18 30 site . . 23 42 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 14 . 10 2 . 16 . . 13 3 . . . 9 6 4 . . 5 . 4 6 . 3 . 3 3 7 . . 2 1 2 10 . . . 13 10 site . . 1 2 1 Weighted motif model: POS A C G T Prob 1 0.090987 0.142978 0.706575 0.059459 0.994659 2 0.059639 0.801285 0.079616 0.059459 1.261804 3 0.185031 0.017586 0.079616 0.717766 0.574818 4 0.216379 0.017586 0.424444 0.341591 0.379575 6 0.185031 0.331066 0.016920 0.466983 0.337028 7 0.310423 0.017586 0.299052 0.372939 0.243431 10 0.090987 0.017586 0.016920 0.874506 1.030802 Conservedness in bits: 4.822117 Conservedness in prob: 9.338311 Concensus sequence: GCTGCGT Complete log-likelihood ratio = 177 bits Missing position information = 131 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.19 bits MOTIF I 1-1 597 tcggaaattt GCATTGTGTGA agGTTGTGCA 607 1.000000 2-1 174 cgtcccctca GCAATGTTGAA gattcacttc 184 1.000000 3-1 619 tctaaaatcg GCATTCTCGCT aTTTGAGATT 629 1.000000 4-1 780 tttggaggca ACATAGATAGA taaacgtgca 790 1.000000 5-1 359 aaatcaccct GCATTGCCTCT ttatttgacg 369 1.000000 6-1 713 cagaaactat ATATACGTTGT aatcattTTC 723 1.000000 7-1 736 TTTTgccctt AGATTGTATTA taaagctctg 746 1.000000 8-1 85 ATTAacttct ACATCCATCTG atctagcagg 95 1.000000 9-1 223 taatattact GCATTTTCTGT attaaacatg 233 1.000000 10-1 287 cagctgaaac ACATTCTTGTT acatctgtca 297 1.000000 11-1 420 tttttgtgtt GCAAGCGTTGA tcctttccat 430 1.000000 12-1 251 attcaatggg ACATTGATCCA caactagatg 261 1.000000 13-1 336 ttgaaacaca GCATTTCTTTT cggagagctc 346 1.000000 14-1 564 gtttggaaga ACATTGGTATT ttcattcggt 574 1.000000 15-1 249 tgactgcgtc AGATTCAAAAA cctgcaaagT 259 1.000000 16-1 1 ACATTGAACGT gattttggaa 11 1.000000 17-1 485 cacccaatct ACATTTAGGGT acctgtcaca 495 1.000000 18-1 220 aaaagtatta ACATTTACTAA agatccaatg 230 1.000000 19-1 664 gtaattctcg GGATTGGTTTT atttaaatga 674 1.000000 20-1 575 cttcaaactc AGATTGACCAT cttccttcct 585 1.000000 21-1 103 tggtctccgt GCATCGCGACT tcgatccagC 113 1.000000 22-1 215 gcttactaaa GCATTCCTCTT tatccaagtc 225 1.000000 23-1 772 tTAGCAGCag ACACTCCTTTT tttcttcata 782 1.000000 24-1 558 ggtacatggt GCTTTCCTTAT gctcactatt 568 1.000000 25-1 90 attcgagaaa GCTTCGGTGGT gttgcctggt 100 1.000000 26-1 751 cggtgtgtat GCATTGATATT cccattagga 761 1.000000 27-1 82 ccgggggagc GCATACTTTAA acatatTGAT 92 1.000000 28-1 595 gaacgacaga GCATGCAGAGT ccgggtaata 605 1.000000 29-1 77 aaaatggatg GCATCGGGATT aatgaccatt 87 1.000000 sites: ****** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 597 607 602 -w 1.000000 >2 174 184 179 -w 1.000000 >3 619 629 624 -w 1.000000 >4 780 790 785 -w 1.000000 >5 359 369 364 -w 1.000000 >6 713 723 718 -w 1.000000 >7 736 746 741 -w 1.000000 >8 85 95 90 -w 1.000000 >9 223 233 228 -w 1.000000 >10 287 297 292 -w 1.000000 >11 420 430 425 -w 1.000000 >12 251 261 256 -w 1.000000 >13 336 346 341 -w 1.000000 >14 564 574 569 -w 1.000000 >15 249 259 254 -w 1.000000 >16 1 11 6 -w 1.000000 >17 485 495 490 -w 1.000000 >18 220 230 225 -w 1.000000 >19 664 674 669 -w 1.000000 >20 575 585 580 -w 1.000000 >21 103 113 108 -w 1.000000 >22 215 225 220 -w 1.000000 >23 772 782 777 -w 1.000000 >24 558 568 563 -w 1.000000 >25 90 100 95 -w 1.000000 >26 751 761 756 -w 1.000000 >27 82 92 87 -w 1.000000 >28 595 605 600 -w 1.000000 >29 77 87 82 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 . 52 . 0.8 2 . 77 . . 1.2 3 87 . . . 1.0 4 . . . 84 0.9 5 . . . 66 0.4 6 . 36 46 . 0.7 11 . . . 62 0.5 non- site . . . 30 site . . . 35 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 . 8 . 8 2 . 15 . . 12 3 13 . . . 10 4 . . . 12 9 5 . . . 7 4 6 . 3 6 . 7 11 . . . 6 5 site . . . 1 0 Weighted motif model: POS A C G T Prob 1 0.435815 0.017586 0.518487 0.028111 0.820011 2 0.028292 0.769937 0.142312 0.059459 1.239918 3 0.874687 0.017586 0.016920 0.090807 1.024164 4 0.090987 0.048934 0.016920 0.843158 0.903181 5 0.122335 0.142978 0.079616 0.655071 0.384751 6 0.028292 0.362414 0.455792 0.153503 0.664209 11 0.310423 0.017586 0.048268 0.623723 0.475414 Conservedness in bits: 5.511649 Conservedness in prob: 9.796291 Concensus sequence: GCATTGT Complete log-likelihood ratio = 205 bits Missing position information = 158 bits Log-likelihood ratio statistic = 46 bits Degrees of freedom = 21 Information per parameter = 2.23 bits MOTIF J 1-1 689 tgagtttacg TTTGTTTT taataatcag 696 1.000000 2-1 424 gtcatagcct ATTGGTTT gtgccgttct 431 1.000000 3-1 332 ctacagggct TTCTTTTT aaaacaggat 339 1.000000 4-1 649 AAtttggttt TTATTTTT ttaagcaaca 656 1.000000 5-1 529 tttaaaactt TTTTTTTT tgaaagtcct 536 1.000000 6-1 417 gcacaggcgg ATACTTTT tagtttggga 424 1.000000 7-1 722 tttttccttt TTTATTTT gcccttAGAT 729 1.000000 8-1 290 gtgcggttga TTCGTTTT atacaactta 297 1.000000 9-1 475 ggcactcact TTTCCTTT ttcGCTGCCT 482 1.000000 10-1 693 ttataagttc TCCTTTCT ttcactttat 700 1.000000 11-1 38 ttacttcttc TTTGTTTT atgtgttgtt 45 1.000000 12-1 497 TTGcatatct TTTTTTTT cagcgatgca 504 1.000000 13-1 577 taccactacg TTCCTTTT acaattagat 584 1.000000 14-1 194 atctttttag ATCCTTTT gaaTCTTCCA 201 1.000000 15-1 269 Acctgcaaag TTTGTTTT tataatttTG 276 1.000000 16-1 786 aaatatataa ATACTTCT ccaaaaa 793 1.000000 17-1 229 TTTTcttttc CTTTTTTT acaatagcta 236 1.000000 18-1 332 aaatttatac TGTCTTTT gcacttcaag 339 1.000000 19-1 426 tataacttta TTTTTTTT tattaattgg 433 1.000000 20-1 636 catatatctg CTTTTTTT ccctttttac 643 1.000000 21-1 704 tgtttttgtt TTTGTTTT gttttggttt 711 1.000000 22-1 769 ccatcgttga TTCTTTTT ggtaagatct 776 1.000000 23-1 379 aacagggtat TTTTTTTT tcacttctac 386 1.000000 24-1 330 aaatgaacaa ATTATTTT gccttgtcct 337 1.000000 25-1 363 ctgggtataa CCCTTTTT agggcagtac 370 1.000000 26-1 585 tgtgcagtag TCTCATTT gtcCAGCATA 592 1.000000 27-1 224 caaggaaaga CTACTTTT cttacagagg 231 1.000000 28-1 299 ataccatcct TTTATTCT ctacaccgAA 306 1.000000 29-1 483 tattctcttt TTTGTTTT attcttttct 490 1.000000 sites: *** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 689 696 692 -w 1.000000 >2 424 431 427 -w 1.000000 >3 332 339 335 -w 1.000000 >4 649 656 652 -w 1.000000 >5 529 536 532 -w 1.000000 >6 417 424 420 -w 1.000000 >7 722 729 725 -w 1.000000 >8 290 297 293 -w 1.000000 >9 475 482 478 -w 1.000000 >10 693 700 696 -w 1.000000 >11 38 45 41 -w 1.000000 >12 497 504 500 -w 1.000000 >13 577 584 580 -w 1.000000 >14 194 201 197 -w 1.000000 >15 269 276 272 -w 1.000000 >16 786 793 789 -w 1.000000 >17 229 236 232 -w 1.000000 >18 332 339 335 -w 1.000000 >19 426 433 429 -w 1.000000 >20 636 643 639 -w 1.000000 >21 704 711 707 -w 1.000000 >22 769 776 772 -w 1.000000 >23 379 386 382 -w 1.000000 >24 330 337 333 -w 1.000000 >25 363 370 366 -w 1.000000 >26 585 592 588 -w 1.000000 >27 224 231 227 -w 1.000000 >28 299 306 302 -w 1.000000 >29 483 490 486 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 66 0.4 2 . . . 81 0.9 3 . 24 . 59 0.4 5 . . . 84 0.9 6 . . . 94 1.3 7 . . . 84 1.0 8 . . . 94 1.3 non- site . . . 30 site . . . 85 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 7 4 2 . . . 11 9 3 . 1 . 6 4 5 . . . 12 9 6 . . . 15 13 7 . . . 12 10 8 . . . 15 13 site . . . 12 10 Weighted motif model: POS A C G T Prob 1 0.185031 0.142978 0.016920 0.655071 0.449753 2 0.028292 0.111630 0.048268 0.811810 0.850035 3 0.153683 0.237022 0.016920 0.592375 0.410057 5 0.059639 0.048934 0.048268 0.843158 0.887004 6 0.028292 0.017586 0.016920 0.937202 1.282005 7 0.028292 0.111630 0.016920 0.843158 0.975223 8 0.028292 0.017586 0.016920 0.937202 1.282005 Conservedness in bits: 6.136081 Conservedness in prob: 9.507060 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 233 bits Missing position information = 169 bits Log-likelihood ratio statistic = 64 bits Degrees of freedom = 21 Information per parameter = 3.05 bits seed 6 time: 25 seconds (0.42 minutes) MOTIF A 1-1 4 taa GTGATAA cgtctctagc 10 1.000000 2-1 320 tactgtaatt GCTCGTG ttggattgag 326 1.000000 3-1 121 gggtagttca GCTAGGG aaggtcgggt 127 1.000000 4-1 509 tttggcgatg GCTCGAG acaggtatag 515 1.000000 5-1 188 aggttatgct GCTGAAA tttccgccag 194 1.000000 6-1 655 tgaaacaatt GCAGAAA agcaacatac 661 1.000000 7-1 131 ctgagagaat GCAGAAA caaaaaAAAA 137 1.000000 8-1 353 gccctatata GCACGAC tactccactc 359 1.000000 9-1 659 tgggacgcct GCTAAAA gcttattcta 665 1.000000 10-1 163 ctacatcatt GCACAAC agaatttcgT 169 1.000000 11-1 564 agggaagatt GCTCCAA acgcaaataa 570 1.000000 12-1 310 cccattacag GATGAAA AAAAAAAgac 316 1.000000 13-1 165 aacccataaa GCTAAAG acatttgttg 171 1.000000 14-1 1 GCAGAAG tatcactaac 7 1.000000 15-1 693 TAttgctact GCTCAAG agagcttctt 699 1.000000 16-1 496 ctaagagcgc GCGCGAG gcgtcgaaat 502 1.000000 17-1 431 gcaccactta GCACAAG tacgtccacc 437 1.000000 18-1 741 acactggttc GGAATAC caatgaagta 747 1.000000 19-1 92 AACAGggtca GCAGCAG caacaaggcc 98 1.000000 20-1 20 aagatctgtg GCACAAG taggcggcat 26 1.000000 21-1 37 gtaagcacgt GCTCAAG tgttgcccga 43 1.000000 22-1 34 agtagggcct ACTAAAA tggcgtggta 40 1.000000 23-1 306 attacttctt GCACAAA gatgctaaca 312 1.000000 24-1 167 gagaaagacg GCTCAAA aggtctcttc 173 1.000000 25-1 508 caagaatgtc GCACAAT ctcaacagcc 514 1.000000 26-1 369 tttgatatat GCTAGAA atcgcctaac 375 1.000000 27-1 218 tcaagccaag GAAAGAC tactttTCTT 224 1.000000 28-1 480 ccctttatat GCACAAC cttcacacaa 486 1.000000 29-1 518 aaggttcttt GCAACAG cactgaaaat 524 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 4 10 7 -w 1.000000 >2 320 326 323 -w 1.000000 >3 121 127 124 -w 1.000000 >4 509 515 512 -w 1.000000 >5 188 194 191 -w 1.000000 >6 655 661 658 -w 1.000000 >7 131 137 134 -w 1.000000 >8 353 359 356 -w 1.000000 >9 659 665 662 -w 1.000000 >10 163 169 166 -w 1.000000 >11 564 570 567 -w 1.000000 >12 310 316 313 -w 1.000000 >13 165 171 168 -w 1.000000 >14 1 7 4 -w 1.000000 >15 693 699 696 -w 1.000000 >16 496 502 499 -w 1.000000 >17 431 437 434 -w 1.000000 >18 741 747 744 -w 1.000000 >19 92 98 95 -w 1.000000 >20 20 26 23 -w 1.000000 >21 37 43 40 -w 1.000000 >22 34 40 37 -w 1.000000 >23 306 312 309 -w 1.000000 >24 167 173 170 -w 1.000000 >25 508 514 511 -w 1.000000 >26 369 375 372 -w 1.000000 >27 218 224 221 -w 1.000000 >28 480 486 483 -w 1.000000 >29 518 524 521 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 89 . 1.7 2 . 80 . . 1.2 3 47 . . 44 0.3 4 . 46 . . 0.5 5 56 . 24 . 0.3 6 87 . . . 1.0 7 37 . 39 . 0.4 non- site 31 19 18 . site 39 23 28 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 20 . 17 2 . 16 . . 12 3 3 . . 2 3 4 . 6 . . 5 5 5 . 1 . 3 6 13 . . . 10 7 1 . 4 . 4 site 1 1 2 . 2 Weighted motif model: POS A C G T Prob 1 0.059639 0.017586 0.894663 0.028111 1.726266 2 0.090987 0.801285 0.048268 0.059459 1.246089 3 0.467163 0.017586 0.079616 0.435635 0.330812 4 0.310423 0.456458 0.205008 0.028111 0.495546 5 0.561207 0.111630 0.236356 0.090807 0.309798 6 0.874687 0.017586 0.048268 0.059459 1.007808 7 0.373119 0.174326 0.393096 0.059459 0.354067 Conservedness in bits: 5.470386 Conservedness in prob: 9.560252 Concensus sequence: GCACAAG Complete log-likelihood ratio = 201 bits Missing position information = 159 bits Log-likelihood ratio statistic = 41 bits Degrees of freedom = 21 Information per parameter = 1.99 bits MOTIF B 1-1 627 atataaaggg TTTTGCATA acggacgttt 635 1.000000 2-1 87 TTTacaggga GTGGCTTTT gaagggactt 95 1.000000 3-1 543 ggtggtttca GTCTGTCAT gaggaataag 551 1.000000 4-1 641 agtAGAAAAA TTTGGTTTT taTTTTTTTa 649 1.000000 5-1 405 atgaaacgaa TTTTGACTT gatgagacga 413 1.000000 6-1 474 cacatactct TTTATCTTT ctgaagtaaa 482 1.000000 7-1 720 tctttttcct TTTTTATTT tgcccttaga 728 1.000000 8-1 123 actcatcttg TTGCTGTTC tacgtgcttc 131 1.000000 9-1 195 gaaggcaaga GTCTTGATT cttcccatat 203 1.000000 10-1 670 cttaagtgtt TTTTTCTTT agtcttataa 678 1.000000 11-1 393 ccttcagtaa TTTTTTTTT ttaatttATT 401 1.000000 12-1 709 attcaaaaaa TTTCTATTT acttttatat 717 1.000000 13-1 382 AAacgccgtt GTCCGTTTT cgtctcaatA 390 1.000000 14-1 289 ctctatagcg GTTCTATTT ctgttaacaa 297 1.000000 15-1 676 Tcgtgtctgg TATATATTA ttgctactGC 684 1.000000 16-1 317 taatcaatct GTTCGCTTT aaggaagatc 325 1.000000 17-1 524 caaattttag GTTAGCTTT caattgtaaa 532 1.000000 18-1 90 caatagacct GTTCAAATT tttgatacct 98 1.000000 19-1 479 gatgcctcaa TCCTTCTTT tgcttccata 487 1.000000 20-1 71 gcatgtgact GTTCATTAT tgcaatgggg 79 1.000000 21-1 713 ttttgttttg TTTTGGTTT ggtttgattt 721 1.000000 22-1 765 atacccatcg TTGATTCTT tttggtaaga 773 1.000000 23-1 780 agacactcct TTTTTTCTT catactatag 788 1.000000 24-1 578 tgctcactat TTCGGATTT acttctagtc 586 1.000000 25-1 534 caggctttgt GTTAGTATT ttgtgttTTT 542 1.000000 26-1 192 tgcccatttt GTTCGCTTT gttataaagt 200 1.000000 27-1 621 tatatctcgg GTTCATTTT ttacgtcggt 629 1.000000 28-1 186 gggccttatc ATTTGATTC aagatgatag 194 1.000000 29-1 481 tatattctct TTTTTGTTT tattCTTTTC 489 1.000000 sites: *** * *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 627 635 631 -w 1.000000 >2 87 95 91 -w 1.000000 >3 543 551 547 -w 1.000000 >4 641 649 645 -w 1.000000 >5 405 413 409 -w 1.000000 >6 474 482 478 -w 1.000000 >7 720 728 724 -w 1.000000 >8 123 131 127 -w 1.000000 >9 195 203 199 -w 1.000000 >10 670 678 674 -w 1.000000 >11 393 401 397 -w 1.000000 >12 709 717 713 -w 1.000000 >13 382 390 386 -w 1.000000 >14 289 297 293 -w 1.000000 >15 676 684 680 -w 1.000000 >16 317 325 321 -w 1.000000 >17 524 532 528 -w 1.000000 >18 90 98 94 -w 1.000000 >19 479 487 483 -w 1.000000 >20 71 79 75 -w 1.000000 >21 713 721 717 -w 1.000000 >22 765 773 769 -w 1.000000 >23 780 788 784 -w 1.000000 >24 578 586 582 -w 1.000000 >25 534 542 538 -w 1.000000 >26 192 200 196 -w 1.000000 >27 621 629 625 -w 1.000000 >28 186 194 190 -w 1.000000 >29 481 489 485 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 39 53 0.6 2 . . . 87 1.0 3 . . . 69 0.6 5 . . 39 44 0.4 7 . . . 69 0.5 8 . . . 87 1.0 9 . . . 81 0.8 non- site . . . 30 site . . . 73 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 4 4 6 2 . . . 13 10 3 . . . 8 6 5 . . 4 2 4 7 . . . 8 5 8 . . . 13 10 9 . . . 11 8 site . . . 9 6 Weighted motif model: POS A C G T Prob 1 0.059639 0.017586 0.393096 0.529679 0.632295 2 0.059639 0.048934 0.016920 0.874506 1.013874 3 0.028292 0.174326 0.110964 0.686418 0.582835 5 0.122335 0.048934 0.393096 0.435635 0.377588 7 0.153683 0.142978 0.016920 0.686418 0.512350 8 0.090987 0.017586 0.016920 0.874506 1.030802 9 0.090987 0.080282 0.016920 0.811810 0.808618 Conservedness in bits: 4.958362 Conservedness in prob: 8.850276 Concensus sequence: GTTGTTT Complete log-likelihood ratio = 185 bits Missing position information = 135 bits Log-likelihood ratio statistic = 49 bits Degrees of freedom = 21 Information per parameter = 2.38 bits MOTIF C 1-1 790 ttcggtgtag AGAATAAA agg 797 1.000000 2-1 585 GGAATtgccg TACAAAAA atcgatctag 592 1.000000 3-1 763 GGTTCAATAG TGCAAAAA taggtaacta 770 1.000000 4-1 660 taTTTTTTTa AGCAACAT cagctgcact 667 1.000000 5-1 785 aaacaaacaa AAAAAAAA aAAAAAAA 792 1.000000 6-1 37 acggtagttg AGAAAAAA accggaaagg 44 1.000000 7-1 144 GAAAcaaaaa AAAAAAAA gtaaaaattt 151 1.000000 8-1 553 atatcgtccg AGAATAAG gctttactgt 560 1.000000 9-1 314 ataccgatca TGGAAAAG ctctccaacg 321 1.000000 10-1 721 aATTCTCCTT TATAAAAG taagacccgg 728 1.000000 11-1 606 attgcactct TGGAAAAA taAAAATAAa 613 1.000000 12-1 635 tattcaaatt ATTAAAAG aaaataaaac 642 1.000000 13-1 366 cgtttcaaaa TGAAACAA acgccgttGT 373 1.000000 14-1 720 taacatgtaa AGCAAAAA actagaacac 727 1.000000 15-1 169 gtctcaaaat AGCAAAAA acgcaaaaag 176 1.000000 16-1 122 cgaaatttga AGCAAAAA ggaaaatcca 129 1.000000 17-1 136 caggcccaca AGAAACAA acgaatcttt 143 1.000000 18-1 484 cgctgtaggt TATAATAA ggaatttaaa 491 1.000000 19-1 193 tatgggggcc AGCAACAG gctaatgagt 200 1.000000 20-1 732 CAAaaacaaa AACAAAAA caggctaagc 739 1.000000 21-1 192 tacacgaagc TGCAACAG ccgttcgtac 199 1.000000 22-1 747 tcaagtcagt AACAACAA atacccatcg 754 1.000000 23-1 26 tatatattat ATAAAATA tgaatcatac 33 1.000000 24-1 447 aaaacaacac TGAAACAA acttattgca 454 1.000000 25-1 280 taatgcaaac TGAACATA taagcctcac 287 1.000000 26-1 63 tcctatatat TATATAAA atatggatta 70 1.000000 27-1 243 TTACAGaggc TGGAACAG aagtcaaatg 250 1.000000 28-1 150 atcgaaattc TGGAAAAA tccctTAATA 157 1.000000 29-1 248 caaAAAAAAA AAAAAAAA aaaaaAAAAA 255 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 790 797 793 -w 1.000000 >2 585 592 588 -w 1.000000 >3 763 770 766 -w 1.000000 >4 660 667 663 -w 1.000000 >5 785 792 788 -w 1.000000 >6 37 44 40 -w 1.000000 >7 144 151 147 -w 1.000000 >8 553 560 556 -w 1.000000 >9 314 321 317 -w 1.000000 >10 721 728 724 -w 1.000000 >11 606 613 609 -w 1.000000 >12 635 642 638 -w 1.000000 >13 366 373 369 -w 1.000000 >14 720 727 723 -w 1.000000 >15 169 176 172 -w 1.000000 >16 122 129 125 -w 1.000000 >17 136 143 139 -w 1.000000 >18 484 491 487 -w 1.000000 >19 193 200 196 -w 1.000000 >20 732 739 735 -w 1.000000 >21 192 199 195 -w 1.000000 >22 747 754 750 -w 1.000000 >23 26 33 29 -w 1.000000 >24 447 454 450 -w 1.000000 >25 280 287 283 -w 1.000000 >26 63 70 66 -w 1.000000 >27 243 250 246 -w 1.000000 >28 150 157 153 -w 1.000000 >29 248 255 251 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 53 . . 44 0.5 2 . . 58 . 0.7 4 94 . . . 1.3 5 81 . . . 0.8 6 66 27 . . 0.6 7 87 . . . 1.0 8 69 . 24 . 0.7 non- site 31 . . . site 72 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 4 . . 2 5 2 . . 10 . 7 4 15 . . . 13 5 11 . . . 8 6 7 1 . . 6 7 13 . . . 10 8 8 . 1 . 7 site 9 . . . 6 Weighted motif model: POS A C G T Prob 1 0.529859 0.017586 0.016920 0.435635 0.502825 2 0.310423 0.017586 0.581183 0.090807 0.732248 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.811991 0.048934 0.016920 0.122155 0.804209 6 0.655251 0.268370 0.016920 0.059459 0.630629 7 0.874687 0.017586 0.016920 0.090807 1.024164 8 0.686599 0.017586 0.236356 0.059459 0.663021 Conservedness in bits: 5.631629 Conservedness in prob: 9.091500 Concensus sequence: AGAAAAA Complete log-likelihood ratio = 213 bits Missing position information = 166 bits Log-likelihood ratio statistic = 47 bits Degrees of freedom = 21 Information per parameter = 2.27 bits MOTIF D 1-1 444 atgtgacgca CTTCTGAA acagTATTGA 451 1.000000 2-1 572 tgaagagtcc TGTGGAAT tgccgTACAA 579 1.000000 3-1 73 aagcgcggaa TCTCGGAT ctaaactaat 80 1.000000 4-1 145 agaattgcat TTTGTAAT aacaactgca 152 1.000000 5-1 721 aaatgttttt TATCTCAG gttcttgctt 728 1.000000 6-1 608 ttctgcattc TCTCAGAT tttagatgat 615 1.000000 7-1 246 tcacatttta CTTCAGAA agataaaaga 253 1.000000 8-1 576 actgtattat TTTTTGAT atccacacgt 583 1.000000 9-1 377 cgtttagctc CTTGTCAA attcttccgt 384 1.000000 10-1 69 tgcagcacat CAGCTGCT ttgctgcact 76 1.000000 11-1 709 tacgatttaa TCTCGGAG tagttaagcc 716 1.000000 12-1 463 gacccggtcg TTTCAGAA tgcaacTTTC 470 1.000000 13-1 344 cagcatttct TTTCGGAG agctcgtttc 351 1.000000 14-1 477 aatttcaact TCTGGGAA taatatttat 484 1.000000 15-1 282 GTTTTTataa TTTTGGCG ttcagcaagc 289 1.000000 16-1 583 agattacatt TGTCGGAG ctataaTTCC 590 1.000000 17-1 595 gtaacataat TTTCTGAA acaatattaa 602 1.000000 18-1 136 cgaattgtgt TCTCTGCT aaatattatt 143 1.000000 19-1 786 agccatcaag TTTCTGAA aatcaaa 793 1.000000 20-1 630 gttgtacata TATCTGCT tttTTTCCCT 637 1.000000 21-1 81 cgggtgagag TTTCCGAT cacgtggtct 88 1.000000 22-1 289 cctggctaac TCTCCAAT tggaaataag 296 1.000000 23-1 64 aagcgcggaa TCTCGGAT ctaaactaat 71 1.000000 24-1 419 cgtacggcgt TGTCAAAA cctcgaacat 426 1.000000 25-1 490 gtaataccat TTACTGAT caagaatgtc 497 1.000000 26-1 104 aagcgcggaa TCTCGGAT ctaaactaat 111 1.000000 27-1 231 AGACtacttt TCTTACAG aggcTGGAAC 238 1.000000 28-1 349 ttacaaggtc TATCTGAT aagcaattgc 356 1.000000 29-1 666 ttttacccac TCTCACAT aatcacctaa 673 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 444 451 447 -w 1.000000 >2 572 579 575 -w 1.000000 >3 73 80 76 -w 1.000000 >4 145 152 148 -w 1.000000 >5 721 728 724 -w 1.000000 >6 608 615 611 -w 1.000000 >7 246 253 249 -w 1.000000 >8 576 583 579 -w 1.000000 >9 377 384 380 -w 1.000000 >10 69 76 72 -w 1.000000 >11 709 716 712 -w 1.000000 >12 463 470 466 -w 1.000000 >13 344 351 347 -w 1.000000 >14 477 484 480 -w 1.000000 >15 282 289 285 -w 1.000000 >16 583 590 586 -w 1.000000 >17 595 602 598 -w 1.000000 >18 136 143 139 -w 1.000000 >19 786 793 789 -w 1.000000 >20 630 637 633 -w 1.000000 >21 81 88 84 -w 1.000000 >22 289 296 292 -w 1.000000 >23 64 71 67 -w 1.000000 >24 419 426 422 -w 1.000000 >25 490 497 493 -w 1.000000 >26 104 111 107 -w 1.000000 >27 231 238 234 -w 1.000000 >28 349 356 352 -w 1.000000 >29 666 673 669 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.9 2 . 33 . 40 0.2 3 . . . 87 1.0 4 . 71 . . 1.0 6 . . 68 . 0.9 7 81 . . . 0.9 8 . . . 50 0.3 non- site . . . 30 site . . . 40 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 9 2 . 3 . 2 2 3 . . . 13 10 4 . 13 . . 10 6 . . 13 . 9 7 11 . . . 9 8 . . . 3 3 site . . . 2 1 Weighted motif model: POS A C G T Prob 1 0.028292 0.142978 0.016920 0.811810 0.911671 2 0.153683 0.331066 0.110964 0.404287 0.173749 3 0.059639 0.017586 0.048268 0.874506 1.014625 4 0.028292 0.707241 0.142312 0.122155 1.006068 6 0.153683 0.142978 0.675227 0.028111 0.939293 7 0.811991 0.142978 0.016920 0.028111 0.905318 8 0.279075 0.017586 0.205008 0.498331 0.266948 Conservedness in bits: 5.217671 Conservedness in prob: 9.468905 Concensus sequence: TCTCGAT Complete log-likelihood ratio = 195 bits Missing position information = 151 bits Log-likelihood ratio statistic = 43 bits Degrees of freedom = 21 Information per parameter = 2.09 bits MOTIF E 1-1 562 tatatcgcct TTCGCTCTT ttgtatgtag 570 1.000000 2-1 215 gcaaccacca TTTTTTTTT gctccaaagg 223 1.000000 3-1 177 ggttgtttca TATGTGTTT tatgaacgtt 185 1.000000 4-1 384 aattcattac CTCCTATTT cctctgcagc 392 1.000000 5-1 328 ttactggtgc TTCCTCTTT gggatgataa 336 1.000000 6-1 164 tatttagagg TTATTTTTT gaccttggtt 172 1.000000 7-1 19 ttacaacgta TATATAGTT tctgagaggc 27 1.000000 8-1 444 gtttaccatt TTTGTTCTT atttactctc 452 1.000000 9-1 476 gcactcactt TTCCTTTTT cgctgcctct 484 1.000000 10-1 712 tcactttata ATTCTCCTT TATAAAAGta 720 1.000000 11-1 684 cgttgatagc TTCTTGTTT taacaatacg 692 1.000000 12-1 477 AGAAtgcaac TTTCTTTTG tttgcatatc 485 1.000000 13-1 576 gtaccactac GTTCCTTTT acaattagat 584 1.000000 14-1 194 atctttttag ATCCTTTTG aatcttccaa 202 1.000000 15-1 269 acctgcaaag TTTGTTTTT ataaTTTTGG 277 1.000000 16-1 207 aagaagcagc CTTCTCAAT gcaaaagcTT 215 1.000000 17-1 72 gcacgtgaat TGGATCTTG agttgcaaaa 80 1.000000 18-1 194 gatagcacct TACCTATTT ttatcaaaaa 202 1.000000 19-1 602 ctgtctcatt TTGGTGCGA tgatgaaaca 610 1.000000 20-1 473 ggtgtttgga GACGTATTT taacccccat 481 1.000000 21-1 630 gctggccatt CTTGTATGT gtgtatgtgt 638 1.000000 22-1 235 ttatccaagt CGTATATTT ttctttatac 243 1.000000 23-1 664 acgttttttt TTTTTTTTT aaaggcattg 672 1.000000 24-1 344 ttttgccttg TCCTTCTTT gtttcaagcg 352 1.000000 25-1 401 tgcagttttt TACATCTTT gagactcttt 409 1.000000 26-1 251 atgatgtatt GTCATACTG agggatctca 259 1.000000 27-1 735 TTCTtcttct CTCTTCTTT ccttcctcga 743 1.000000 28-1 317 ctacaccgaa TTTGTCTTT actcctatgc 325 1.000000 29-1 494 TTGTTTtatt CTTTTCTTT ccttcaaggt 502 1.000000 sites: *** * *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 562 570 566 -w 1.000000 >2 215 223 219 -w 1.000000 >3 177 185 181 -w 1.000000 >4 384 392 388 -w 1.000000 >5 328 336 332 -w 1.000000 >6 164 172 168 -w 1.000000 >7 19 27 23 -w 1.000000 >8 444 452 448 -w 1.000000 >9 476 484 480 -w 1.000000 >10 712 720 716 -w 1.000000 >11 684 692 688 -w 1.000000 >12 477 485 481 -w 1.000000 >13 576 584 580 -w 1.000000 >14 194 202 198 -w 1.000000 >15 269 277 273 -w 1.000000 >16 207 215 211 -w 1.000000 >17 72 80 76 -w 1.000000 >18 194 202 198 -w 1.000000 >19 602 610 606 -w 1.000000 >20 473 481 477 -w 1.000000 >21 630 638 634 -w 1.000000 >22 235 243 239 -w 1.000000 >23 664 672 668 -w 1.000000 >24 344 352 348 -w 1.000000 >25 401 409 405 -w 1.000000 >26 251 259 255 -w 1.000000 >27 735 743 739 -w 1.000000 >28 317 325 321 -w 1.000000 >29 494 502 498 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 59 0.3 2 . . . 69 0.5 3 . 39 . 47 0.4 5 . . . 87 1.1 7 . . . 72 0.6 8 . . . 84 0.9 9 . . . 78 0.8 non- site . . . 30 site . . . 74 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 6 3 2 . . . 8 5 3 . 4 . 3 4 5 . . . 13 11 7 . . . 9 6 8 . . . 12 9 9 . . . 10 8 site . . . 10 6 Weighted motif model: POS A C G T Prob 1 0.090987 0.205674 0.110964 0.592375 0.329527 2 0.185031 0.048934 0.079616 0.686418 0.456311 3 0.059639 0.393762 0.079616 0.466983 0.441785 5 0.028292 0.080282 0.016920 0.874506 1.053330 7 0.059639 0.174326 0.048268 0.717766 0.609675 8 0.059639 0.017586 0.079616 0.843158 0.919648 9 0.059639 0.017586 0.142312 0.780462 0.784353 Conservedness in bits: 4.594629 Conservedness in prob: 8.611172 Concensus sequence: TTCTTTT Complete log-likelihood ratio = 170 bits Missing position information = 148 bits Log-likelihood ratio statistic = 21 bits Degrees of freedom = 21 Information per parameter = 1.03 bits MOTIF F 1-1 678 caagtgaggc TTGAGTTTA cgTTTGTTTt 686 1.000000 2-1 341 attgagcgaa AGTAGCGTA agtctcAAAA 349 1.000000 3-1 43 atataaaata TGAATCATA ctaagtggtg 51 1.000000 4-1 556 gaggcttttg TACAATTTA tagcaagttt 564 1.000000 5-1 160 ctaaccaaat GTTGACAGC aatggctcaa 168 1.000000 6-1 245 actagaggaa AGAAGGCTT aaaacatcac 253 1.000000 7-1 189 agttccaggg TGAAACAGA tctaaaactc 197 1.000000 8-1 75 ctatgctgtt ATTAACTTC tacatccatc 83 1.000000 9-1 763 attatccaga TAGGCCATA ttaggtgtta 771 1.000000 10-1 114 tcattacaac GAGAATATT taggaatttt 122 1.000000 11-1 238 attggtttat TGGATAAGT tcatatccta 246 1.000000 12-1 236 atgactgtaa CTAAAATTC aatgggacat 244 1.000000 13-1 427 taaaaattgt TTTAAAAGA aacgaatttg 435 1.000000 14-1 676 gcccagtaat AAAACATTT acatatgcta 684 1.000000 15-1 554 tgtttggtgg AACAATTGT gaaacgtgat 562 1.000000 16-1 427 taaaacaggc TTGACATTA tattggccat 435 1.000000 17-1 183 ctaccaaagg AATAAGATC aattcgatat 191 1.000000 18-1 523 cgagaaatat TTGAATTGC actgaacgag 531 1.000000 19-1 765 ttcctttaag AGCAGGATA taagccatca 773 1.000000 20-1 757 agccgattca ATTAAAACC gctcatacgt 765 1.000000 21-1 423 atgtatttgt TGCTGCAGA gcggtgcgct 431 1.000000 22-1 85 ctcctcaaca GAAAACCGT gctcgcgttg 93 1.000000 23-1 549 ggatttgata TGTAGGCGA tgttttgggt 557 1.000000 24-1 317 TTCCCTTtca GTAAAATGA acaaattatt 325 1.000000 25-1 306 accaatgcgg TGAAGAAGA tATTTGGCAA 314 1.000000 26-1 311 gtacgttaat AAGTATTTA aaagaaaaga 319 1.000000 27-1 428 atttgataca AGTAAATAC atgcaggaaa 436 1.000000 28-1 645 tcaatactgt TTCAGAAGT gcgtcacata 653 1.000000 29-1 261 AAAAAaaaaa AAAAATGTT ctcaaagtgt 269 1.000000 sites: ** ** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 678 686 682 -w 1.000000 >2 341 349 345 -w 1.000000 >3 43 51 47 -w 1.000000 >4 556 564 560 -w 1.000000 >5 160 168 164 -w 1.000000 >6 245 253 249 -w 1.000000 >7 189 197 193 -w 1.000000 >8 75 83 79 -w 1.000000 >9 763 771 767 -w 1.000000 >10 114 122 118 -w 1.000000 >11 238 246 242 -w 1.000000 >12 236 244 240 -w 1.000000 >13 427 435 431 -w 1.000000 >14 676 684 680 -w 1.000000 >15 554 562 558 -w 1.000000 >16 427 435 431 -w 1.000000 >17 183 191 187 -w 1.000000 >18 523 531 527 -w 1.000000 >19 765 773 769 -w 1.000000 >20 757 765 761 -w 1.000000 >21 423 431 427 -w 1.000000 >22 85 93 89 -w 1.000000 >23 549 557 553 -w 1.000000 >24 317 325 321 -w 1.000000 >25 306 314 310 -w 1.000000 >26 311 319 315 -w 1.000000 >27 428 436 432 -w 1.000000 >28 645 653 649 -w 1.000000 >29 261 269 265 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 37 . . 44 0.2 2 . . 33 . 0.3 4 81 . . . 0.8 5 53 . 27 . 0.3 7 44 . . 37 0.1 8 . . 39 50 0.5 9 47 24 . . 0.2 non- site 31 . . . site 43 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 1 . . 2 2 2 . . 3 . 3 4 11 . . . 8 5 4 . 1 . 3 7 2 . . 1 1 8 . . 4 3 5 9 3 1 . . 2 site 2 . . . 1 Weighted motif model: POS A C G T Prob 1 0.373119 0.048934 0.142312 0.435635 0.160936 2 0.310423 0.017586 0.330400 0.341591 0.260653 4 0.811991 0.017586 0.079616 0.090807 0.804558 5 0.529859 0.111630 0.267704 0.090807 0.298100 7 0.435815 0.111630 0.079616 0.372939 0.126452 8 0.059639 0.048934 0.393096 0.498331 0.527895 9 0.467163 0.237022 0.016920 0.278895 0.243177 Conservedness in bits: 2.421771 Conservedness in prob: 5.624299 Concensus sequence: TGAAAGA Complete log-likelihood ratio = 90 bits Missing position information = 84 bits Log-likelihood ratio statistic = 6 bits Degrees of freedom = 21 Information per parameter = 0.292 bits MOTIF G 1-1 689 TGAGTTTAcg TTTGTTT ttaataatca 695 1.000000 2-1 726 tatgtgttgt TTTTATT tcgagtaaat 732 1.000000 3-1 152 tctcatgttg TTCGTTT tgttataagg 158 1.000000 4-1 652 TTGGTTTTta TTTTTTT aAGCAACATc 658 1.000000 5-1 531 taaaactttt TTTTTTT gaaagtcctt 537 1.000000 6-1 188 tggtttttcc TTCTTTT cgccgtactc 194 1.000000 7-1 678 tttaaagcaa TTCCTTT ccggtttTTT 684 1.000000 8-1 290 gtgcggttga TTCGTTT tatacaactt 296 1.000000 9-1 508 tcccatgcat TTCCTTT ttgagtagta 514 1.000000 10-1 456 tgcaggtgga TTTTTTT ggcagatact 462 1.000000 11-1 34 attattactt CTTCTTT gttttatgtg 40 1.000000 12-1 71 ctccaactcc TTTATTT gctagtgcgg 77 1.000000 13-1 598 attagattac TTCTTTT tagttgactt 604 1.000000 14-1 167 cttatacttt TTTCTTT actactttag 173 1.000000 15-1 660 ctgttgatgg ATTGTTT cgtgtctggT 666 1.000000 16-1 597 GGAGctataa TTCCATT acggcaaaac 603 1.000000 17-1 221 ttcttttctt TTCTTTT cctttTTTTA 227 1.000000 18-1 559 acgcccataa ATCGTCT atattAAAAA 565 1.000000 19-1 404 Tgtttacgta TTTGTTT atatatataa 410 1.000000 20-1 454 gctctgagtc TTTCTTT acggtgtttg 460 1.000000 21-1 692 ttagcctgtt TTTGTTT ttgtttttgt 698 1.000000 22-1 500 gcggaatatc TTTGTTT actcattaaa 506 1.000000 23-1 143 tctcatgttg TTCGTTT tgttataagg 149 1.000000 24-1 307 ttcacgagcc TTCCCTT tcaGTAAAAT 313 1.000000 25-1 706 gtagcaatgg TTCTTCT ataaaagtgc 712 1.000000 26-1 719 tcaagaatat TTCGTTT atcatatcca 725 1.000000 27-1 722 tatacatttc TTCTTCT tcttctCTCT 728 1.000000 28-1 547 gcgatataaa TTTTTTT cacgggattt 553 1.000000 29-1 326 tctcatcggt TTCGTTT gttgcttaaa 332 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 689 695 692 -w 1.000000 >2 726 732 729 -w 1.000000 >3 152 158 155 -w 1.000000 >4 652 658 655 -w 1.000000 >5 531 537 534 -w 1.000000 >6 188 194 191 -w 1.000000 >7 678 684 681 -w 1.000000 >8 290 296 293 -w 1.000000 >9 508 514 511 -w 1.000000 >10 456 462 459 -w 1.000000 >11 34 40 37 -w 1.000000 >12 71 77 74 -w 1.000000 >13 598 604 601 -w 1.000000 >14 167 173 170 -w 1.000000 >15 660 666 663 -w 1.000000 >16 597 603 600 -w 1.000000 >17 221 227 224 -w 1.000000 >18 559 565 562 -w 1.000000 >19 404 410 407 -w 1.000000 >20 454 460 457 -w 1.000000 >21 692 698 695 -w 1.000000 >22 500 506 503 -w 1.000000 >23 143 149 146 -w 1.000000 >24 307 313 310 -w 1.000000 >25 706 712 709 -w 1.000000 >26 719 725 722 -w 1.000000 >27 722 728 725 -w 1.000000 >28 547 553 550 -w 1.000000 >29 326 332 329 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 84 0.9 2 . . . 94 1.3 3 . 49 . 47 0.8 4 . 24 36 . 0.3 5 . . . 84 0.9 6 . . . 84 1.0 7 . . . 94 1.3 non- site . . . 30 site . . . 78 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 12 9 2 . . . 15 13 3 . 7 . 3 8 4 . 1 3 . 3 5 . . . 12 9 6 . . . 12 10 7 . . . 15 13 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.090987 0.048934 0.016920 0.843158 0.903181 2 0.028292 0.017586 0.016920 0.937202 1.282005 3 0.028292 0.487806 0.016920 0.466983 0.772223 4 0.059639 0.237022 0.361748 0.341591 0.323194 5 0.090987 0.048934 0.016920 0.843158 0.903181 6 0.028292 0.111630 0.016920 0.843158 0.975223 7 0.028292 0.017586 0.016920 0.937202 1.282005 Conservedness in bits: 6.441012 Conservedness in prob: 9.833970 Concensus sequence: TTCGTTT Complete log-likelihood ratio = 245 bits Missing position information = 170 bits Log-likelihood ratio statistic = 74 bits Degrees of freedom = 21 Information per parameter = 3.54 bits MOTIF H 1-1 187 atggatttgg AGAAAAA cagaagcttc 193 1.000000 2-1 356 CGTAagtctc AAAAAAA aattgggtta 362 1.000000 3-1 596 acttgtaaat AGAAAAA tgatgttcta 602 1.000000 4-1 634 AGAGcaaagt AGAAAAA TTTGGTTTTt 640 1.000000 5-1 794 aAAAAAAAAa AAAAAAA 800 1.000000 6-1 780 aataaggcag AGAAAAA gaaaggaaaa 786 1.000000 7-1 623 aagaagcaca AAAAAAG gaggcgagta 629 1.000000 8-1 510 agctcgtatc AAAATAA aactagtcag 516 1.000000 9-1 716 taggaacaaa AGAAAAA gaaaactgga 722 1.000000 10-1 345 gatatcgcat AAAAAAA tggccagcta 351 1.000000 11-1 616 TGGAAAAAta AAAATAA aaagtggtct 622 1.000000 12-1 317 cagGATGAAA AAAAAAA gacattgcac 323 1.000000 13-1 400 Tcgtctcaat AGAAAAA gtgaaacaga 406 1.000000 14-1 332 gtgataactc AAAAAAC aagagtacaa 338 1.000000 15-1 326 ttaatattcc AGAAAAA gaaattcctt 332 1.000000 16-1 177 cgcaccagtc AAAAAAG acaagtttaa 183 1.000000 17-1 781 ataaaagcta AAAAAAC caaaaaattt 787 1.000000 18-1 571 CGTCTatatt AAAAAAA aggcagcata 577 1.000000 19-1 31 caacaaggcc AAAACAA ccagcagcaa 37 1.000000 20-1 718 aaaccaaaac AAAACAA aaacaaaAAC 724 1.000000 21-1 786 gtaaaaaggg AAAAAAA gcagatat 792 1.000000 22-1 661 caaaaagcat ATAAAAA gcttcatatt 667 1.000000 23-1 432 aaaaaaatca AGAAAAA aacctgatta 438 1.000000 24-1 17 gcaactccag AGAAAAA gccaaaggaa 23 1.000000 25-1 680 gaatgtaaac AAAAAAA actgtctagg 686 1.000000 26-1 550 ccacaccttt AAAAAAA accaagaacg 556 1.000000 27-1 63 gaaaagtcac AAAAAAC ccccggggga 69 1.000000 28-1 399 actgattatt AAAAACA aacgtaaact 405 1.000000 29-1 241 aaccggccaa AAAAAAA AAAAAAAAaa 247 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 187 193 190 -w 1.000000 >2 356 362 359 -w 1.000000 >3 596 602 599 -w 1.000000 >4 634 640 637 -w 1.000000 >5 794 800 797 -w 1.000000 >6 780 786 783 -w 1.000000 >7 623 629 626 -w 1.000000 >8 510 516 513 -w 1.000000 >9 716 722 719 -w 1.000000 >10 345 351 348 -w 1.000000 >11 616 622 619 -w 1.000000 >12 317 323 320 -w 1.000000 >13 400 406 403 -w 1.000000 >14 332 338 335 -w 1.000000 >15 326 332 329 -w 1.000000 >16 177 183 180 -w 1.000000 >17 781 787 784 -w 1.000000 >18 571 577 574 -w 1.000000 >19 31 37 34 -w 1.000000 >20 718 724 721 -w 1.000000 >21 786 792 789 -w 1.000000 >22 661 667 664 -w 1.000000 >23 432 438 435 -w 1.000000 >24 17 23 20 -w 1.000000 >25 680 686 683 -w 1.000000 >26 550 556 553 -w 1.000000 >27 63 69 66 -w 1.000000 >28 399 405 402 -w 1.000000 >29 241 247 244 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 94 . . . 1.3 2 62 . 30 . 0.6 3 94 . . . 1.3 4 94 . . . 1.3 5 81 . . . 0.8 6 91 . . . 1.1 7 78 . . . 0.8 non- site 31 . . . site 90 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 15 . . . 13 2 6 . 2 . 6 3 15 . . . 13 4 15 . . . 13 5 11 . . . 8 6 14 . . . 11 7 10 . . . 8 site 14 . . . 11 Weighted motif model: POS A C G T Prob 1 0.937382 0.017586 0.016920 0.028111 1.274533 2 0.623903 0.017586 0.299052 0.059459 0.628379 3 0.937382 0.017586 0.016920 0.028111 1.274533 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.811991 0.080282 0.016920 0.090807 0.802539 6 0.906034 0.048934 0.016920 0.028111 1.144005 7 0.780643 0.111630 0.079616 0.028111 0.752413 Conservedness in bits: 7.150934 Conservedness in prob: 10.027808 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 273 bits Missing position information = 191 bits Log-likelihood ratio statistic = 81 bits Degrees of freedom = 21 Information per parameter = 3.9 bits MOTIF I 1-1 456 TCTGAAacag TATTGAAACAG tattgaaaca 466 1.000000 2-1 646 gcccacaaat AACTGCAACAG cgcctacaat 656 1.000000 3-1 752 catccacttt CGGTTCAATAG TGCAAAAAta 762 1.000000 4-1 617 tctttgtgca ACGTACAAGAG caaagtAGAA 627 1.000000 5-1 118 cggacgcaaa CGTTCCAAGAG atttgtttga 128 1.000000 6-1 309 tgactacttg ACGTTCAAAAG aacatacata 319 1.000000 7-1 778 aagccctgaa GTGTCCAGTAG tcatcacacg 788 1.000000 8-1 324 agctttacac TTTTCCAAGAA tagtaattgc 334 1.000000 9-1 157 atgttcagcc CTATATAAGAA tttactctaa 167 1.000000 10-1 754 aacaacctga TCCGACAAGAG caatttcaat 764 1.000000 11-1 203 ctttgattcc TATTCCAATAA agttaaactg 213 1.000000 12-1 500 catatctttt TTTTTCAGCGA tgcaattttc 510 1.000000 13-1 233 ctgaagaact TCGTTCAGTAA tcactttcaa 243 1.000000 14-1 34 cggtatctta TTATTCAAGAT ctttgatgtg 44 1.000000 15-1 111 aacgccccag TCGTACAAAAG cacctctgca 121 1.000000 16-1 224 ATgcaaaagc TTCTGAAAAAG agaaaagtga 234 1.000000 17-1 233 CTTTTccttt TTTTACAATAG ctaatttacg 243 1.000000 18-1 767 atacatattc TGGTTCAACAA ctgtttctat 777 1.000000 19-1 76 aactatcagc ATCAACAACAG ggtcaGCAGC 86 1.000000 20-1 113 tcaatacggt GATTGCTATAG atttccctac 123 1.000000 21-1 285 tttaccacgc TGTTGCAGCAG cgagtccagc 295 1.000000 22-1 390 aatagtttaa TTTTCCAAAAA ggttcctgtg 400 1.000000 23-1 105 atactttggg TAGTTCAGCTA gggaaggtcg 115 1.000000 24-1 66 atgattacga TGCTGCAGAAG ataacgaact 76 1.000000 25-1 550 ATTttgtgtt TTTTACAACAA cctctcgact 560 1.000000 26-1 480 aggctgaagc GTTTAAAATAG agaatcagga 490 1.000000 27-1 391 gttgcgcata TGCTACAAGAA cccttggtga 401 1.000000 28-1 163 AAAAAtccct TAATAAAATAA tcgggcctta 173 1.000000 29-1 8 agtgtac AAATCAAGAAA catagtcctg 18 1.000000 sites: * * *** ** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 456 466 461 -w 1.000000 >2 646 656 651 -w 1.000000 >3 752 762 757 -w 1.000000 >4 617 627 622 -w 1.000000 >5 118 128 123 -w 1.000000 >6 309 319 314 -w 1.000000 >7 778 788 783 -w 1.000000 >8 324 334 329 -w 1.000000 >9 157 167 162 -w 1.000000 >10 754 764 759 -w 1.000000 >11 203 213 208 -w 1.000000 >12 500 510 505 -w 1.000000 >13 233 243 238 -w 1.000000 >14 34 44 39 -w 1.000000 >15 111 121 116 -w 1.000000 >16 224 234 229 -w 1.000000 >17 233 243 238 -w 1.000000 >18 767 777 772 -w 1.000000 >19 76 86 81 -w 1.000000 >20 113 123 118 -w 1.000000 >21 285 295 290 -w 1.000000 >22 390 400 395 -w 1.000000 >23 105 115 110 -w 1.000000 >24 66 76 71 -w 1.000000 >25 550 560 555 -w 1.000000 >26 480 490 485 -w 1.000000 >27 391 401 396 -w 1.000000 >28 163 173 168 -w 1.000000 >29 8 18 13 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 59 0.2 4 . . . 87 1.0 6 . 74 . . 1.1 7 91 . . . 1.1 8 72 . 24 . 0.8 10 87 . . . 1.0 11 40 . 52 . 0.7 non- site 31 . . . site 49 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 6 2 4 . . . 13 10 6 . 14 . . 11 7 14 . . . 11 8 9 . 1 . 8 10 13 . . . 10 11 2 . 8 . 7 site 3 . . . 1 Weighted motif model: POS A C G T Prob 1 0.185031 0.111630 0.110964 0.592375 0.245427 4 0.059639 0.017586 0.048268 0.874506 1.014625 6 0.185031 0.738589 0.016920 0.059459 1.088803 7 0.906034 0.017586 0.016920 0.059459 1.136019 8 0.717947 0.017586 0.236356 0.028111 0.789235 10 0.874687 0.017586 0.048268 0.059459 1.007808 11 0.404467 0.017586 0.518487 0.059459 0.717037 Conservedness in bits: 5.998953 Conservedness in prob: 10.087155 Concensus sequence: TTCAAAG Complete log-likelihood ratio = 222 bits Missing position information = 172 bits Log-likelihood ratio statistic = 50 bits Degrees of freedom = 21 Information per parameter = 2.4 bits MOTIF J 1-1 709 ataatcagtt TTCATTCTACT attttcttgc 719 1.000000 2-1 69 acccggaagg TGCGGTATTTT acagggaGTG 79 1.000000 3-1 638 ctatttgaga TTTTGTCTTTT tttacctggt 648 1.000000 4-1 181 attatataga TTTTCTACTAT tatgtccgcc 191 1.000000 5-1 561 gctttaggat TTTTTCCCATT aagattatga 571 1.000000 6-1 576 ttactcgaaa TTTTTACTTTT tttttttttg 586 1.000000 7-1 692 TTTccggttt TTTTCTCAACT accgtactct 702 1.000000 8-1 631 tttaggcggc TTTTCCGTTTG gctgaagcaa 641 1.000000 9-1 532 gtacgtctta TTTTTGATTAT atgctcgaca 542 1.000000 10-1 179 Cagaatttcg TTTTGTAGTAT agtttattag 189 1.000000 11-1 409 TTTttaattt ATTTTTGTGTT gcaagcgttg 419 1.000000 12-1 404 aaggaaaaat ATCTGTTTACT ttcatttacc 414 1.000000 13-1 773 aaccgctttc TTTATTTGAAT tgtcttgttc 783 1.000000 14-1 541 cttatcttaa TTTTCGCCAAT aggtttggaa 551 1.000000 15-1 350 cttctttggg TGTTGTGTATT gctactttgg 360 1.000000 16-1 638 tatattggct ATCTCTAGTAT aaattgttgt 648 1.000000 17-1 300 atttataaat ATCTTAATTTT aacagcagtt 310 1.000000 18-1 716 tcctgaacaa ATTTTCTATAT ataaacactg 726 1.000000 19-1 384 tcagttcgcc TTCTATCCTTT gtttacgtaT 394 1.000000 20-1 641 ATCTGCTttt TTTCCCTTTTT acgcggaaag 651 1.000000 21-1 761 cttcgaggaa ATTTGCGCTTT ccgcgtaaaa 771 1.000000 22-1 463 tgcagactgc TTAGGGGGTCT cttgttgtta 473 1.000000 23-1 376 attaacaggg TATTTTTTTTT tcacttctac 386 1.000000 24-1 512 cataatgctg TTTTAGAATCG catcaggtgt 522 1.000000 25-1 316 TGAAGAAGAt ATTTGGCAAAT ttggactaaa 326 1.000000 26-1 750 ccggtgtgta TGCATTGATAT tcccattagg 760 1.000000 27-1 88 gagcgcatac TTTAAACATAT tgatgaaaaa 98 1.000000 28-1 668 cacatattaa TTTTAACTTAT aactggcctg 678 1.000000 29-1 715 cagtcaaaaa TTTACTCTTTT ggcaactgtt 725 1.000000 sites: **** *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 709 719 714 -w 1.000000 >2 69 79 74 -w 1.000000 >3 638 648 643 -w 1.000000 >4 181 191 186 -w 1.000000 >5 561 571 566 -w 1.000000 >6 576 586 581 -w 1.000000 >7 692 702 697 -w 1.000000 >8 631 641 636 -w 1.000000 >9 532 542 537 -w 1.000000 >10 179 189 184 -w 1.000000 >11 409 419 414 -w 1.000000 >12 404 414 409 -w 1.000000 >13 773 783 778 -w 1.000000 >14 541 551 546 -w 1.000000 >15 350 360 355 -w 1.000000 >16 638 648 643 -w 1.000000 >17 300 310 305 -w 1.000000 >18 716 726 721 -w 1.000000 >19 384 394 389 -w 1.000000 >20 641 651 646 -w 1.000000 >21 761 771 766 -w 1.000000 >22 463 473 468 -w 1.000000 >23 376 386 381 -w 1.000000 >24 512 522 517 -w 1.000000 >25 316 326 321 -w 1.000000 >26 750 760 755 -w 1.000000 >27 88 98 93 -w 1.000000 >28 668 678 673 -w 1.000000 >29 715 725 720 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 72 0.7 2 . . . 81 0.8 3 . 24 . 69 0.7 4 . . . 69 0.5 9 . . . 66 0.5 10 37 . . 44 0.2 11 . . . 87 1.1 non- site . . . 30 site . . . 73 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 9 7 2 . . . 11 8 3 . 1 . 8 7 4 . . . 8 5 9 . . . 7 5 10 1 . . 2 2 11 . . . 13 11 site . . . 9 6 Weighted motif model: POS A C G T Prob 1 0.247727 0.017586 0.016920 0.717766 0.671082 2 0.059639 0.017586 0.110964 0.811810 0.844651 3 0.059639 0.237022 0.016920 0.686418 0.658458 4 0.185031 0.048934 0.079616 0.686418 0.456311 9 0.279075 0.017586 0.048268 0.655071 0.510743 10 0.373119 0.174326 0.016920 0.435635 0.228365 11 0.028292 0.017586 0.079616 0.874506 1.055349 Conservedness in bits: 4.424959 Conservedness in prob: 7.985502 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 167 bits Missing position information = 122 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.18 bits seed 7 time: 21 seconds (0.35 minutes) MOTIF A 1-1 757 agaccttgta AACAGCA taggagtaaA 763 1.000000 2-1 506 cgtttgcata AAATTAC tacccaattt 512 1.000000 3-1 686 cggatgcaag AAAAGGA gaagggcgca 692 1.000000 4-1 137 ctatctcaag AATTGCA ttttgtaata 143 1.000000 5-1 793 aaaaaaaaaa AAAAAAA a 799 1.000000 6-1 238 GCactaaact AGAGGAA agaaggctta 244 1.000000 7-1 580 acctctaaat AACAGCA tgatgcaaca 586 1.000000 8-1 693 gcgcctaaat AAGTGAA ttttgtgcca 699 1.000000 9-1 719 gaacaaaaga AAAAGAA aactggaaaa 725 1.000000 10-1 538 gcaaattggg AAGAGAT ctattgttcc 544 1.000000 11-1 452 ATgcagccat AAGAGGA ggctggatat 458 1.000000 12-1 552 aaatacctaa AAAGGAA ataggcaata 558 1.000000 13-1 430 AAAttgtttt AAAAGAA acgaatttgc 436 1.000000 14-1 628 gtacggttat AACAGCA cattattgaa 634 1.000000 15-1 182 AAAAaacgca AAAAGCA taccgctggg 188 1.000000 16-1 611 ATTacggcaa AACAGAA ctgaaacaag 617 1.000000 17-1 417 gtagctgtct AACAGCA ccacttagca 423 1.000000 18-1 587 AAggcagcat AAGAGCA actcactgca 593 1.000000 19-1 79 tatcagcatc AACAACA gggtcagCAG 85 1.000000 20-1 145 taccagtcgc CACGGAA caccgcactc 151 1.000000 21-1 2 a AAATGCC gcgaggtcgc 8 1.000000 22-1 653 cacacttgca AAAAGCA tATAAAAAgc 659 1.000000 23-1 673 TTtttttttt AAAGGCA ttgtcatcaa 679 1.000000 24-1 394 attatttttc AACAGAC ggtgtgcccg 400 1.000000 25-1 448 aaatcgtgta ATAAGCA agtatgtaac 454 1.000000 26-1 602 tgtccagcat AAAAGAA agcgagacta 608 1.000000 27-1 188 tgataaactg AAGAGGA actatatcca 194 1.000000 28-1 209 tgatagtgaa AACAGGC agccctatgc 215 1.000000 29-1 520 ggttctttgc AACAGCA ctgaaaatag 526 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 757 763 760 -w 1.000000 >2 506 512 509 -w 1.000000 >3 686 692 689 -w 1.000000 >4 137 143 140 -w 1.000000 >5 793 799 796 -w 1.000000 >6 238 244 241 -w 1.000000 >7 580 586 583 -w 1.000000 >8 693 699 696 -w 1.000000 >9 719 725 722 -w 1.000000 >10 538 544 541 -w 1.000000 >11 452 458 455 -w 1.000000 >12 552 558 555 -w 1.000000 >13 430 436 433 -w 1.000000 >14 628 634 631 -w 1.000000 >15 182 188 185 -w 1.000000 >16 611 617 614 -w 1.000000 >17 417 423 420 -w 1.000000 >18 587 593 590 -w 1.000000 >19 79 85 82 -w 1.000000 >20 145 151 148 -w 1.000000 >21 2 8 5 -w 1.000000 >22 653 659 656 -w 1.000000 >23 673 679 676 -w 1.000000 >24 394 400 397 -w 1.000000 >25 448 454 451 -w 1.000000 >26 602 608 605 -w 1.000000 >27 188 194 191 -w 1.000000 >28 209 215 212 -w 1.000000 >29 520 526 523 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 2 87 . . . 1.0 3 44 33 . . 0.3 4 69 . . . 0.5 5 . . 83 . 1.4 6 40 43 . . 0.5 7 78 . . . 0.8 non- site 31 . . . site 62 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 2 13 . . . 10 3 2 3 . . 3 4 8 . . . 5 5 . . 18 . 14 6 2 5 . . 5 7 10 . . . 8 site 6 . . . 5 Weighted motif model: POS A C G T Prob 1 0.906034 0.048934 0.016920 0.028111 1.144005 2 0.874687 0.017586 0.048268 0.059459 1.007808 3 0.435815 0.331066 0.173660 0.059459 0.309574 4 0.686599 0.017586 0.142312 0.153503 0.512780 5 0.090987 0.017586 0.831967 0.059459 1.433592 6 0.404467 0.425110 0.142312 0.028111 0.483476 7 0.780643 0.142978 0.016920 0.059459 0.773419 Conservedness in bits: 5.664653 Conservedness in prob: 9.572311 Concensus sequence: AACAGCA Complete log-likelihood ratio = 210 bits Missing position information = 152 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.8 bits MOTIF B 1-1 655 tttcacgtac TCCGTCT gagcatcaag 661 1.000000 2-1 393 tactcctggt TCTTTCT catgaaccat 399 1.000000 3-1 480 gtagaggatc TCTGTCT tcccctgata 486 1.000000 4-1 325 catcagccta TCTTTCT atgcaagaat 331 1.000000 5-1 26 gtcttcccta TCTTTTG aaccatctga 32 1.000000 6-1 185 ccttggtttt TCCTTCT tttcgccgta 191 1.000000 7-1 483 gatgttttaa GCCTTCT ttcctctagt 489 1.000000 8-1 468 ctctctaata TGATTCT agtatatgaa 474 1.000000 9-1 509 cccatgcatt TCCTTTT tgagtagtac 515 1.000000 10-1 52 acagctcgtg TTCTTCT tgcagcacat 58 1.000000 11-1 523 aagagccaat TGCTCCA aattttggat 529 1.000000 12-1 280 tggatgattt GCCTTTT tgaagttatt 286 1.000000 13-1 578 accactacgt TCCTTTT acaattagat 584 1.000000 14-1 195 tctttttaga TCCTTTT gaatcttcca 201 1.000000 15-1 338 AAAAAgaaat TCCTTCT ttgggtgttg 344 1.000000 16-1 397 ggcgtgattt TCTGTCT aaacattgcc 403 1.000000 17-1 227 TCTTTtcttt TCCTTTT tttacaatag 233 1.000000 18-1 759 aatgaagtat ACATATT ctggttcaac 765 1.000000 19-1 479 gatgcctcaa TCCTTCT tttgcttcca 485 1.000000 20-1 567 gttcagtgct TCAAACT cagattgacc 573 1.000000 21-1 570 ctgggccacg TCCTTTT ggaacccgtc 576 1.000000 22-1 261 tactgctagt TCATTCT gagcggagat 267 1.000000 23-1 776 cagcagacac TCCTTTT tttcttcata 782 1.000000 24-1 237 cgtcatgcta TTATATT attcttacgt 243 1.000000 25-1 706 gtagcaatgg TTCTTCT atAAAAGTGC 712 1.000000 26-1 267 ctgagggatc TCATTCT gagatacaac 273 1.000000 27-1 623 tatctcgggt TCATTTT ttacgtcggt 629 1.000000 28-1 295 gctgatacca TCCTTTT attctctaca 301 1.000000 29-1 714 acagtcaaaa ATTTACT cttttggcaa 720 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 655 661 658 -w 1.000000 >2 393 399 396 -w 1.000000 >3 480 486 483 -w 1.000000 >4 325 331 328 -w 1.000000 >5 26 32 29 -w 1.000000 >6 185 191 188 -w 1.000000 >7 483 489 486 -w 1.000000 >8 468 474 471 -w 1.000000 >9 509 515 512 -w 1.000000 >10 52 58 55 -w 1.000000 >11 523 529 526 -w 1.000000 >12 280 286 283 -w 1.000000 >13 578 584 581 -w 1.000000 >14 195 201 198 -w 1.000000 >15 338 344 341 -w 1.000000 >16 397 403 400 -w 1.000000 >17 227 233 230 -w 1.000000 >18 759 765 762 -w 1.000000 >19 479 485 482 -w 1.000000 >20 567 573 570 -w 1.000000 >21 570 576 573 -w 1.000000 >22 261 267 264 -w 1.000000 >23 776 782 779 -w 1.000000 >24 237 243 240 -w 1.000000 >25 706 712 709 -w 1.000000 >26 267 273 270 -w 1.000000 >27 623 629 626 -w 1.000000 >28 295 301 298 -w 1.000000 >29 714 720 717 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.8 2 . 74 . . 1.1 3 . 52 . . 0.5 4 . . . 81 0.8 5 . . . 78 0.7 6 . 55 . 40 0.8 7 . . . 87 1.0 non- site . 19 . 30 site . 28 . 60 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 8 2 . 14 . . 11 3 . 7 . . 5 4 . . . 11 8 5 . . . 10 7 6 . 8 . 2 8 7 . . . 13 10 site . 2 . 6 5 Weighted motif model: POS A C G T Prob 1 0.090987 0.017586 0.079616 0.811810 0.810637 2 0.028292 0.738589 0.079616 0.153503 1.077056 3 0.247727 0.519154 0.016920 0.216199 0.487697 4 0.059639 0.017586 0.110964 0.811810 0.844651 5 0.153683 0.048934 0.016920 0.780462 0.730437 6 0.028292 0.550502 0.016920 0.404287 0.830538 7 0.059639 0.017586 0.048268 0.874506 1.014625 Conservedness in bits: 5.795641 Conservedness in prob: 10.486308 Concensus sequence: TCCTTCT Complete log-likelihood ratio = 215 bits Missing position information = 175 bits Log-likelihood ratio statistic = 39 bits Degrees of freedom = 21 Information per parameter = 1.9 bits MOTIF C 1-1 773 Ataggagtaa AGACAAA ttcggtgtag 779 1.000000 2-1 586 gaattgccgt ACAAAAA atcgatctag 592 1.000000 3-1 596 acttgtaaat AGAAAAA tgatgttcta 602 1.000000 4-1 706 acatactgct CAAAAAA tcttcataac 712 1.000000 5-1 345 ttgggatgat AAAAAAA tcaccctgca 351 1.000000 6-1 39 ggtagttgag AAAAAAA ccggaaagga 45 1.000000 7-1 622 caagaagcac AAAAAAA ggaggcgagt 628 1.000000 8-1 512 ctcgtatcaa AATAAAA ctagtcagtc 518 1.000000 9-1 39 ATAAAagacg AGAAAAA ataaaaacaa 45 1.000000 10-1 365 ccagctatag AATAAAA ttagcccagc 371 1.000000 11-1 618 gaaaaataaa AATAAAA agtggtctca 624 1.000000 12-1 315 tacaggatga AAAAAAA aagacattgc 321 1.000000 13-1 416 AGTGAAAcag ATAAAAA ttgttttAAA 422 1.000000 14-1 331 agtgataact CAAAAAA caagagtaca 337 1.000000 15-1 326 ttaatattcc AGAAAAA gaaatTCCTT 332 1.000000 16-1 147 ccattctcac AAAAAAA actcagaaat 153 1.000000 17-1 780 aataaaagct AAAAAAA ccaaaaaatt 786 1.000000 18-1 572 gtctatatta AAAAAAA ggcagcatAA 578 1.000000 19-1 616 tgcgatgatg AAACAAA catgaaacgt 622 1.000000 20-1 733 aaaaacaaaa ACAAAAA caggctaagc 739 1.000000 21-1 789 AAAAGGGAAA AAAAGCA gatat 795 1.000000 22-1 661 caAAAAGCAt ATAAAAA gcttcatatt 667 1.000000 23-1 434 AAaaatcaag AAAAAAA cctgattatg 440 1.000000 24-1 765 aaagcacact ACAAAAA tacgctatca 771 1.000000 25-1 656 taaatgcaaa AAAAAAA atgattcgaa 662 1.000000 26-1 321 aagtatttaa AAGAAAA gagacgaacc 327 1.000000 27-1 787 aagccaaacc AAAAAAA ctataca 793 1.000000 28-1 369 gcaattgcgc AAGAAAA tagtagaatg 375 1.000000 29-1 240 aaaccggcca AAAAAAA aaaaaaaaaa 246 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 773 779 776 -w 1.000000 >2 586 592 589 -w 1.000000 >3 596 602 599 -w 1.000000 >4 706 712 709 -w 1.000000 >5 345 351 348 -w 1.000000 >6 39 45 42 -w 1.000000 >7 622 628 625 -w 1.000000 >8 512 518 515 -w 1.000000 >9 39 45 42 -w 1.000000 >10 365 371 368 -w 1.000000 >11 618 624 621 -w 1.000000 >12 315 321 318 -w 1.000000 >13 416 422 419 -w 1.000000 >14 331 337 334 -w 1.000000 >15 326 332 329 -w 1.000000 >16 147 153 150 -w 1.000000 >17 780 786 783 -w 1.000000 >18 572 578 575 -w 1.000000 >19 616 622 619 -w 1.000000 >20 733 739 736 -w 1.000000 >21 789 795 792 -w 1.000000 >22 661 667 664 -w 1.000000 >23 434 440 437 -w 1.000000 >24 765 771 768 -w 1.000000 >25 656 662 659 -w 1.000000 >26 321 327 324 -w 1.000000 >27 787 793 790 -w 1.000000 >28 369 375 372 -w 1.000000 >29 240 246 243 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 87 . . . 1.0 2 66 . . . 0.4 3 78 . . . 0.7 4 87 . . . 1.0 5 91 . . . 1.1 6 91 . . . 1.1 7 94 . . . 1.3 non- site 31 . . . site 90 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 13 . . . 10 2 7 . . . 4 3 10 . . . 7 4 13 . . . 10 5 14 . . . 11 6 14 . . . 11 7 15 . . . 13 site 14 . . . 11 Weighted motif model: POS A C G T Prob 1 0.874687 0.080282 0.016920 0.028111 1.046419 2 0.655251 0.111630 0.142312 0.090807 0.399678 3 0.780643 0.017586 0.079616 0.122155 0.713691 4 0.874687 0.080282 0.016920 0.028111 1.046419 5 0.906034 0.017586 0.048268 0.028111 1.144756 6 0.906034 0.048934 0.016920 0.028111 1.144005 7 0.937382 0.017586 0.016920 0.028111 1.274533 Conservedness in bits: 6.769500 Conservedness in prob: 10.056893 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 257 bits Missing position information = 173 bits Log-likelihood ratio statistic = 83 bits Degrees of freedom = 21 Information per parameter = 3.99 bits MOTIF D 1-1 689 tgagtttacg TTTGTTT ttaataatca 695 1.000000 2-1 251 tgcctatttc TATCTTT taatcgtata 257 1.000000 3-1 331 cctacagggc TTTCTTT ttaaaacagg 337 1.000000 4-1 641 agtagaaaaa TTTGGTT tttaTTTTTT 647 1.000000 5-1 49 ctgaaaaacc GATCTTT aacgccaaga 55 1.000000 6-1 589 ttactttttt TTTTTTT gtttctgcat 595 1.000000 7-1 722 TTTTTCCTTT TTTATTT tgcccttaga 728 1.000000 8-1 633 taggcggctt TTCCGTT tggctgaagc 639 1.000000 9-1 280 cgtatcattg TTCCTTT ccctttattt 286 1.000000 10-1 668 ttcttaagtg TTTTTTT ctttagtctt 674 1.000000 11-1 499 aaggagcatg TACCGTT gattttgaag 505 1.000000 12-1 414 atctgtttac TTTCATT tacctctttg 420 1.000000 13-1 130 tgcaagttac ATTCTTT gtataacgaa 136 1.000000 14-1 574 acattggtat TTTCATT cggtgcagca 580 1.000000 15-1 733 gaactcgatc TTTCGCT ccgaaacacc 739 1.000000 16-1 597 ggagctataa TTCCATT acggcaaAAC 603 1.000000 17-1 215 acaTTTTTCT TTTCTTT tctttTCCTT 221 1.000000 18-1 95 gacctgttca AATTTTT gatacctatg 101 1.000000 19-1 428 taactttatt TTTTTTT attaattggg 434 1.000000 20-1 361 taatcttcgt TTTCATT actatctcca 367 1.000000 21-1 709 TTgtttttgt TTTGTTT tggtttggtt 715 1.000000 22-1 243 gtcgtatatt TTTCTTT atactgctag 249 1.000000 23-1 658 ttgttaacgt TTTTTTT ttttttttAA 664 1.000000 24-1 560 tacatggtgc TTTCCTT atgctcacta 566 1.000000 25-1 91 ttcgagaaag CTTCGGT ggtgttgcct 97 1.000000 26-1 664 ttgtgacaaa ATTGTTT ctgcctccaa 670 1.000000 27-1 229 aaagactact TTTCTTA cagaggctgg 235 1.000000 28-1 317 ctacaccgaa TTTGTCT ttactcctat 323 1.000000 29-1 687 cacctaaggg CATCTAT ttaataaggt 693 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 689 695 692 -w 1.000000 >2 251 257 254 -w 1.000000 >3 331 337 334 -w 1.000000 >4 641 647 644 -w 1.000000 >5 49 55 52 -w 1.000000 >6 589 595 592 -w 1.000000 >7 722 728 725 -w 1.000000 >8 633 639 636 -w 1.000000 >9 280 286 283 -w 1.000000 >10 668 674 671 -w 1.000000 >11 499 505 502 -w 1.000000 >12 414 420 417 -w 1.000000 >13 130 136 133 -w 1.000000 >14 574 580 577 -w 1.000000 >15 733 739 736 -w 1.000000 >16 597 603 600 -w 1.000000 >17 215 221 218 -w 1.000000 >18 95 101 98 -w 1.000000 >19 428 434 431 -w 1.000000 >20 361 367 364 -w 1.000000 >21 709 715 712 -w 1.000000 >22 243 249 246 -w 1.000000 >23 658 664 661 -w 1.000000 >24 560 566 563 -w 1.000000 >25 91 97 94 -w 1.000000 >26 664 670 667 -w 1.000000 >27 229 235 232 -w 1.000000 >28 317 323 320 -w 1.000000 >29 687 693 690 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 75 0.6 2 . . . 78 0.8 3 . . . 81 0.9 4 . 58 . . 0.6 5 . . . 62 0.4 6 . . . 81 0.8 7 . . . 91 1.1 non- site . . . 30 site . . . 73 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 6 2 . . . 10 8 3 . . . 11 9 4 . 9 . . 6 5 . . . 6 4 6 . . . 11 8 7 . . . 14 11 site . . . 9 6 Weighted motif model: POS A C G T Prob 1 0.122335 0.080282 0.048268 0.749114 0.595635 2 0.185031 0.017586 0.016920 0.780462 0.784280 3 0.028292 0.142978 0.016920 0.811810 0.911671 4 0.059639 0.581850 0.173660 0.184851 0.627656 5 0.153683 0.048934 0.173660 0.623723 0.360528 6 0.059639 0.080282 0.048268 0.811810 0.792440 7 0.059639 0.017586 0.016920 0.905854 1.143116 Conservedness in bits: 5.215327 Conservedness in prob: 9.548765 Concensus sequence: TTTCTTT Complete log-likelihood ratio = 193 bits Missing position information = 154 bits Log-likelihood ratio statistic = 38 bits Degrees of freedom = 21 Information per parameter = 1.83 bits MOTIF E 1-1 511 ctctgtcgtt CATTTTATTTT cacctaaacg 521 1.000000 2-1 439 tttgtgccgt TCTGCACGTTT tcgtataata 449 1.000000 3-1 154 tcatgttgtt CGTTTTGTTAT aagGTTGTTT 164 1.000000 4-1 427 attataaagg TCTTTAGCGTG agaggtacag 437 1.000000 5-1 588 atgatggttt CATGTATGTGT cagttaaaaa 598 1.000000 6-1 472 ttcacatact CTTTTATCTTT ctgaagtaaa 482 1.000000 7-1 711 ctaccgtact CTTTTTCCTTT TTTATTTtgc 721 1.000000 8-1 440 gtttgtttac CATTTTTGTTC ttatttactc 450 1.000000 9-1 95 tagtattctt TATGTGCATTT ttccctttaa 105 1.000000 10-1 172 tGCACAACAg AATTTCGTTTT gtagtatagt 182 1.000000 11-1 433 agcgttgatc CTTTCCATTAT gcagccatAA 443 1.000000 12-1 707 ctattcaaaa AATTTCTATTT acttttatat 717 1.000000 13-1 58 caagcaagtt CTTTTAGGTTT aaaagatatg 68 1.000000 14-1 163 tgggcttata CTTTTTTCTTT actactttag 173 1.000000 15-1 25 cttaacatta CATACATATTT agcgcttaac 35 1.000000 16-1 443 ttatattggc CATTTGATTTA tacttgtttc 453 1.000000 17-1 354 gatgcctact CTTTTGCTTTT tcatatcatg 364 1.000000 18-1 192 tggatagcac CTTACCTATTT ttatcaaaaa 202 1.000000 19-1 743 gatacgacat CCTTTATCTTT tttcctttaa 753 1.000000 20-1 614 catctctgtc TTTTCTGTTGT acatatatct 624 1.000000 21-1 690 gcttagcctg TTTTTGTTTTT gtttttgtTT 700 1.000000 22-1 383 tttcggtaat AGTTTAATTTT ccaaaaaggt 393 1.000000 23-1 92 tgttcaggca TTTATACTTTG ggtagttCAG 102 1.000000 24-1 722 agtttccacg TCTTTCTGTAT tttcatacct 732 1.000000 25-1 542 gtgttagtat TTTGTGTTTTT tacaacaacc 552 1.000000 26-1 216 aaagttgttt CATATGTGTTT tacgaacgtt 226 1.000000 27-1 552 attagtgtga AATTTGATTTT cttggccaaa 562 1.000000 28-1 775 ggatgattcc CTTTCGAATTT gtgaacgttg 785 1.000000 29-1 758 aagtctgaga ATTATACTCGT ataagcaaga 768 1.000000 sites: * *** *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 511 521 516 -w 1.000000 >2 439 449 444 -w 1.000000 >3 154 164 159 -w 1.000000 >4 427 437 432 -w 1.000000 >5 588 598 593 -w 1.000000 >6 472 482 477 -w 1.000000 >7 711 721 716 -w 1.000000 >8 440 450 445 -w 1.000000 >9 95 105 100 -w 1.000000 >10 172 182 177 -w 1.000000 >11 433 443 438 -w 1.000000 >12 707 717 712 -w 1.000000 >13 58 68 63 -w 1.000000 >14 163 173 168 -w 1.000000 >15 25 35 30 -w 1.000000 >16 443 453 448 -w 1.000000 >17 354 364 359 -w 1.000000 >18 192 202 197 -w 1.000000 >19 743 753 748 -w 1.000000 >20 614 624 619 -w 1.000000 >21 690 700 695 -w 1.000000 >22 383 393 388 -w 1.000000 >23 92 102 97 -w 1.000000 >24 722 732 727 -w 1.000000 >25 542 552 547 -w 1.000000 >26 216 226 221 -w 1.000000 >27 552 562 557 -w 1.000000 >28 775 785 780 -w 1.000000 >29 758 768 763 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 52 . . 0.5 3 . . . 94 1.3 4 . . . 66 0.5 5 . . . 75 0.8 9 . . . 87 1.0 10 . . . 75 0.6 11 . . . 81 0.8 non- site . . . 30 site . . . 76 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 7 . . 5 3 . . . 15 13 4 . . . 7 5 5 . . . 10 8 9 . . . 13 10 10 . . . 10 6 11 . . . 11 8 site . . . 10 7 Weighted motif model: POS A C G T Prob 1 0.185031 0.519154 0.016920 0.278895 0.500523 3 0.028292 0.017586 0.016920 0.937202 1.282005 4 0.185031 0.017586 0.142312 0.655071 0.454708 5 0.028292 0.205674 0.016920 0.749114 0.818047 9 0.028292 0.048934 0.048268 0.874506 1.022705 10 0.122335 0.017586 0.110964 0.749114 0.647846 11 0.059639 0.048934 0.079616 0.811810 0.793709 Conservedness in bits: 5.519542 Conservedness in prob: 9.552290 Concensus sequence: CTTTTTT Complete log-likelihood ratio = 208 bits Missing position information = 147 bits Log-likelihood ratio statistic = 61 bits Degrees of freedom = 21 Information per parameter = 2.91 bits MOTIF F 1-1 188 tggatttgga GAAAAACA gaagcttcag 195 1.000000 2-1 141 tatcgcgttc GCGTCACA gtgaagtcag 148 1.000000 3-1 368 cgacaccgtt CAAACACA agtggcagct 375 1.000000 4-1 229 tttatcacaa AATATACA attaaccaac 236 1.000000 5-1 676 gttgaaataa CAAAGACA ttggtatata 683 1.000000 6-1 210 tactcagccc GAGAAAAA agCAGCGACT 217 1.000000 7-1 134 agagaatgca GAAACAAA aaaaaaAAAA 141 1.000000 8-1 332 acttttccaa GAATAGTA attgccctat 339 1.000000 9-1 5 caat CAGATACG ttattgttta 12 1.000000 10-1 163 ctacatcatt GCACAACA gAATTTCGTT 170 1.000000 11-1 290 agtttccagt AAGTAAAA tttgtatgga 297 1.000000 12-1 643 ttattaaaag AAAATAAA actatccttt 650 1.000000 13-1 167 cccataaagc TAAAGACA tttgttgaaa 174 1.000000 14-1 246 GTttttgatt TAGAAACA ccaacagata 253 1.000000 15-1 227 tacacgagaa AAGAAACA tgattgactg 234 1.000000 16-1 760 atttataaac ACATTAAA taactaataa 767 1.000000 17-1 307 aatatcttaa TTTTAACA gcagttacca 314 1.000000 18-1 237 ctaaagatcc AATGATCA actccggaaa 244 1.000000 19-1 11 ccaaccaaca GCAATACA atcaacaagg 18 1.000000 20-1 186 cgggaaccgg TAAAGAAA ggtcgactct 193 1.000000 21-1 191 gtacacgaag CTGCAACA gccgttcgta 198 1.000000 22-1 140 taggaacata AAAATAAA tatctcgcgc 147 1.000000 23-1 224 atctcatttt GAGATACA acatgttcca 231 1.000000 24-1 448 aaacaacact GAAACAAA cttattgcac 455 1.000000 25-1 468 atgtaacatt GATAGACA gtctgtaata 475 1.000000 26-1 61 tatcctatat ATTATATA aaatatggat 68 1.000000 27-1 42 tacgctataa AAGAATCA actgaaaagt 49 1.000000 28-1 654 tttcagaagt GCGTCACA tattaatttt 661 1.000000 29-1 46 ttccaatggc ACAAGAGA ggaagacgaa 53 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 188 195 191 -w 1.000000 >2 141 148 144 -w 1.000000 >3 368 375 371 -w 1.000000 >4 229 236 232 -w 1.000000 >5 676 683 679 -w 1.000000 >6 210 217 213 -w 1.000000 >7 134 141 137 -w 1.000000 >8 332 339 335 -w 1.000000 >9 5 12 8 -w 1.000000 >10 163 170 166 -w 1.000000 >11 290 297 293 -w 1.000000 >12 643 650 646 -w 1.000000 >13 167 174 170 -w 1.000000 >14 246 253 249 -w 1.000000 >15 227 234 230 -w 1.000000 >16 760 767 763 -w 1.000000 >17 307 314 310 -w 1.000000 >18 237 244 240 -w 1.000000 >19 11 18 14 -w 1.000000 >20 186 193 189 -w 1.000000 >21 191 198 194 -w 1.000000 >22 140 147 143 -w 1.000000 >23 224 231 227 -w 1.000000 >24 448 455 451 -w 1.000000 >25 468 475 471 -w 1.000000 >26 61 68 64 -w 1.000000 >27 42 49 45 -w 1.000000 >28 654 661 657 -w 1.000000 >29 46 53 49 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 36 . 0.2 2 66 . . . 0.5 3 47 . 33 . 0.3 4 66 . . . 0.4 6 84 . . . 0.9 7 . 58 . . 0.6 8 91 . . . 1.1 non- site 31 . . . site 62 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 3 . 2 2 7 . . . 5 3 3 . 3 . 3 4 7 . . . 4 6 12 . . . 9 7 . 9 . . 6 8 14 . . . 11 site 6 . . . 3 Weighted motif model: POS A C G T Prob 1 0.341771 0.142978 0.361748 0.153503 0.175559 2 0.655251 0.205674 0.016920 0.122155 0.499823 3 0.467163 0.017586 0.330400 0.184851 0.349293 4 0.655251 0.080282 0.048268 0.216199 0.396386 6 0.843339 0.017586 0.048268 0.090807 0.897574 7 0.279075 0.581850 0.048268 0.090807 0.625998 8 0.906034 0.017586 0.048268 0.028111 1.144756 Conservedness in bits: 4.089389 Conservedness in prob: 8.503693 Concensus sequence: GAGAACA Complete log-likelihood ratio = 151 bits Missing position information = 128 bits Log-likelihood ratio statistic = 22 bits Degrees of freedom = 21 Information per parameter = 1.08 bits MOTIF G 1-1 436 aaattaatat GTGACGCAC ttctgaaaca 444 1.000000 2-1 356 CGTAAgtctc AAAAAAAAA ttgggttact 364 1.000000 3-1 781 taggtaacta ACAACTCAA ttgaatagta 789 1.000000 4-1 38 tccgtttcaa AAATGAATA taatcgtacg 46 1.000000 5-1 447 agaatacctt AAATAGAAA aggaaagata 455 1.000000 6-1 309 tgactacttg ACGTTCAAA agaacataca 317 1.000000 7-1 148 CAAAaaaaaa AAAAGTAAA aatttcgagt 156 1.000000 8-1 726 tggaccgtgt ATATATAAG agctattcac 734 1.000000 9-1 71 CCAGAACCaa AAATCAAAA ttaagtagta 79 1.000000 10-1 252 gcggatttta GCCTTACAT ttctgagtga 260 1.000000 11-1 86 atcaatcctt ACATATCAG cttccgttaa 94 1.000000 12-1 232 ctacatgact GTAACTAAA attcaatggg 240 1.000000 13-1 460 atcttaagat ATATCAAAA ctaatacaaa 468 1.000000 14-1 100 gttggaatta GAGTCTACG gaatgatact 108 1.000000 15-1 139 gcatactaag AAACTTAAA ctatcgccat 147 1.000000 16-1 179 caccagtcaa AAAAGACAA gtttaagcga 187 1.000000 17-1 678 caattaaaac GTATATAAG cgcagaataa 686 1.000000 18-1 382 tatgatagat ACATATAAG atcaaactaa 390 1.000000 19-1 792 caagtttctg AAAATCAAA 800 1.000000 20-1 698 aaaccaaaat AAATCAAAC caaaccaaaa 706 1.000000 21-1 341 actgccgtct AGATAACTC agattcacgc 349 1.000000 22-1 162 tcgcgctcac GGAAGGCAA ccactaactc 170 1.000000 23-1 417 gttacaattt ATGATAAAA aaatcaagAA 425 1.000000 24-1 320 cctttcagta AAATGAACA aattattttg 328 1.000000 25-1 738 ctataaaatc AAGATCAAG catagtaccg 746 1.000000 26-1 729 TTCGTTTatc ATATCCAAG ctccggtgtg 737 1.000000 27-1 763 aagagtcact AAATTAATA ctgggaagcc 771 1.000000 28-1 276 tgtagttctg GGATTCAAA gctgatacca 284 1.000000 29-1 539 gaaaatagtt ACAAACAAC tttgcgccag 547 1.000000 sites: * ** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 436 444 440 -w 1.000000 >2 356 364 360 -w 1.000000 >3 781 789 785 -w 1.000000 >4 38 46 42 -w 1.000000 >5 447 455 451 -w 1.000000 >6 309 317 313 -w 1.000000 >7 148 156 152 -w 1.000000 >8 726 734 730 -w 1.000000 >9 71 79 75 -w 1.000000 >10 252 260 256 -w 1.000000 >11 86 94 90 -w 1.000000 >12 232 240 236 -w 1.000000 >13 460 468 464 -w 1.000000 >14 100 108 104 -w 1.000000 >15 139 147 143 -w 1.000000 >16 179 187 183 -w 1.000000 >17 678 686 682 -w 1.000000 >18 382 390 386 -w 1.000000 >19 792 800 796 -w 1.000000 >20 698 706 702 -w 1.000000 >21 341 349 345 -w 1.000000 >22 162 170 166 -w 1.000000 >23 417 425 421 -w 1.000000 >24 320 328 324 -w 1.000000 >25 738 746 742 -w 1.000000 >26 729 737 733 -w 1.000000 >27 763 771 767 -w 1.000000 >28 276 284 280 -w 1.000000 >29 539 547 543 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 72 . 24 . 0.8 3 75 . . . 0.7 4 37 . . 56 0.4 6 37 . . . 0.0 7 72 24 . . 0.8 8 78 . . . 0.7 9 56 . 24 . 0.4 non- site 31 . . . site 64 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . 1 . 8 3 9 . . . 7 4 1 . . 5 4 6 1 . . . 0 7 9 1 . . 8 8 10 . . . 7 9 5 . 1 . 4 site 7 . . . 3 Weighted motif model: POS A C G T Prob 1 0.717947 0.017586 0.236356 0.028111 0.789235 3 0.749295 0.048934 0.173660 0.028111 0.738202 4 0.373119 0.048934 0.016920 0.561027 0.424252 6 0.373119 0.205674 0.110964 0.310243 0.034529 7 0.717947 0.237022 0.016920 0.028111 0.779527 8 0.780643 0.080282 0.016920 0.122155 0.711672 9 0.561207 0.142978 0.236356 0.059459 0.355078 Conservedness in bits: 3.832495 Conservedness in prob: 6.978290 Concensus sequence: AATAAAA Complete log-likelihood ratio = 146 bits Missing position information = 117 bits Log-likelihood ratio statistic = 29 bits Degrees of freedom = 21 Information per parameter = 1.39 bits MOTIF H 1-1 79 atgataccta AATAGTGCGG cgtgttgtct 88 1.000000 2-1 341 attgagcgaa AGTAGCGTAA gtctcAAAAA 350 1.000000 3-1 758 ctttcggttc AATAGTGCAA aaataggtaa 767 1.000000 4-1 621 tgtgcaacgt ACAAGAGCAA agtagaaaaa 630 1.000000 5-1 768 atagtaaaca AACAAACAAA caaacaaaaa 777 1.000000 6-1 10 gggcaaaat AAAAAAGGAA aaagagtacg 19 1.000000 7-1 208 tctaaaactc AAGAGCTTAT gcattgcttg 217 1.000000 8-1 276 cagcaatgta AAGAGTGCGG ttgattcgtt 285 1.000000 9-1 24 tattgtttaa AAGAGATAAA agacgAGAAA 33 1.000000 10-1 758 acctgatccg ACAAGAGCAA tttcaatacg 767 1.000000 11-1 550 tttgtgttcg AAAAAGGGAA gattgctcca 559 1.000000 12-1 784 tcgtgggcgt AAGAAGGCAA tctatta 793 1.000000 13-1 403 tctcaataga AAAAGTGAAA cagATAAAAA 412 1.000000 14-1 228 agactgcttt AAAAGCGAGT ttttgattTA 237 1.000000 15-1 166 attgtctcaa AATAGCAAAA aacgcaAAAA 175 1.000000 16-1 230 aagcttctga AAAAGAGAAA agtgagtgcg 239 1.000000 17-1 135 tcaggcccac AAGAAACAAA cgaatctttg 144 1.000000 18-1 439 ggctctcaaa AATAGTGAGA gaaatcacgc 448 1.000000 19-1 648 atttgaaaca AATAACGTAA ttctcgggat 657 1.000000 20-1 250 gtcagaatac CAGAATGGAA caaacgctga 259 1.000000 21-1 779 tttccgcgta AAAAGGGAAA AAAAGCAgat 788 1.000000 22-1 301 tccaattgga AATAAGGTAA taatgacttt 310 1.000000 23-1 250 catgatatgg AAAAACGTAT accagtgcta 259 1.000000 24-1 153 ggctagggga ACTAGAGAAA gacggctcaa 162 1.000000 25-1 715 gTTCTTCTat AAAAGTGCAA gctctataaa 724 1.000000 26-1 553 cacctttaaa AAAAACCAAG aacgtataaa 562 1.000000 27-1 104 catattgatg AAAAACGCTA acgtttttct 113 1.000000 28-1 100 ttgcccagat AGTAGCGCAA tggcttgata 109 1.000000 29-1 199 gcaccagtaa TAAATGATGA acgatttcgt 208 1.000000 sites: ** ** * ** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 79 88 83 -w 1.000000 >2 341 350 345 -w 1.000000 >3 758 767 762 -w 1.000000 >4 621 630 625 -w 1.000000 >5 768 777 772 -w 1.000000 >6 10 19 14 -w 1.000000 >7 208 217 212 -w 1.000000 >8 276 285 280 -w 1.000000 >9 24 33 28 -w 1.000000 >10 758 767 762 -w 1.000000 >11 550 559 554 -w 1.000000 >12 784 793 788 -w 1.000000 >13 403 412 407 -w 1.000000 >14 228 237 232 -w 1.000000 >15 166 175 170 -w 1.000000 >16 230 239 234 -w 1.000000 >17 135 144 139 -w 1.000000 >18 439 448 443 -w 1.000000 >19 648 657 652 -w 1.000000 >20 250 259 254 -w 1.000000 >21 779 788 783 -w 1.000000 >22 301 310 305 -w 1.000000 >23 250 259 254 -w 1.000000 >24 153 162 157 -w 1.000000 >25 715 724 719 -w 1.000000 >26 553 562 557 -w 1.000000 >27 104 113 108 -w 1.000000 >28 100 109 104 -w 1.000000 >29 199 208 203 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 87 . . . 1.0 2 78 . . . 0.8 4 94 . . . 1.3 5 37 . 55 . 0.8 7 . . 71 . 0.9 9 75 . . . 0.7 10 75 . . . 0.6 non- site 31 . 18 . site 68 . 24 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 13 . . . 10 2 10 . . . 8 4 15 . . . 13 5 1 . 9 . 8 7 . . 14 . 9 9 9 . . . 7 10 9 . . . 6 site 8 . 1 . 7 Weighted motif model: POS A C G T Prob 1 0.874687 0.048934 0.016920 0.059459 1.007057 2 0.780643 0.111630 0.079616 0.028111 0.752413 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.373119 0.017586 0.549835 0.059459 0.754657 7 0.090987 0.111630 0.706575 0.090807 0.949380 9 0.749295 0.017586 0.173660 0.059459 0.730216 10 0.749295 0.017586 0.110964 0.122155 0.642536 Conservedness in bits: 6.110792 Conservedness in prob: 10.431128 Concensus sequence: AAAGGAA Complete log-likelihood ratio = 227 bits Missing position information = 175 bits Log-likelihood ratio statistic = 52 bits Degrees of freedom = 21 Information per parameter = 2.51 bits MOTIF I 1-1 721 cattctacta TTTTCTT gcgcaattgc 727 1.000000 2-1 721 gacagtatgt GTTGTTT ttatttcgag 727 1.000000 3-1 168 TTGTTATaag GTTGTTT catatgtgtt 174 1.000000 4-1 652 TTGGTTttta TTTTTTT aagcaacatc 658 1.000000 5-1 382 atttgacgtt GTTTTTG tagaacatga 388 1.000000 6-1 105 tactcgcctc CTTTTTT tgtgcttctt 111 1.000000 7-1 687 attcctttcc GGTTTTT ttctcaacta 693 1.000000 8-1 21 tcttcttcca TTCTCTT aacttcgcct 27 1.000000 9-1 477 cactcacttt TCCTTTT tcgctgcctc 483 1.000000 10-1 422 aaaagtagac TTCGCGT aacacgaaaa 428 1.000000 11-1 39 tacttcttct TTGTTTT atgtgttgtt 45 1.000000 12-1 478 gaatgcaact TTCTTTT gtttgcatat 484 1.000000 13-1 783 tttatttgaa TTGTCTT gttcaccaag 789 1.000000 14-1 83 ttgttgtctt TTTGCTT gttggaatta 89 1.000000 15-1 269 acctgcaaag TTTGTTT ttataatttt 275 1.000000 16-1 318 aatcaatctg TTCGCTT taaggaagat 324 1.000000 17-1 208 atatgtaaca TTTTTCT TTTCTTTtct 214 1.000000 18-1 782 caacaactgt TTCTATT caaaaacttt 788 1.000000 19-1 378 gatgattcag TTCGCCT tctatccttt 384 1.000000 20-1 637 atatatctgc TTTTTTT ccctttttac 643 1.000000 21-1 517 gcttggaact GTTGCAG ctgttggcgc 523 1.000000 22-1 500 gcggaatatc TTTGTTT actcattaaa 506 1.000000 23-1 380 acagggtatt TTTTTTT tcacttctac 386 1.000000 24-1 350 cttgtccttc TTTGTTT caagcgttta 356 1.000000 25-1 243 aacgccagta TTTTTCC tgcggatact 249 1.000000 26-1 719 tcaagaatat TTCGTTT atcATATCCA 725 1.000000 27-1 723 atacatttct TCTTCTT cttctctctt 729 1.000000 28-1 563 tcacgggatt TTCGTTT aggtgaaaat 569 1.000000 29-1 638 tttgcccctc TTCGCTT tttatcgaaa 644 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 721 727 724 -w 1.000000 >2 721 727 724 -w 1.000000 >3 168 174 171 -w 1.000000 >4 652 658 655 -w 1.000000 >5 382 388 385 -w 1.000000 >6 105 111 108 -w 1.000000 >7 687 693 690 -w 1.000000 >8 21 27 24 -w 1.000000 >9 477 483 480 -w 1.000000 >10 422 428 425 -w 1.000000 >11 39 45 42 -w 1.000000 >12 478 484 481 -w 1.000000 >13 783 789 786 -w 1.000000 >14 83 89 86 -w 1.000000 >15 269 275 272 -w 1.000000 >16 318 324 321 -w 1.000000 >17 208 214 211 -w 1.000000 >18 782 788 785 -w 1.000000 >19 378 384 381 -w 1.000000 >20 637 643 640 -w 1.000000 >21 517 523 520 -w 1.000000 >22 500 506 503 -w 1.000000 >23 380 386 383 -w 1.000000 >24 350 356 353 -w 1.000000 >25 243 249 246 -w 1.000000 >26 719 725 722 -w 1.000000 >27 723 729 726 -w 1.000000 >28 563 569 566 -w 1.000000 >29 638 644 641 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 75 0.7 2 . . . 84 0.9 3 . 33 . 56 0.5 4 . . 42 53 0.8 5 . 33 . 59 0.6 6 . . . 78 0.7 7 . . . 84 0.9 non- site . . . 30 site . . . 73 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 7 2 . . . 12 9 3 . 3 . 5 5 4 . . 5 4 8 5 . 3 . 6 6 6 . . . 10 7 7 . . . 12 9 site . . . 9 7 Weighted motif model: POS A C G T Prob 1 0.028292 0.048934 0.173660 0.749114 0.743997 2 0.028292 0.080282 0.048268 0.843158 0.926460 3 0.028292 0.331066 0.079616 0.561027 0.543377 4 0.028292 0.017586 0.424444 0.529679 0.757371 5 0.059639 0.331066 0.016920 0.592375 0.611508 6 0.059639 0.111630 0.048268 0.780462 0.717762 7 0.028292 0.048934 0.079616 0.843158 0.927728 Conservedness in bits: 5.228204 Conservedness in prob: 8.493118 Concensus sequence: TTTGTTT Complete log-likelihood ratio = 198 bits Missing position information = 140 bits Log-likelihood ratio statistic = 57 bits Degrees of freedom = 21 Information per parameter = 2.74 bits MOTIF J 1-1 215 gcattgctag CAGCAAAACC aaagtatact 224 1.000000 2-1 160 tgaagtcagg CAGCCGTCCC ctcagcaatg 169 1.000000 3-1 397 ttctcgagaa CAGCAATGCC cacagtttta 406 1.000000 4-1 69 taccttgtgg CAGCACTAGC taacgctacg 78 1.000000 5-1 165 caaatgttga CAGCAATGGC tcaaggttat 174 1.000000 6-1 220 GAGAAAAAag CAGCGACTGC actaaactAG 229 1.000000 7-1 506 tagtttagtg CAGTCGCTGC ttttttctcg 515 1.000000 8-1 404 gtcatgtgat CAGTAATATC gtccatagtg 413 1.000000 9-1 59 aaaacaacgg CACCAGAACC aaAAATCAAA 68 1.000000 10-1 573 cgctaagtgg TAGCTGTAAC ttcggagacg 582 1.000000 11-1 163 tgataattac CAGCAATACT aatgctagga 172 1.000000 12-1 527 tttcaacatg CAGCCATTTC accgaaaata 536 1.000000 13-1 334 atttgaaaca CAGCATTTCT tttcggagag 343 1.000000 14-1 404 ttatcattgt CAGCAATTTC ggagaagggg 413 1.000000 15-1 292 ttttggcgtt CAGCAAGCGC gcggctccgc 301 1.000000 16-1 733 gaatagattt CACCAGCCTC aagataaatt 742 1.000000 17-1 468 ttaaagatct CAGCAGCCAC ccaatctaca 477 1.000000 18-1 306 aaaacgtgcc CAGCGAATTC gtggagaaat 315 1.000000 19-1 93 ACAgggtcag CAGCAGCAAC aaggccactc 102 1.000000 20-1 436 gccaatttat CAGCAATTGC tctgagtctt 445 1.000000 21-1 241 ttacccgact GCGCAGCCCA acgtgcgcgt 250 1.000000 22-1 69 gggcctttac CAGCCACTCC tcaacagaaa 78 1.000000 23-1 110 TTGggtagtt CAGCTAGGGA aggtcgggtt 119 1.000000 24-1 186 gtctcttccc CAGCAATTAT gtgtctttgg 195 1.000000 25-1 381 agggcagtac CAGCAAACGC tgcagttttt 390 1.000000 26-1 579 taaaaatgtg CAGTAGTCTC atttgtccag 588 1.000000 27-1 440 taaatacatg CAGGAAACAT acattacctc 449 1.000000 28-1 468 cgttatgcaa AACCCTTTAT atgcacaacc 477 1.000000 29-1 173 tagacctcta CAGCTTTTAC ataatggcac 182 1.000000 sites: ****** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 215 224 219 -w 1.000000 >2 160 169 164 -w 1.000000 >3 397 406 401 -w 1.000000 >4 69 78 73 -w 1.000000 >5 165 174 169 -w 1.000000 >6 220 229 224 -w 1.000000 >7 506 515 510 -w 1.000000 >8 404 413 408 -w 1.000000 >9 59 68 63 -w 1.000000 >10 573 582 577 -w 1.000000 >11 163 172 167 -w 1.000000 >12 527 536 531 -w 1.000000 >13 334 343 338 -w 1.000000 >14 404 413 408 -w 1.000000 >15 292 301 296 -w 1.000000 >16 733 742 737 -w 1.000000 >17 468 477 472 -w 1.000000 >18 306 315 310 -w 1.000000 >19 93 102 97 -w 1.000000 >20 436 445 440 -w 1.000000 >21 241 250 245 -w 1.000000 >22 69 78 73 -w 1.000000 >23 110 119 114 -w 1.000000 >24 186 195 190 -w 1.000000 >25 381 390 385 -w 1.000000 >26 579 588 583 -w 1.000000 >27 440 449 444 -w 1.000000 >28 468 477 472 -w 1.000000 >29 173 182 177 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 83 . . 1.4 2 91 . . . 1.1 3 . . 83 . 1.5 4 . 80 . . 1.3 5 62 . . . 0.3 6 53 . 30 . 0.4 10 . 71 . . 1.0 non- site . 19 . . site . 40 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 18 . . 14 2 14 . . . 11 3 . . 18 . 15 4 . 16 . . 13 5 6 . . . 3 6 4 . 2 . 4 10 . 13 . . 10 site . 4 . . 3 Weighted motif model: POS A C G T Prob 1 0.059639 0.832633 0.048268 0.059459 1.375734 2 0.906034 0.048934 0.016920 0.028111 1.144005 3 0.028292 0.111630 0.831967 0.028111 1.513619 4 0.028292 0.801285 0.048268 0.122155 1.287394 5 0.623903 0.174326 0.079616 0.122155 0.338658 6 0.529859 0.048934 0.299052 0.122155 0.350671 10 0.090987 0.707241 0.016920 0.184851 0.965551 Conservedness in bits: 6.975632 Conservedness in prob: 11.499518 Concensus sequence: CAGCAAC Complete log-likelihood ratio = 254 bits Missing position information = 196 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.78 bits seed 8 time: 24 seconds (0.40 minutes) MOTIF A 1-1 459 gaaacagtat TGAAACAG tattgaaaca 466 1.000000 2-1 649 cacAAATAAC TGCAACAG cgcctacaat 656 1.000000 3-1 680 atattacgga TGCAAGAA aaGGAGAAGg 687 1.000000 4-1 440 ttagcgtgag AGGTACAG gtgttatggc 447 1.000000 5-1 646 accaagaaaa TGAAAACA atatatagtg 653 1.000000 6-1 645 tacagggcat TGAAACAA ttGCAGAAAa 652 1.000000 7-1 590 aacagcatga TGCAACAG ctcaaaagac 597 1.000000 8-1 296 ttgattcgtt TTATACAA cttaatgtaa 303 1.000000 9-1 607 ctctcaccct TTCAACAA gtttattggg 614 1.000000 10-1 198 atagtttatt AGAAACAA atgtgaatag 205 1.000000 11-1 691 agcttcttgt TTTAACAA tacgatttaa 698 1.000000 12-1 231 actacatgac TGTAACTA aaattcaatg 238 1.000000 13-1 366 cgtttcaaaa TGAAACAA acgccgttgt 373 1.000000 14-1 461 tactcaaatg TGTCACAA tttcaacttc 468 1.000000 15-1 551 ccatgtttgg TGGAACAA ttgtgaaacg 558 1.000000 16-1 619 aaaacagaac TGAAACAA gtatattggc 626 1.000000 17-1 599 cataattttc TGAAACAA tattaaaaca 606 1.000000 18-1 75 tagaaaatta TGGAACAA tagacctgtt 82 1.000000 19-1 614 ggtgcgatga TGAAACAA acatgaaacg 621 1.000000 20-1 255 aataccagaa TGGAACAA acgctgatac 262 1.000000 21-1 192 tacacgaagc TGCAACAG ccgttcgtac 199 1.000000 22-1 201 aaaagtgagg TGTAGCTT actaaagcat 208 1.000000 23-1 334 tttacagctt TGAAAGTA acaggaagaa 341 1.000000 24-1 447 aaaacaacac TGAAACAA acttattgca 454 1.000000 25-1 163 actcccttga TGACCCAA aaagagatga 170 1.000000 26-1 1 AGCAACCA gctgtcaaaa 8 1.000000 27-1 421 aaacgaaatt TGATACAA gtaaatacat 428 1.000000 28-1 44 cgtccaaaac TGCCAGTA ttccatacca 51 1.000000 29-1 772 tactcgtata AGCAAGAA ataaagatac 779 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 459 466 462 -w 1.000000 >2 649 656 652 -w 1.000000 >3 680 687 683 -w 1.000000 >4 440 447 443 -w 1.000000 >5 646 653 649 -w 1.000000 >6 645 652 648 -w 1.000000 >7 590 597 593 -w 1.000000 >8 296 303 299 -w 1.000000 >9 607 614 610 -w 1.000000 >10 198 205 201 -w 1.000000 >11 691 698 694 -w 1.000000 >12 231 238 234 -w 1.000000 >13 366 373 369 -w 1.000000 >14 461 468 464 -w 1.000000 >15 551 558 554 -w 1.000000 >16 619 626 622 -w 1.000000 >17 599 606 602 -w 1.000000 >18 75 82 78 -w 1.000000 >19 614 621 617 -w 1.000000 >20 255 262 258 -w 1.000000 >21 192 199 195 -w 1.000000 >22 201 208 204 -w 1.000000 >23 334 341 337 -w 1.000000 >24 447 454 450 -w 1.000000 >25 163 170 166 -w 1.000000 >26 1 8 4 -w 1.000000 >27 421 428 424 -w 1.000000 >28 44 51 47 -w 1.000000 >29 772 779 775 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.9 2 . . 83 . 1.5 4 75 . . . 0.6 5 87 . . . 1.0 6 . 77 . . 1.2 7 75 . . . 0.6 8 75 . . . 0.7 non- site 31 . . . site 49 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 9 2 . . 18 . 15 4 9 . . . 6 5 13 . . . 10 6 . 15 . . 12 7 9 . . . 6 8 9 . . . 7 site 3 . . . 1 Weighted motif model: POS A C G T Prob 1 0.153683 0.017586 0.016920 0.811810 0.854629 2 0.028292 0.017586 0.831967 0.122155 1.474897 4 0.749295 0.111630 0.016920 0.122155 0.639089 5 0.874687 0.048934 0.048268 0.028111 1.015793 6 0.059639 0.769937 0.142312 0.028111 1.239823 7 0.749295 0.080282 0.016920 0.153503 0.634357 8 0.749295 0.017586 0.173660 0.059459 0.730216 Conservedness in bits: 6.588805 Conservedness in prob: 10.839440 Concensus sequence: TGAACAA Complete log-likelihood ratio = 244 bits Missing position information = 186 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.77 bits MOTIF B 1-1 566 tcgcctttcg CTCTTTT gtatgtaggc 572 1.000000 2-1 39 agtcctaaac TTTGTTT gattatgaaa 45 1.000000 3-1 332 ctacagggct TTCTTTT taaaacagga 338 1.000000 4-1 641 agtagaaaaa TTTGGTT TTTATTTTTt 647 1.000000 5-1 130 ttccaagaga TTTGTTT gaatatactt 136 1.000000 6-1 131 tgagaggtct TTTGAGC tgttgcatca 137 1.000000 7-1 688 ttcctttccg GTTTTTT tctcaactac 694 1.000000 8-1 450 catttttgtt CTTATTT actctctaat 456 1.000000 9-1 15 cagatacgtt ATTGTTT aaaagagata 21 1.000000 10-1 456 tgcaggtgga TTTTTTT ggcagatact 462 1.000000 11-1 38 ttacttcttc TTTGTTT tatgtgttgt 44 1.000000 12-1 793 taagaaggca ATCTATT a 799 1.000000 13-1 340 AACAcagcat TTCTTTT cggagagctc 346 1.000000 14-1 296 gcggttctat TTCTGTT aacaagaagg 302 1.000000 15-1 269 acctgcaaag TTTGTTT ttataatttt 275 1.000000 16-1 318 aatcaatctg TTCGCTT taaggaagat 324 1.000000 17-1 151 caaacgaatc TTTGATT gacgcaaaga 157 1.000000 18-1 677 acactagcgg GTTGTTT tatcataatt 683 1.000000 19-1 392 ccttctatcc TTTGTTT acgTATTTGT 398 1.000000 20-1 543 atcggacata ATTGCGT tggtcccgtt 549 1.000000 21-1 724 tttggtttgg TTTGATT tattttggtt 730 1.000000 22-1 373 ttgtggcttt TTTCGGT aatagtttaa 379 1.000000 23-1 379 aacagggtat TTTTTTT ttcacttcta 385 1.000000 24-1 350 CTTGtccttc TTTGTTT caagcgttta 356 1.000000 25-1 771 ctgttagagt CTTTGGT acgcaaacat 777 1.000000 26-1 189 tgttgcccat TTTGTTC gctttgttat 195 1.000000 27-1 491 cCCAGCAGtc TTTTTTT agaaatcgcg 497 1.000000 28-1 187 GGCCTTatca TTTGATT caagatgata 193 1.000000 29-1 571 ccgcctgctt ATTCTTT ttccagctct 577 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 566 572 569 -w 1.000000 >2 39 45 42 -w 1.000000 >3 332 338 335 -w 1.000000 >4 641 647 644 -w 1.000000 >5 130 136 133 -w 1.000000 >6 131 137 134 -w 1.000000 >7 688 694 691 -w 1.000000 >8 450 456 453 -w 1.000000 >9 15 21 18 -w 1.000000 >10 456 462 459 -w 1.000000 >11 38 44 41 -w 1.000000 >12 793 799 796 -w 1.000000 >13 340 346 343 -w 1.000000 >14 296 302 299 -w 1.000000 >15 269 275 272 -w 1.000000 >16 318 324 321 -w 1.000000 >17 151 157 154 -w 1.000000 >18 677 683 680 -w 1.000000 >19 392 398 395 -w 1.000000 >20 543 549 546 -w 1.000000 >21 724 730 727 -w 1.000000 >22 373 379 376 -w 1.000000 >23 379 385 382 -w 1.000000 >24 350 356 353 -w 1.000000 >25 771 777 774 -w 1.000000 >26 189 195 192 -w 1.000000 >27 491 497 494 -w 1.000000 >28 187 193 190 -w 1.000000 >29 571 577 574 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 66 0.4 2 . . . 94 1.3 3 . . . 75 0.8 4 . . 52 . 0.6 5 . . . 59 0.3 6 . . . 81 0.9 7 . . . 87 1.1 non- site . . . 30 site . . . 74 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 7 4 2 . . . 15 13 3 . . . 10 8 4 . . 8 . 6 5 . . . 6 3 6 . . . 11 9 7 . . . 13 11 site . . . 10 7 Weighted motif model: POS A C G T Prob 1 0.153683 0.111630 0.079616 0.655071 0.366918 2 0.028292 0.017586 0.016920 0.937202 1.282005 3 0.028292 0.205674 0.016920 0.749114 0.818047 4 0.059639 0.080282 0.518487 0.341591 0.571405 5 0.185031 0.080282 0.142312 0.592375 0.259807 6 0.028292 0.017586 0.142312 0.811810 0.916626 7 0.028292 0.080282 0.016920 0.874506 1.053330 Conservedness in bits: 5.268138 Conservedness in prob: 9.267471 Concensus sequence: TTTGTTT Complete log-likelihood ratio = 199 bits Missing position information = 148 bits Log-likelihood ratio statistic = 51 bits Degrees of freedom = 21 Information per parameter = 2.45 bits MOTIF C 1-1 201 aaacagaagc TTCAGCATT gctaGCAGCA 209 1.000000 2-1 520 tactacccaa TTTCCTACT taccaaacgc 528 1.000000 3-1 156 Atgttgttcg TTTTGTTAT aaggttgttt 164 1.000000 4-1 360 AAttgatgtg ATGTGCCTT atcacaattc 368 1.000000 5-1 563 TTTaggattt TTTCCCATT aagattatga 571 1.000000 6-1 531 gctcttgagt TTTAGATCT gtttcaccct 539 1.000000 7-1 713 accgtactct TTTTCCTTT tttattttgc 721 1.000000 8-1 783 actcgttgac ATAAGCTTT attattagg 791 1.000000 9-1 772 ataggccata TTAGGTGTT accacaaact 780 1.000000 10-1 174 cacaacagaa TTTCGTTTT gtagtatagt 182 1.000000 11-1 411 TTtaatttat TTTTGTGTT gcaagcgttg 419 1.000000 12-1 715 AAAAtttcta TTTACTTTT atatttcttg 723 1.000000 13-1 61 GCAAgttctt TTAGGTTTA aaagatatgt 69 1.000000 14-1 50 aagatctttg ATGTGTCAT caataccacg 58 1.000000 15-1 8 ttacata TTTAGCGCT taacattaca 16 1.000000 16-1 438 tgacattata TTGGCCATT tgatttatac 446 1.000000 17-1 248 Caatagctaa TTTACGTTT ccctacggta 256 1.000000 18-1 331 gaaatttata CTGTCTTTT gcacttcaag 339 1.000000 19-1 585 cactgtcact TTTCGCGCT gtctcatttt 593 1.000000 20-1 518 actttatgga ATACGCTTT actattatcg 526 1.000000 21-1 697 cTGTTTTTGT TTTTGTTTT tgttttgttt 705 1.000000 22-1 6 ctgaa TTTTGCTAT gaattagtta 14 1.000000 23-1 147 ATGTtgttcg TTTTGTTAT aaggttgttt 155 1.000000 24-1 578 tgctcactat TTCGGATTT acttctagtc 586 1.000000 25-1 316 tgaagaagat ATTTGGCAA atttggacta 324 1.000000 26-1 433 gttcccgaga TACACTCTT gcagtatgta 441 1.000000 27-1 542 cgacacagcc ATTAGTGTG aaatttgatt 550 1.000000 28-1 316 tctacaccga ATTTGTCTT tactcctatg 324 1.000000 29-1 482 ATATTCTCTt TTTTGTTTT attcttttct 490 1.000000 sites: *** ** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 201 209 205 -w 1.000000 >2 520 528 524 -w 1.000000 >3 156 164 160 -w 1.000000 >4 360 368 364 -w 1.000000 >5 563 571 567 -w 1.000000 >6 531 539 535 -w 1.000000 >7 713 721 717 -w 1.000000 >8 783 791 787 -w 1.000000 >9 772 780 776 -w 1.000000 >10 174 182 178 -w 1.000000 >11 411 419 415 -w 1.000000 >12 715 723 719 -w 1.000000 >13 61 69 65 -w 1.000000 >14 50 58 54 -w 1.000000 >15 8 16 12 -w 1.000000 >16 438 446 442 -w 1.000000 >17 248 256 252 -w 1.000000 >18 331 339 335 -w 1.000000 >19 585 593 589 -w 1.000000 >20 518 526 522 -w 1.000000 >21 697 705 701 -w 1.000000 >22 6 14 10 -w 1.000000 >23 147 155 151 -w 1.000000 >24 578 586 582 -w 1.000000 >25 316 324 320 -w 1.000000 >26 433 441 437 -w 1.000000 >27 542 550 546 -w 1.000000 >28 316 324 320 -w 1.000000 >29 482 490 486 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 69 0.6 2 . . . 91 1.1 3 . . . 59 0.3 5 . 27 68 . 1.2 6 . 33 . 50 0.3 8 . . . 66 0.4 9 . . . 84 0.9 non- site . . . 30 site . . . 63 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 8 6 2 . . . 14 11 3 . . . 6 3 5 . 1 13 . 12 6 . 3 . 3 3 8 . . . 7 4 9 . . . 12 9 site . . . 6 3 Weighted motif model: POS A C G T Prob 1 0.247727 0.048934 0.016920 0.686418 0.552576 2 0.059639 0.017586 0.016920 0.905854 1.143116 3 0.153683 0.111630 0.142312 0.592375 0.255478 5 0.028292 0.268370 0.675227 0.028111 1.186961 6 0.090987 0.331066 0.079616 0.498331 0.340746 8 0.185031 0.142978 0.016920 0.655071 0.449753 9 0.090987 0.017586 0.048268 0.843158 0.903932 Conservedness in bits: 4.832563 Conservedness in prob: 8.803371 Concensus sequence: TTTGCTT Complete log-likelihood ratio = 180 bits Missing position information = 156 bits Log-likelihood ratio statistic = 24 bits Degrees of freedom = 21 Information per parameter = 1.16 bits MOTIF D 1-1 75 ccccatgata CCTAAAT agtgcggcgt 81 1.000000 2-1 336 gttggattga GCGAAAG tagcgtaagt 342 1.000000 3-1 690 TGCAAGAAaa GGAGAAG ggcgcatcac 696 1.000000 4-1 472 gcgaataagg GCAGAAA ttaatcaaat 478 1.000000 5-1 113 cgacacggac GCAAACG ttccaagaga 119 1.000000 6-1 388 cattcaaggg GCGGTAG tgcttgtagt 394 1.000000 7-1 388 gttaaaaagt CCGAACG aatttatcct 394 1.000000 8-1 642 TTTCCGTTtg GCTGAAG caactttgaa 648 1.000000 9-1 67 ggcaccagaa CCAAAAA tcaaaattaa 73 1.000000 10-1 553 atctattgtt CCCGCAG acacgctaag 559 1.000000 11-1 386 ctcgcatcct TCAGTAA tTTTTTTTTT 392 1.000000 12-1 579 aaatgacatc GTAAAGG tttcaaatgc 585 1.000000 13-1 327 ttgcataatt TGAAACA cagcatTTCT 333 1.000000 14-1 1 GCAGAAG tatcactaac 7 1.000000 15-1 607 tcattcgcat CCGAAAA agaaactgaa 613 1.000000 16-1 62 aaattgaaaa CGATAAA gaactagcca 68 1.000000 17-1 672 AGCAAgcaat TAAAACG tatataagcg 678 1.000000 18-1 788 ctgtttctat TCAAAAA ctttga 794 1.000000 19-1 224 gtagaccgca ACAGAAT ggtcaACAGC 230 1.000000 20-1 291 ggaggcacac GCAGAAG ctagatactt 297 1.000000 21-1 755 ttaaatcttc GAGGAAA tttgcgcttt 761 1.000000 22-1 572 ggatgcttcc GCAGAAG tgcccgtagg 578 1.000000 23-1 624 ttcgccaaac GACAAAA actggaggag 630 1.000000 24-1 70 ttacgatgct GCAGAAG ataacgaact 76 1.000000 25-1 207 ctacttatta GTGGAGG gagcgctgga 213 1.000000 26-1 578 ataaaaatgt GCAGTAG tctcatttgt 584 1.000000 27-1 190 ataaactgaa GAGGAAC tatatccata 196 1.000000 28-1 646 caatactgtt TCAGAAG tgcgtcacat 652 1.000000 29-1 44 acttccaatg GCACAAG agaggaagac 50 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 75 81 78 -w 1.000000 >2 336 342 339 -w 1.000000 >3 690 696 693 -w 1.000000 >4 472 478 475 -w 1.000000 >5 113 119 116 -w 1.000000 >6 388 394 391 -w 1.000000 >7 388 394 391 -w 1.000000 >8 642 648 645 -w 1.000000 >9 67 73 70 -w 1.000000 >10 553 559 556 -w 1.000000 >11 386 392 389 -w 1.000000 >12 579 585 582 -w 1.000000 >13 327 333 330 -w 1.000000 >14 1 7 4 -w 1.000000 >15 607 613 610 -w 1.000000 >16 62 68 65 -w 1.000000 >17 672 678 675 -w 1.000000 >18 788 794 791 -w 1.000000 >19 224 230 227 -w 1.000000 >20 291 297 294 -w 1.000000 >21 755 761 758 -w 1.000000 >22 572 578 575 -w 1.000000 >23 624 630 627 -w 1.000000 >24 70 76 73 -w 1.000000 >25 207 213 210 -w 1.000000 >26 578 584 581 -w 1.000000 >27 190 196 193 -w 1.000000 >28 646 652 649 -w 1.000000 >29 44 50 47 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 55 . 0.6 2 . 64 . . 0.7 3 59 . 24 . 0.4 4 37 . 52 . 0.6 5 81 . . . 0.8 6 75 . . . 0.7 7 . . 55 . 0.6 non- site 31 . 18 . site 44 . 30 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 9 . 6 2 . 11 . . 7 3 6 . 1 . 4 4 1 . 8 . 6 5 11 . . . 8 6 9 . . . 7 7 . . 9 . 6 site 2 . 2 . 3 Weighted motif model: POS A C G T Prob 1 0.059639 0.205674 0.549835 0.184851 0.598080 2 0.153683 0.644545 0.110964 0.090807 0.719388 3 0.592555 0.080282 0.236356 0.090807 0.369616 4 0.373119 0.048934 0.518487 0.059459 0.625557 5 0.811991 0.048934 0.016920 0.122155 0.804209 6 0.749295 0.142978 0.079616 0.028111 0.692703 7 0.310423 0.048934 0.549835 0.090807 0.600568 Conservedness in bits: 4.410120 Conservedness in prob: 9.920251 Concensus sequence: GCAGAAG Complete log-likelihood ratio = 159 bits Missing position information = 136 bits Log-likelihood ratio statistic = 23 bits Degrees of freedom = 21 Information per parameter = 1.11 bits MOTIF E 1-1 488 atgtattacc CGGACTCTGC atgctctgtc 497 1.000000 2-1 468 tattaaaggg ATCGTGTTGT tattcacggc 477 1.000000 3-1 137 gaaggtcggg TTTTGTCTCA tgttgttcgT 146 1.000000 4-1 57 taatcgtacg TTTACCTTGT ggcagcacta 66 1.000000 5-1 546 TTgaaagtcc TTCTCGCTTT aggatttTTT 555 1.000000 6-1 747 cttctaatag CTAGTTCGTT tgaactacaa 756 1.000000 7-1 482 tgatgtttta AGCCTTCTTT cctctagttt 491 1.000000 8-1 630 atttaggcgg CTTTTCCGTT tgGCTGAAGc 639 1.000000 9-1 473 tgggcactca CTTTTCCTTT ttcgctgcct 482 1.000000 10-1 570 acacgctaag TGGTAGCTGT aacttcggag 579 1.000000 11-1 519 tttgaagagc CAATTGCTCC aaattttgga 528 1.000000 12-1 378 ttcattgttg CTTTATTTTT ccaagtaagg 387 1.000000 13-1 249 agtaatcact TTCAAGCTGT agtatgtaaa 258 1.000000 14-1 697 atatgctatc TTGGCCCTTT atataacatg 706 1.000000 15-1 644 tccagtaaaa CGAGACCTGT tgatggattg 653 1.000000 16-1 576 gtgcataaga TTACATTTGT cggagctata 585 1.000000 17-1 523 tcaaatttta GGTTAGCTTT caattgtaaa 532 1.000000 18-1 353 cttcaaggaa ATTACACTAT gatggctcat 362 1.000000 19-1 539 gtatctctgc AGGATGCCCT ttttgacgta 548 1.000000 20-1 400 aactcgtcag ATATTGGCGT aagcattgag 409 1.000000 21-1 305 Gcgagtccag CTCGCGCGAT tgggctgcta 314 1.000000 22-1 56 tggtattttt AAAGGGCCTT taccagccac 65 1.000000 23-1 131 ggtcgggttt TGTCTCATGT tgttcgTTTT 140 1.000000 24-1 334 gaacaaatta TTTTGCCTTG tccttcTTTG 343 1.000000 25-1 400 ctgcagtttt TTACATCTTT gagactcttt 409 1.000000 26-1 264 atactgaggg ATCTCATTCT gagatacaac 273 1.000000 27-1 596 ttgttacaaa TTATTGATTT taatatatat 605 1.000000 28-1 173 taataaaata ATCGGGCCTT atcaTTTGAT 182 1.000000 29-1 471 gctggtcgct TATATTCTCT tTTTTGTTTT 480 1.000000 sites: ** ***** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 488 497 492 -w 1.000000 >2 468 477 472 -w 1.000000 >3 137 146 141 -w 1.000000 >4 57 66 61 -w 1.000000 >5 546 555 550 -w 1.000000 >6 747 756 751 -w 1.000000 >7 482 491 486 -w 1.000000 >8 630 639 634 -w 1.000000 >9 473 482 477 -w 1.000000 >10 570 579 574 -w 1.000000 >11 519 528 523 -w 1.000000 >12 378 387 382 -w 1.000000 >13 249 258 253 -w 1.000000 >14 697 706 701 -w 1.000000 >15 644 653 648 -w 1.000000 >16 576 585 580 -w 1.000000 >17 523 532 527 -w 1.000000 >18 353 362 357 -w 1.000000 >19 539 548 543 -w 1.000000 >20 400 409 404 -w 1.000000 >21 305 314 309 -w 1.000000 >22 56 65 60 -w 1.000000 >23 131 140 135 -w 1.000000 >24 334 343 338 -w 1.000000 >25 400 409 404 -w 1.000000 >26 264 273 268 -w 1.000000 >27 596 605 600 -w 1.000000 >28 173 182 177 -w 1.000000 >29 471 480 475 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 27 . 40 0.1 2 . . 24 62 0.5 6 . 24 39 . 0.3 7 . 68 . . 0.8 8 . . . 72 0.6 9 . . 30 44 0.2 10 . . . 81 0.8 non- site . 19 . 30 site . 23 . 51 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 1 . 2 1 2 . . 1 6 5 6 . 1 4 . 3 7 . 12 . . 8 8 . . . 9 6 9 . . 2 2 2 10 . . . 11 8 site . 1 . 4 2 Weighted motif model: POS A C G T Prob 1 0.279075 0.268370 0.048268 0.404287 0.145234 2 0.122335 0.017586 0.236356 0.623723 0.487213 6 0.090987 0.237022 0.393096 0.278895 0.290514 7 0.090987 0.675893 0.048268 0.184851 0.827265 8 0.028292 0.142978 0.110964 0.717766 0.628958 9 0.090987 0.174326 0.299052 0.435635 0.232404 10 0.059639 0.080282 0.048268 0.811810 0.792440 Conservedness in bits: 3.404029 Conservedness in prob: 7.659524 Concensus sequence: CTGCTGT Complete log-likelihood ratio = 124 bits Missing position information = 117 bits Log-likelihood ratio statistic = 7 bits Degrees of freedom = 21 Information per parameter = 0.336 bits MOTIF F 1-1 214 AGCATTgcta GCAGCAA aaccaaagta 220 1.000000 2-1 749 aaatttagaa ACAGCAA gcctcatcat 755 1.000000 3-1 396 tttctcgaga ACAGCAA tgcccacagt 402 1.000000 4-1 398 tatttcctct GCAGCAA caagtttcct 404 1.000000 5-1 164 ccaaatgttg ACAGCAA tggctcaagg 170 1.000000 6-1 655 TGAAACAAtt GCAGAAA agcaacatac 661 1.000000 7-1 131 ctgagagaat GCAGAAA caAAAAAAAa 137 1.000000 8-1 265 agtaagccat GCAGCAA tgtaaagagt 271 1.000000 9-1 410 cacgttgcta CCACTGA tatgaaacaa 416 1.000000 10-1 778 tttcaatacg GCAGCAA ctttttacta 784 1.000000 11-1 162 atgataatta CCAGCAA tactaatgct 168 1.000000 12-1 526 ttttcaacat GCAGCCA tttcaccgaa 532 1.000000 13-1 48 tcgagaatag CAAGCAA gttcttTTAG 54 1.000000 14-1 585 ttcattcggt GCAGCAT tttaattcag 591 1.000000 15-1 696 tgctactgct CAAGAGA gctTCTTTTT 702 1.000000 16-1 120 tacgaaattt GAAGCAA aaaGGAAAAT 126 1.000000 17-1 660 taagcagttc CCAGCAA gcaatTAAAA 666 1.000000 18-1 305 caaaacgtgc CCAGCGA attcgtggag 311 1.000000 19-1 236 AGAATggtca ACAGCAA tccaatgagt 242 1.000000 20-1 435 cgccaattta TCAGCAA ttgctctgag 441 1.000000 21-1 289 ccacgctgtt GCAGCAG cgagtccagC 295 1.000000 22-1 171 cggaaggcaa CCACTAA ctccttttca 177 1.000000 23-1 573 tgggtatttt CCACCAA ctttattggc 579 1.000000 24-1 185 ggtctcttcc CCAGCAA ttatgtgtct 191 1.000000 25-1 380 tagggcagta CCAGCAA acgctgcagt 386 1.000000 26-1 626 ctacaataat ACAGCAA ggatggggta 632 1.000000 27-1 482 gagacggggc CCAGCAG tcTTTTTTTa 488 1.000000 28-1 249 accaatcagc CCACCAA attcaaactc 255 1.000000 29-1 192 cataatggca CCAGTAA taaatgatga 198 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 214 220 217 -w 1.000000 >2 749 755 752 -w 1.000000 >3 396 402 399 -w 1.000000 >4 398 404 401 -w 1.000000 >5 164 170 167 -w 1.000000 >6 655 661 658 -w 1.000000 >7 131 137 134 -w 1.000000 >8 265 271 268 -w 1.000000 >9 410 416 413 -w 1.000000 >10 778 784 781 -w 1.000000 >11 162 168 165 -w 1.000000 >12 526 532 529 -w 1.000000 >13 48 54 51 -w 1.000000 >14 585 591 588 -w 1.000000 >15 696 702 699 -w 1.000000 >16 120 126 123 -w 1.000000 >17 660 666 663 -w 1.000000 >18 305 311 308 -w 1.000000 >19 236 242 239 -w 1.000000 >20 435 441 438 -w 1.000000 >21 289 295 292 -w 1.000000 >22 171 177 174 -w 1.000000 >23 573 579 576 -w 1.000000 >24 185 191 188 -w 1.000000 >25 380 386 383 -w 1.000000 >26 626 632 629 -w 1.000000 >27 482 488 485 -w 1.000000 >28 249 255 252 -w 1.000000 >29 192 198 195 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 43 33 . 0.5 2 . 83 . . 1.4 3 94 . . . 1.3 4 . . 80 . 1.4 5 . 74 . . 1.0 6 81 . . . 0.8 7 84 . . . 0.9 non- site 31 19 . . site 44 33 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 5 3 . 5 2 . 18 . . 14 3 15 . . . 13 4 . . 17 . 14 5 . 14 . . 10 6 11 . . . 8 7 12 . . . 9 site 2 3 . . 4 Weighted motif model: POS A C G T Prob 1 0.185031 0.425110 0.330400 0.059459 0.476212 2 0.122335 0.832633 0.016920 0.028111 1.432731 3 0.937382 0.017586 0.016920 0.028111 1.274533 4 0.028292 0.142978 0.800619 0.028111 1.427723 5 0.122335 0.738589 0.016920 0.122155 1.040560 6 0.811991 0.048934 0.110964 0.028111 0.846379 7 0.843339 0.017586 0.079616 0.059459 0.913110 Conservedness in bits: 7.411247 Conservedness in prob: 11.691913 Concensus sequence: CCAGCAA Complete log-likelihood ratio = 275 bits Missing position information = 202 bits Log-likelihood ratio statistic = 72 bits Degrees of freedom = 21 Information per parameter = 3.46 bits MOTIF G 1-1 544 aatcccgtga AAAAAAT ttatatcgcc 550 1.000000 2-1 356 cgtaagtctc AAAAAAA aattgggtta 362 1.000000 3-1 35 tatatattat ATAAAAT atgaatcata 41 1.000000 4-1 345 caagaatgca AGAAAAA ttgatgtgAT 351 1.000000 5-1 345 ttgggatgat AAAAAAA tcaccctgca 351 1.000000 6-1 212 ctcagcccga GAAAAAA gcagcgactg 218 1.000000 7-1 622 caagaagcac AAAAAAA ggaggcgagt 628 1.000000 8-1 513 tcgtatcaaa ATAAAAC tagtcagtcg 519 1.000000 9-1 721 acaaaagaaa AAGAAAA ctggaaaaag 727 1.000000 10-1 345 gatatcgcat AAAAAAA tggccagcta 351 1.000000 11-1 548 attttgtgtt CGAAAAA gggaagattg 554 1.000000 12-1 316 acaggatgaa AAAAAAA agacattgca 322 1.000000 13-1 430 aaattgtttt AAAAGAA acgaatttgc 436 1.000000 14-1 674 cagcccagta ATAAAAC atttacatat 680 1.000000 15-1 172 tcaaaatagc AAAAAAC gcAAAAAGCa 178 1.000000 16-1 229 aaagcttctg AAAAAGA gaaaagtgag 235 1.000000 17-1 629 gtaatgactt AAAACAA gcgactatcg 635 1.000000 18-1 572 gtctatatta AAAAAAA ggcagcataa 578 1.000000 19-1 16 caacagcaat ACAATCA acaaggccAA 22 1.000000 20-1 713 aaaccaaacc AAAACAA aacaaaaACA 719 1.000000 21-1 786 gTAAAAAGGg AAAAAAA gcagatat 792 1.000000 22-1 650 gctcacactt GCAAAAA gcatataaaa 656 1.000000 23-1 435 aaaatcaaga AAAAAAC ctgattatgc 441 1.000000 24-1 535 tcaggtgttt ACCAGAA gtgtatggta 541 1.000000 25-1 732 caagctctat AAAATCA agatcaagca 738 1.000000 26-1 511 tgaattatcc AAGAAAC gtgcggcagg 517 1.000000 27-1 63 gaaaagtcac AAAAAAC ccccggggga 69 1.000000 28-1 400 CTGAttatta AAAACAA acgtaaactc 406 1.000000 29-1 257 aaaAAAAAAA AAAAAAA aatgttctca 263 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 544 550 547 -w 1.000000 >2 356 362 359 -w 1.000000 >3 35 41 38 -w 1.000000 >4 345 351 348 -w 1.000000 >5 345 351 348 -w 1.000000 >6 212 218 215 -w 1.000000 >7 622 628 625 -w 1.000000 >8 513 519 516 -w 1.000000 >9 721 727 724 -w 1.000000 >10 345 351 348 -w 1.000000 >11 548 554 551 -w 1.000000 >12 316 322 319 -w 1.000000 >13 430 436 433 -w 1.000000 >14 674 680 677 -w 1.000000 >15 172 178 175 -w 1.000000 >16 229 235 232 -w 1.000000 >17 629 635 632 -w 1.000000 >18 572 578 575 -w 1.000000 >19 16 22 19 -w 1.000000 >20 713 719 716 -w 1.000000 >21 786 792 789 -w 1.000000 >22 650 656 653 -w 1.000000 >23 435 441 438 -w 1.000000 >24 535 541 538 -w 1.000000 >25 732 738 735 -w 1.000000 >26 511 517 514 -w 1.000000 >27 63 69 66 -w 1.000000 >28 400 406 403 -w 1.000000 >29 257 263 260 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 84 . . . 0.9 2 69 . . . 0.4 3 84 . . . 0.9 4 94 . . . 1.3 5 72 . . . 0.5 6 84 . . . 0.9 7 69 . . . 0.6 non- site 31 . . . site 84 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 12 . . . 9 2 8 . . . 4 3 12 . . . 9 4 15 . . . 13 5 9 . . . 5 6 12 . . . 9 7 8 . . . 6 site 12 . . . 9 Weighted motif model: POS A C G T Prob 1 0.843339 0.048934 0.079616 0.028111 0.921096 2 0.686599 0.111630 0.079616 0.122155 0.434050 3 0.843339 0.048934 0.079616 0.028111 0.921096 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.717947 0.111630 0.079616 0.090807 0.519233 6 0.843339 0.080282 0.048268 0.028111 0.919828 7 0.686599 0.205674 0.016920 0.090807 0.582940 Conservedness in bits: 5.572777 Conservedness in prob: 9.394667 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 209 bits Missing position information = 150 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.79 bits MOTIF H 1-1 689 tgagtttacg TTTGTTTTT aataatcagt 697 1.000000 2-1 217 aaccaccatt TTTTTTTGC tccaaaggcg 225 1.000000 3-1 224 tactgacata TCTCATTTT gagatacaac 232 1.000000 4-1 648 aaaTTTGGTT TTTATTTTT ttaagcaaca 656 1.000000 5-1 529 tttaaaactt TTTTTTTTT gaaagtccTT 537 1.000000 6-1 587 ttttactttt TTTTTTTTT gtttctgcat 595 1.000000 7-1 64 gatatattag TATGTTGCT tttctgcaat 72 1.000000 8-1 427 catagtgata TTTGTTTGT ttaccatttt 435 1.000000 9-1 580 aggtttggct TCCTTTTAG cactttctct 588 1.000000 10-1 384 agcccagcta TATTTTTAT agcgtctttt 392 1.000000 11-1 394 ctTCAGTAAt TTTTTTTTT taatttatTT 402 1.000000 12-1 482 gcaactttct TTTGTTTGC atatcttttt 490 1.000000 13-1 132 caagttacat TCTTTGTAT aacgaacgtt 140 1.000000 14-1 79 tttattgttg TCTTTTTGC ttgttggaat 87 1.000000 15-1 706 CAAGAGAgct TCTTTTTTT atgctatcga 714 1.000000 16-1 273 gctgttcact TGTTTTTAT cgtatatcct 281 1.000000 17-1 230 tttcttttcc TTTTTTTAC aatagctaaT 238 1.000000 18-1 198 gcaccttacc TATTTTTAT caaaaaagta 206 1.000000 19-1 402 TTTGTTTacg TATTTGTTT atatatataa 410 1.000000 20-1 634 tacatatatc TGCTTTTTT tcccttttta 642 1.000000 21-1 688 cggcttagcc TGTTTTTGT TTTTGTTTTt 696 1.000000 22-1 498 cagcggaata TCTTTGTTT actcattaaa 506 1.000000 23-1 660 gttaacgttt TTTTTTTTT ttttaaaggc 668 1.000000 24-1 240 catgctatta TATTATTCT tacgtaaaaa 248 1.000000 25-1 241 tcaacgccag TATTTTTCC tgcggatact 249 1.000000 26-1 719 tcaagaatat TTCGTTTAT catatccaag 727 1.000000 27-1 720 agtatacatt TCTTCTTCT tcttctctct 728 1.000000 28-1 295 gctgatacca TCCTTTTAT tctctacacc 303 1.000000 29-1 326 tctcatcggt TTCGTTTGT tgcttaaagg 334 1.000000 sites: * ***** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 689 697 693 -w 1.000000 >2 217 225 221 -w 1.000000 >3 224 232 228 -w 1.000000 >4 648 656 652 -w 1.000000 >5 529 537 533 -w 1.000000 >6 587 595 591 -w 1.000000 >7 64 72 68 -w 1.000000 >8 427 435 431 -w 1.000000 >9 580 588 584 -w 1.000000 >10 384 392 388 -w 1.000000 >11 394 402 398 -w 1.000000 >12 482 490 486 -w 1.000000 >13 132 140 136 -w 1.000000 >14 79 87 83 -w 1.000000 >15 706 714 710 -w 1.000000 >16 273 281 277 -w 1.000000 >17 230 238 234 -w 1.000000 >18 198 206 202 -w 1.000000 >19 402 410 406 -w 1.000000 >20 634 642 638 -w 1.000000 >21 688 696 692 -w 1.000000 >22 498 506 502 -w 1.000000 >23 660 668 664 -w 1.000000 >24 240 248 244 -w 1.000000 >25 241 249 245 -w 1.000000 >26 719 727 723 -w 1.000000 >27 720 728 724 -w 1.000000 >28 295 303 299 -w 1.000000 >29 326 334 330 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 94 1.3 3 . . . 78 0.9 4 . . . 69 0.6 5 . . . 84 0.9 6 . . . 84 1.0 7 . . . 91 1.2 9 . . . 75 0.7 non- site . . . 30 site . . . 87 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 15 13 3 . . . 10 9 4 . . . 8 6 5 . . . 12 9 6 . . . 12 10 7 . . . 14 12 9 . . . 10 7 site . . . 13 10 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.016920 0.937202 1.282005 3 0.028292 0.174326 0.016920 0.780462 0.859862 4 0.059639 0.048934 0.205008 0.686418 0.579076 5 0.090987 0.048934 0.016920 0.843158 0.903181 6 0.028292 0.017586 0.110964 0.843158 0.978671 7 0.028292 0.017586 0.048268 0.905854 1.151948 9 0.028292 0.174326 0.048268 0.749114 0.738237 Conservedness in bits: 6.492979 Conservedness in prob: 9.807279 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 247 bits Missing position information = 168 bits Log-likelihood ratio statistic = 78 bits Degrees of freedom = 21 Information per parameter = 3.75 bits MOTIF I 1-1 790 ttcggtgtag AGAATAAA agg 797 1.000000 2-1 670 ctacaatgat ATAAAAGG ctttgtcttg 677 1.000000 3-1 596 acttgtaaat AGAAAAAT gatgttctaa 603 1.000000 4-1 132 ttgtgctatc TCAAGAAT tgcattttgt 139 1.000000 5-1 793 aaaaaaaaaa AAAAAAAA 800 1.000000 6-1 8 gggcaaa ATAAAAAA ggaaaaagag 15 1.000000 7-1 43 gaggcaagag TAAAAAGT tatgatatat 50 1.000000 8-1 331 cacttttcca AGAATAGT aattgcccta 338 1.000000 9-1 40 taaaagacga GAAAAAAT aaAAACAACg 47 1.000000 10-1 722 attctccttt ATAAAAGT aagacccggt 729 1.000000 11-1 575 ctccaaacgc AAATAAGG aggaaacccg 582 1.000000 12-1 701 tcttatctat TCAAAAAA tttctaTTTA 708 1.000000 13-1 80 aaagatatgt TGAAAAGC gacgggcaac 87 1.000000 14-1 330 aagtgataac TCAAAAAA caagagtaca 337 1.000000 15-1 115 ccccagtcgt ACAAAAGC acctctgcat 122 1.000000 16-1 130 GAAGCAAaaa GGAAAATC cattctcaca 137 1.000000 17-1 175 agactggtct ACCAAAGG aataagatca 182 1.000000 18-1 498 ataaggaatt TAAAAAGT acttcatcga 505 1.000000 19-1 645 gtaatttgaa ACAAATAA cgtaattctc 652 1.000000 20-1 727 CAAaacaaaa ACAAAAAC aaaaacaggc 734 1.000000 21-1 777 gctttccgcg TAAAAAGG gAAAAAAAgc 784 1.000000 22-1 140 taggaacata AAAATAAA tatctcgcgc 147 1.000000 23-1 27 atatattata TAAAATAT gaatcatact 34 1.000000 24-1 765 aaagcacact ACAAAAAT acgctatcat 772 1.000000 25-1 17 gttgcctaca ATAAAAGC aattataact 24 1.000000 26-1 322 agtatttaaa AGAAAAGA gacgaaccca 329 1.000000 27-1 700 tactgcttgt TTAAATAC gcagtataca 707 1.000000 28-1 386 tagtagaatg AAAACTGA ttattaAAAA 393 1.000000 29-1 529 caacagcact GAAAATAG ttacaaacaa 536 1.000000 sites: * ****** 5 (29 sites in 29 sequences) Conservedness in sites: >1 790 797 793 -w 1.000000 >2 670 677 673 -w 1.000000 >3 596 603 599 -w 1.000000 >4 132 139 135 -w 1.000000 >5 793 800 796 -w 1.000000 >6 8 15 11 -w 1.000000 >7 43 50 46 -w 1.000000 >8 331 338 334 -w 1.000000 >9 40 47 43 -w 1.000000 >10 722 729 725 -w 1.000000 >11 575 582 578 -w 1.000000 >12 701 708 704 -w 1.000000 >13 80 87 83 -w 1.000000 >14 330 337 333 -w 1.000000 >15 115 122 118 -w 1.000000 >16 130 137 133 -w 1.000000 >17 175 182 178 -w 1.000000 >18 498 505 501 -w 1.000000 >19 645 652 648 -w 1.000000 >20 727 734 730 -w 1.000000 >21 777 784 780 -w 1.000000 >22 140 147 143 -w 1.000000 >23 27 34 30 -w 1.000000 >24 765 772 768 -w 1.000000 >25 17 24 20 -w 1.000000 >26 322 329 325 -w 1.000000 >27 700 707 703 -w 1.000000 >28 386 393 389 -w 1.000000 >29 529 536 532 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 56 . . . 0.3 3 91 . . . 1.1 4 91 . . . 1.1 5 78 . . . 0.7 6 78 . . . 0.8 7 50 . 42 . 0.6 8 . . . . 0.0 non- site 31 . . . site 71 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 5 . . . 3 3 14 . . . 11 4 14 . . . 11 5 10 . . . 7 6 10 . . . 8 7 3 . 5 . 6 8 . . . . 0 site 9 . . . 5 Weighted motif model: POS A C G T Prob 1 0.561207 0.017586 0.110964 0.310243 0.335234 3 0.906034 0.048934 0.016920 0.028111 1.144005 4 0.906034 0.017586 0.016920 0.059459 1.136019 5 0.780643 0.048934 0.048268 0.122155 0.681046 6 0.780643 0.017586 0.016920 0.184851 0.779162 7 0.498511 0.017586 0.424444 0.059459 0.641396 8 0.310423 0.205674 0.173660 0.310243 0.001165 Conservedness in bits: 4.718029 Conservedness in prob: 7.865365 Concensus sequence: AAAAAGC Complete log-likelihood ratio = 178 bits Missing position information = 141 bits Log-likelihood ratio statistic = 36 bits Degrees of freedom = 21 Information per parameter = 1.75 bits MOTIF J 1-1 756 tagaccttgt AAACAGC ataggagtaa 762 1.000000 2-1 642 ggaagcccac AAATAAC TGCAACAGcg 648 1.000000 3-1 766 tcaatagtgc AAAAATA ggtaactaac 772 1.000000 4-1 708 atactgctca AAAAATC ttcataacat 714 1.000000 5-1 768 atagtaaaca AACAAAC aaacaaacaa 774 1.000000 6-1 39 ggtagttgag AAAAAAA ccggaaagga 45 1.000000 7-1 140 tGCAGAAAca AAAAAAA aaaaagtaaa 146 1.000000 8-1 108 ctagcaggtc AAACAAC tcatcttgtt 114 1.000000 9-1 50 GAAAAAATaa AAACAAC ggcaccagaa 56 1.000000 10-1 743 acccggtgct AAACAAC ctgatccgac 749 1.000000 11-1 212 ctattccaat AAAGTTA aactgtgata 218 1.000000 12-1 120 gaccaagtta GAAGATC gtctaggttt 126 1.000000 13-1 743 ctcgtcgaag AAAACAC acttttatag 749 1.000000 14-1 723 catgtaaagc AAAAAAC tagaacacta 729 1.000000 15-1 181 cAAAAAACgc AAAAAGC ataccgctgg 187 1.000000 16-1 509 cgaggcgtcg AAATAAA tcaaataaga 515 1.000000 17-1 296 ttcaatttat AAATATC ttaattttaa 302 1.000000 18-1 446 aaaaatagtg AGAGAAA tcacgcgctt 452 1.000000 19-1 31 CAacaaggcc AAAACAA ccagcagcaa 37 1.000000 20-1 658 ttttacgcgg AAAGCGC aaatttcctc 664 1.000000 21-1 1 AAAATGC cgcgaggtcg 7 1.000000 22-1 399 attttccaaa AAGGTTC ctgtgactat 405 1.000000 23-1 53 ctaagtggtg GAAGCGC ggaatctcgg 59 1.000000 24-1 97 gacctttgtg GAAAATG acaagattat 103 1.000000 25-1 655 ctaaatgcaa AAAAAAA aatgattcga 661 1.000000 26-1 603 gtccagcata AAAGAAA gcgagactac 609 1.000000 27-1 25 ataatgaact GAGAAGG tacgctataa 31 1.000000 28-1 153 gaaattctgg AAAAATC ccttaataaa 159 1.000000 29-1 250 aaaaaaaaaa AAAAAAA AAAAAAAaat 256 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 756 762 759 -w 1.000000 >2 642 648 645 -w 1.000000 >3 766 772 769 -w 1.000000 >4 708 714 711 -w 1.000000 >5 768 774 771 -w 1.000000 >6 39 45 42 -w 1.000000 >7 140 146 143 -w 1.000000 >8 108 114 111 -w 1.000000 >9 50 56 53 -w 1.000000 >10 743 749 746 -w 1.000000 >11 212 218 215 -w 1.000000 >12 120 126 123 -w 1.000000 >13 743 749 746 -w 1.000000 >14 723 729 726 -w 1.000000 >15 181 187 184 -w 1.000000 >16 509 515 512 -w 1.000000 >17 296 302 299 -w 1.000000 >18 446 452 449 -w 1.000000 >19 31 37 34 -w 1.000000 >20 658 664 661 -w 1.000000 >21 1 7 4 -w 1.000000 >22 399 405 402 -w 1.000000 >23 53 59 56 -w 1.000000 >24 97 103 100 -w 1.000000 >25 655 661 658 -w 1.000000 >26 603 609 606 -w 1.000000 >27 25 31 28 -w 1.000000 >28 153 159 156 -w 1.000000 >29 250 256 253 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 81 . . . 0.9 2 91 . . . 1.1 3 84 . . . 0.9 4 50 . 24 . 0.2 5 72 . . . 0.6 6 50 . . . 0.3 7 . 55 . . 0.7 non- site 31 . . . site 69 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 11 . . . 9 2 14 . . . 11 3 12 . . . 9 4 3 . 1 . 2 5 9 . . . 6 6 3 . . . 3 7 . 8 . . 7 site 8 . . . 5 Weighted motif model: POS A C G T Prob 1 0.811991 0.017586 0.142312 0.028111 0.910273 2 0.906034 0.017586 0.048268 0.028111 1.144756 3 0.843339 0.048934 0.079616 0.028111 0.921096 4 0.498511 0.142978 0.236356 0.122155 0.194300 5 0.717947 0.142978 0.016920 0.122155 0.581271 6 0.498511 0.017586 0.205008 0.278895 0.265075 7 0.341771 0.550502 0.079616 0.028111 0.682001 Conservedness in bits: 4.698773 Conservedness in prob: 8.437823 Concensus sequence: AAAAAAC Complete log-likelihood ratio = 178 bits Missing position information = 132 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.18 bits seed 9 time: 22 seconds (0.37 minutes) MOTIF A 1-1 187 atggatttgg AGAAAAA cagaagcttc 193 1.000000 2-1 793 ctcgcctaat TGAAAGA g 799 1.000000 3-1 596 acttgtaaat AGAAAAA tgatgttcta 602 1.000000 4-1 760 gctttttgag AGAATAA ccctttggag 766 1.000000 5-1 345 ttgggatgat AAAAAAA tcaCCCTGCA 351 1.000000 6-1 216 gcccgagaaa AAAGCAG cgactgcacT 222 1.000000 7-1 164 aaaaatttcg AGTAAAA gaattttgag 170 1.000000 8-1 221 gttgttttga AGTCAGA ttcgtatgat 227 1.000000 9-1 23 ttattgttta AAAGAGA taaaagacga 29 1.000000 10-1 725 ctcctttata AAAGTAA gacccggtgc 731 1.000000 11-1 449 attatgcagc CATAAGA ggaggctgga 455 1.000000 12-1 215 gtgatatcct GGAGAGA ctacatgact 221 1.000000 13-1 399 ttcgtctcaa TAGAAAA agtgaaacag 405 1.000000 14-1 651 tgaaaaatgt TTTAAAA atgtttcagc 657 1.000000 15-1 326 ttaatattcc AGAAAAA gaaatTCCTT 332 1.000000 16-1 327 gttcgcttta AGGAAGA tctcataagg 333 1.000000 17-1 617 tattaaaaca TAGTAAT gacttaaaac 623 1.000000 18-1 572 gtctatatta AAAAAAA ggcagcatAA 578 1.000000 19-1 254 ccaatgagta CGGAAGA ccgcaatacg 260 1.000000 20-1 693 aagccaaacc AAAATAA atcaaaccaa 699 1.000000 21-1 655 gtgttgtata CGTATGA gcggTTTTAA 661 1.000000 22-1 297 actctccaat TGGAAAT aaggtaataa 303 1.000000 23-1 344 tgaaagtaac AGGAAGA agtgatgctg 350 1.000000 24-1 28 gaaaaagcca AAGGAAA atccttgggc 34 1.000000 25-1 169 ttgatgaccc AAAAAGA gatgaaagta 175 1.000000 26-1 605 ccagcataaa AGAAAGC gagactacaa 611 1.000000 27-1 371 acataagtag AAGATAA ttcgttgcgc 377 1.000000 28-1 369 gcaattgcgc AAGAAAA tagtagaatg 375 1.000000 29-1 258 AAAAAAAAAa AAAAAAA atgttctcaa 264 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 187 193 190 -w 1.000000 >2 793 799 796 -w 1.000000 >3 596 602 599 -w 1.000000 >4 760 766 763 -w 1.000000 >5 345 351 348 -w 1.000000 >6 216 222 219 -w 1.000000 >7 164 170 167 -w 1.000000 >8 221 227 224 -w 1.000000 >9 23 29 26 -w 1.000000 >10 725 731 728 -w 1.000000 >11 449 455 452 -w 1.000000 >12 215 221 218 -w 1.000000 >13 399 405 402 -w 1.000000 >14 651 657 654 -w 1.000000 >15 326 332 329 -w 1.000000 >16 327 333 330 -w 1.000000 >17 617 623 620 -w 1.000000 >18 572 578 575 -w 1.000000 >19 254 260 257 -w 1.000000 >20 693 699 696 -w 1.000000 >21 655 661 658 -w 1.000000 >22 297 303 300 -w 1.000000 >23 344 350 347 -w 1.000000 >24 28 34 31 -w 1.000000 >25 169 175 172 -w 1.000000 >26 605 611 608 -w 1.000000 >27 371 377 374 -w 1.000000 >28 369 375 372 -w 1.000000 >29 258 264 261 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 66 . . . 0.4 2 47 . 46 . 0.7 3 50 . 30 . 0.3 4 72 . . . 0.6 5 75 . . . 0.7 6 59 . 36 . 0.7 7 81 . . . 0.8 non- site 31 . . . site 67 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 7 . . . 4 2 3 . 6 . 7 3 3 . 2 . 3 4 9 . . . 6 5 9 . . . 7 6 6 . 3 . 7 7 11 . . . 8 site 8 . . . 5 Weighted motif model: POS A C G T Prob 1 0.655251 0.111630 0.048268 0.184851 0.384110 2 0.467163 0.017586 0.455792 0.059459 0.660454 3 0.498511 0.017586 0.299052 0.184851 0.345410 4 0.717947 0.048934 0.173660 0.059459 0.610012 5 0.749295 0.048934 0.016920 0.184851 0.657065 6 0.592555 0.017586 0.361748 0.028111 0.739264 7 0.811991 0.048934 0.048268 0.090807 0.771914 Conservedness in bits: 4.168229 Conservedness in prob: 7.866462 Concensus sequence: AGGAAGA Complete log-likelihood ratio = 156 bits Missing position information = 114 bits Log-likelihood ratio statistic = 41 bits Degrees of freedom = 21 Information per parameter = 1.95 bits MOTIF B 1-1 560 TTTATatcgc CTTTCGCTCT tttgtatgta 569 1.000000 2-1 725 gtatgtgttg TTTTTATTTC gagtaaattt 734 1.000000 3-1 330 ccctacaggg CTTTCTTTTT aAAACAGGat 339 1.000000 4-1 57 taatcgtacg TTTACCTTGT ggcagcacta 66 1.000000 5-1 553 tccttctcgc TTTAGGATTT tttcccatta 562 1.000000 6-1 367 ttacacacat CTTTTGGTGT tcattcaagg 376 1.000000 7-1 713 accgtactct TTTTCCTTTT ttattttgcc 722 1.000000 8-1 631 tttaggcggc TTTTCCGTTT ggcTGAAGCA 640 1.000000 9-1 244 attAAACATG TTTTCTATTT gccgaataag 253 1.000000 10-1 173 gcacaacaga ATTTCGTTTT gtagtatagt 182 1.000000 11-1 394 Cttcagtaat TTTTTTTTTT aatttatttt 403 1.000000 12-1 652 GAAAAtaaaa CTATCCTTTT tgttcactct 661 1.000000 13-1 768 agcggaaccg CTTTCTTTAT ttgaattgtc 777 1.000000 14-1 237 taaaagcgag TTTTTGATTT agaaacacca 246 1.000000 15-1 707 aagagagctt CTTTTTTTAT gctatcgaac 716 1.000000 16-1 394 acaggcgtga TTTTCTGTCT aaacattgcc 403 1.000000 17-1 213 taacattttt CTTTTCTTTT ctttTCCTTT 222 1.000000 18-1 762 gaagtataca TATTCTGGTT caacaacTGT 771 1.000000 19-1 304 cagcacgaat CCTTCAATTT ttctggcaac 313 1.000000 20-1 640 tatctgcttt TTTTCCCTTT ttacgcggaa 649 1.000000 21-1 696 cctgtttttg TTTTTGTTTT TGTTTTGTTt 705 1.000000 22-1 372 gttgtggctt TTTTCGGTAA tagtttaatt 381 1.000000 23-1 659 tgttaacgtt TTTTTTTTTT ttttaaaggc 668 1.000000 24-1 559 gtacatggtg CTTTCCTTAT gctcactatt 568 1.000000 25-1 539 tttgtgttag TATTTTGTGT tttttacaac 548 1.000000 26-1 357 tcgcgaacgg TATTTGATAT atgctagaaa 366 1.000000 27-1 740 CTTCTCtctt CTTTCCTTCC tcgaagagtc 749 1.000000 28-1 560 ttttcacggg ATTTTCGTTT aggtgaaaat 569 1.000000 29-1 606 ttatataccc TTTTCGTGGT ccTTTTTCCT 615 1.000000 sites: ***** * * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 560 569 564 -w 1.000000 >2 725 734 729 -w 1.000000 >3 330 339 334 -w 1.000000 >4 57 66 61 -w 1.000000 >5 553 562 557 -w 1.000000 >6 367 376 371 -w 1.000000 >7 713 722 717 -w 1.000000 >8 631 640 635 -w 1.000000 >9 244 253 248 -w 1.000000 >10 173 182 177 -w 1.000000 >11 394 403 398 -w 1.000000 >12 652 661 656 -w 1.000000 >13 768 777 772 -w 1.000000 >14 237 246 241 -w 1.000000 >15 707 716 711 -w 1.000000 >16 394 403 398 -w 1.000000 >17 213 222 217 -w 1.000000 >18 762 771 766 -w 1.000000 >19 304 313 308 -w 1.000000 >20 640 649 644 -w 1.000000 >21 696 705 700 -w 1.000000 >22 372 381 376 -w 1.000000 >23 659 668 663 -w 1.000000 >24 559 568 563 -w 1.000000 >25 539 548 543 -w 1.000000 >26 357 366 361 -w 1.000000 >27 740 749 744 -w 1.000000 >28 560 569 564 -w 1.000000 >29 606 615 610 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 33 . 56 0.5 2 . . . 81 0.8 3 . . . 91 1.1 4 . . . 87 1.0 5 . 55 . 37 0.7 8 . . . 87 1.1 10 . . . 84 0.9 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 3 . 5 5 2 . . . 11 8 3 . . . 14 11 4 . . . 13 10 5 . 8 . 1 7 8 . . . 13 11 10 . . . 12 9 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.090987 0.331066 0.016920 0.561027 0.518830 2 0.122335 0.048934 0.016920 0.811810 0.810076 3 0.059639 0.017586 0.016920 0.905854 1.143116 4 0.090987 0.017586 0.016920 0.874506 1.030802 5 0.028292 0.550502 0.048268 0.372939 0.739541 8 0.028292 0.017586 0.079616 0.874506 1.055349 10 0.059639 0.080282 0.016920 0.843158 0.917629 Conservedness in bits: 6.215344 Conservedness in prob: 9.758113 Concensus sequence: TTTTCTT Complete log-likelihood ratio = 234 bits Missing position information = 157 bits Log-likelihood ratio statistic = 76 bits Degrees of freedom = 21 Information per parameter = 3.65 bits MOTIF C 1-1 757 agaccttgta AACAGCA taggagtaaa 763 1.000000 2-1 748 taaatttaga AACAGCA agcctcatca 754 1.000000 3-1 395 ttttctcgag AACAGCA atgcccacag 401 1.000000 4-1 669 aagcaacatc AGCTGCA ctagttgagc 675 1.000000 5-1 355 AAAAAAAtca CCCTGCA ttgcctcttt 361 1.000000 6-1 511 tacctacaag CAATGCA taagctcttg 517 1.000000 7-1 580 acctctaaat AACAGCA tgatgcaaca 586 1.000000 8-1 644 TCCGTTTggc TGAAGCA actttgaaac 650 1.000000 9-1 444 ccctgaacgg AACAGCG cctaaaaata 450 1.000000 10-1 328 gctgtaaaaa ACCAGCA gatatcgcat 334 1.000000 11-1 161 tatgataatt ACCAGCA atactaatgc 167 1.000000 12-1 335 acattgcact TGCATCA ctgtaggagc 341 1.000000 13-1 82 agatatgttg AAAAGCG acgggcaacc 88 1.000000 14-1 584 tttcattcgg TGCAGCA ttttaattca 590 1.000000 15-1 259 agattcaaaa ACCTGCA aagTTTGTTT 265 1.000000 16-1 76 AAagaactag CCAAACA gttacaggaa 82 1.000000 17-1 417 gtagctgtct AACAGCA ccacttagca 423 1.000000 18-1 587 AAggcagcat AAGAGCA actcactgca 593 1.000000 19-1 235 cagaatggtc AACAGCA atccaatgag 241 1.000000 20-1 717 caaaccaaaa CAAAACA AAAACAAAAa 723 1.000000 21-1 291 acgctgttgc AGCAGCG agtccagctc 297 1.000000 22-1 747 tcaagtcagt AACAACA aatacccatc 753 1.000000 23-1 764 tgtgtagatt AGCAGCA gacactcctt 770 1.000000 24-1 45 atccttgggc CACAGCA gaatatgatt 51 1.000000 25-1 379 ttagggcagt ACCAGCA aacgctgcag 385 1.000000 26-1 625 actacaataa TACAGCA aggatggggt 631 1.000000 27-1 481 cgagacgggg CCCAGCA gtcttttttt 487 1.000000 28-1 724 gacgaatgtg ACCAACA taagtcctta 730 1.000000 29-1 520 ggttctttgc AACAGCA ctgaaaatag 526 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 757 763 760 -w 1.000000 >2 748 754 751 -w 1.000000 >3 395 401 398 -w 1.000000 >4 669 675 672 -w 1.000000 >5 355 361 358 -w 1.000000 >6 511 517 514 -w 1.000000 >7 580 586 583 -w 1.000000 >8 644 650 647 -w 1.000000 >9 444 450 447 -w 1.000000 >10 328 334 331 -w 1.000000 >11 161 167 164 -w 1.000000 >12 335 341 338 -w 1.000000 >13 82 88 85 -w 1.000000 >14 584 590 587 -w 1.000000 >15 259 265 262 -w 1.000000 >16 76 82 79 -w 1.000000 >17 417 423 420 -w 1.000000 >18 587 593 590 -w 1.000000 >19 235 241 238 -w 1.000000 >20 717 723 720 -w 1.000000 >21 291 297 294 -w 1.000000 >22 747 753 750 -w 1.000000 >23 764 770 767 -w 1.000000 >24 45 51 48 -w 1.000000 >25 379 385 382 -w 1.000000 >26 625 631 628 -w 1.000000 >27 481 487 484 -w 1.000000 >28 724 730 727 -w 1.000000 >29 520 526 523 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 62 . . . 0.4 2 50 27 . . 0.4 3 . 74 . . 1.1 4 81 . . . 0.8 5 . . 77 . 1.2 6 . 93 . . 1.8 7 84 . . . 1.0 non- site 31 19 . . site 46 32 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 6 . . . 4 2 3 1 . . 4 3 . 14 . . 11 4 11 . . . 8 5 . . 16 . 12 6 . 21 . . 18 7 12 . . . 10 site 3 2 . . 4 Weighted motif model: POS A C G T Prob 1 0.623903 0.205674 0.016920 0.153503 0.430606 2 0.498511 0.268370 0.205008 0.028111 0.396945 3 0.185031 0.738589 0.048268 0.028111 1.097539 4 0.811991 0.017586 0.016920 0.153503 0.848992 5 0.153683 0.017586 0.769271 0.059459 1.216184 6 0.028292 0.926677 0.016920 0.028111 1.840745 7 0.843339 0.017586 0.110964 0.028111 0.972039 Conservedness in bits: 6.803051 Conservedness in prob: 10.745223 Concensus sequence: AACAGCA Complete log-likelihood ratio = 254 bits Missing position information = 184 bits Log-likelihood ratio statistic = 70 bits Degrees of freedom = 21 Information per parameter = 3.35 bits MOTIF D 1-1 687 CTTGAGTtta CGTTTGTTTTT aataatcagt 697 1.000000 2-1 472 AAAgggatcg TGTTGTTATTC acggcaacca 482 1.000000 3-1 665 tggtatttcg CGTTTATATTA cggatgcaag 675 1.000000 4-1 722 atcttcataa CATTATTTTTC ggttccacag 732 1.000000 5-1 714 GTCTgttaaa TGTTTTTTATC tcaggTTCTT 724 1.000000 6-1 589 ttactttttt TTTTTTTGTTT ctgcattctc 599 1.000000 7-1 66 tatattagta TGTTGCTTTTC tgcAATTGTT 76 1.000000 8-1 149 ttcagtgtag TATTTCTCTGT gataacggtt 159 1.000000 9-1 272 agcataaacg TATCATTGTTC ctttcccttt 282 1.000000 10-1 50 ctacagctcg TGTTCTTCTTG cagcacatca 60 1.000000 11-1 502 gagcatgtac CGTTGATTTTG aagagccaat 512 1.000000 12-1 378 TTCATTgttg CTTTATTTTTC caagtaagga 388 1.000000 13-1 711 ctagagtgga TATTGATATTT ctcaaacaag 721 1.000000 14-1 535 cgacagctta TCTTAATTTTC gccaataggt 545 1.000000 15-1 457 tggctccgag GATTGGTCACC cagaaacagg 467 1.000000 16-1 354 acaccgactc TCTAATTATTC tggagatatg 364 1.000000 17-1 355 atgcctactc TTTTGCTTTTT catatcatga 365 1.000000 18-1 779 GTTcaacaac TGTTTCTATTC aaaaactttg 789 1.000000 19-1 479 gatgcctcaa TCCTTCTTTTG cttccatatt 489 1.000000 20-1 613 acatctctgt CTTTTCTGTTG tacatatatc 623 1.000000 21-1 474 atctatgaga TGTTGGTGTTG gttatgtaat 484 1.000000 22-1 720 atcttaggtt TATGCCTTTTC tggttctcaa 730 1.000000 23-1 135 gggttttgtc TCATGTTGTTC gttttgttat 145 1.000000 24-1 722 agtttccacg TCTTTCTGTAT tttcatacct 732 1.000000 25-1 596 CTtgcataga TGCTACTATTC tctgacagta 606 1.000000 26-1 752 GGTGTGTatg CATTGATATTC ccattaggat 762 1.000000 27-1 659 gatcaaaaca CTTACATTTTG aggcctaccg 669 1.000000 28-1 271 aactctgtag TTCTGGGATTC aaagctgata 281 1.000000 29-1 567 gttcccgcct GCTTATTCTTT ttccagctct 577 1.000000 sites: * ** * *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 687 697 692 -w 1.000000 >2 472 482 477 -w 1.000000 >3 665 675 670 -w 1.000000 >4 722 732 727 -w 1.000000 >5 714 724 719 -w 1.000000 >6 589 599 594 -w 1.000000 >7 66 76 71 -w 1.000000 >8 149 159 154 -w 1.000000 >9 272 282 277 -w 1.000000 >10 50 60 55 -w 1.000000 >11 502 512 507 -w 1.000000 >12 378 388 383 -w 1.000000 >13 711 721 716 -w 1.000000 >14 535 545 540 -w 1.000000 >15 457 467 462 -w 1.000000 >16 354 364 359 -w 1.000000 >17 355 365 360 -w 1.000000 >18 779 789 784 -w 1.000000 >19 479 489 484 -w 1.000000 >20 613 623 618 -w 1.000000 >21 474 484 479 -w 1.000000 >22 720 730 725 -w 1.000000 >23 135 145 140 -w 1.000000 >24 722 732 727 -w 1.000000 >25 596 606 601 -w 1.000000 >26 752 762 757 -w 1.000000 >27 659 669 664 -w 1.000000 >28 271 281 276 -w 1.000000 >29 567 577 572 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 27 . 62 0.6 3 . . . 81 0.8 4 . . . 81 0.8 7 . . . 91 1.2 9 . . . 87 1.0 10 . . . 84 0.9 11 . 49 . . 0.5 non- site . . . 30 site . . . 77 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 1 . 6 6 3 . . . 11 8 4 . . . 11 8 7 . . . 14 12 9 . . . 13 10 10 . . . 12 9 11 . 7 . . 5 site . . . 10 7 Weighted motif model: POS A C G T Prob 1 0.028292 0.268370 0.079616 0.623723 0.562698 3 0.059639 0.111630 0.016920 0.811810 0.841204 4 0.090987 0.048934 0.048268 0.811810 0.777993 7 0.028292 0.017586 0.048268 0.905854 1.151948 9 0.090987 0.017586 0.016920 0.874506 1.030802 10 0.059639 0.048934 0.048268 0.843158 0.887004 11 0.059639 0.487806 0.205008 0.247547 0.457891 Conservedness in bits: 5.709539 Conservedness in prob: 9.629182 Concensus sequence: TTTTTTC Complete log-likelihood ratio = 212 bits Missing position information = 185 bits Log-likelihood ratio statistic = 26 bits Degrees of freedom = 21 Information per parameter = 1.26 bits MOTIF E 1-1 545 atcccgtgaa AAAAATTTAT atcgcCTTTC 554 1.000000 2-1 424 gtcatagcct ATTGGTTTGT gccgttctgc 433 1.000000 3-1 533 attgtatcac GGTGGTTTCA gtctgtcatg 542 1.000000 4-1 648 aaatttggtt TTTATTTTTT taagcaacat 657 1.000000 5-1 698 tatatatttg TAAAATGTCT gttaaaTGTT 707 1.000000 6-1 625 ttttagatga TGCGGTTTTT tacagggcat 634 1.000000 7-1 80 GCTTTTCtgc AATTGTTTCA atgccctgta 89 1.000000 8-1 755 tattttaata TTTGTTTTGG catttgaaac 764 1.000000 9-1 587 gcttcctttt AGCACTTTCT ctctcaccct 596 1.000000 10-1 664 gTGCTTCTTa AGTGTTTTTT tctttagtct 673 1.000000 11-1 699 gttttaacaa TACGATTTAA tctcggagta 708 1.000000 12-1 621 cacagtatat AATATATTCA aattattAAA 630 1.000000 13-1 607 CTTCTTTtta GTTGACTTTT ttgagacgtt 616 1.000000 14-1 64 gtcatcaata CCACGTTTAT tgttgtcttt 73 1.000000 15-1 269 ACCTGCAaag TTTGTTTTTA taattttggc 278 1.000000 16-1 270 agagctgttc ACTTGTTTTT atcgtatatc 279 1.000000 17-1 103 atgttgccag AGTGATTTTA actcaagtcg 112 1.000000 18-1 503 gaatttaaaa AGTACTTCAT cgagaaatat 512 1.000000 19-1 666 aattctcggg ATTGGTTTTA tttaaatgac 675 1.000000 20-1 356 cgtcgtaatc TTCGTTTTCA ttactatctc 365 1.000000 21-1 724 Tttggtttgg TTTGATTTAT tttggtttgg 733 1.000000 22-1 411 GGttcctgtg ACTATCTTAT caaagtagct 420 1.000000 23-1 94 ttcaggcatt TATACTTTGG gtagttcagc 103 1.000000 24-1 692 ataaagctga ATTAAATTCA gtacaatgga 701 1.000000 25-1 578 actattgtat ACCAGTTTCT tgcatagaTG 587 1.000000 26-1 739 atatccaagc TCCGGTGTGT atgCATTGAT 748 1.000000 27-1 598 gttacaaatt ATTGATTTTA atatatatct 607 1.000000 28-1 617 cgggtaatac ATATGTTTCA atactgtttc 626 1.000000 29-1 483 tattctcttt TTTGTTTTAT tcttttcttt 492 1.000000 sites: * ** *** * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 545 554 549 -w 1.000000 >2 424 433 428 -w 1.000000 >3 533 542 537 -w 1.000000 >4 648 657 652 -w 1.000000 >5 698 707 702 -w 1.000000 >6 625 634 629 -w 1.000000 >7 80 89 84 -w 1.000000 >8 755 764 759 -w 1.000000 >9 587 596 591 -w 1.000000 >10 664 673 668 -w 1.000000 >11 699 708 703 -w 1.000000 >12 621 630 625 -w 1.000000 >13 607 616 611 -w 1.000000 >14 64 73 68 -w 1.000000 >15 269 278 273 -w 1.000000 >16 270 279 274 -w 1.000000 >17 103 112 107 -w 1.000000 >18 503 512 507 -w 1.000000 >19 666 675 670 -w 1.000000 >20 356 365 360 -w 1.000000 >21 724 733 728 -w 1.000000 >22 411 420 415 -w 1.000000 >23 94 103 98 -w 1.000000 >24 692 701 696 -w 1.000000 >25 578 587 582 -w 1.000000 >26 739 748 743 -w 1.000000 >27 598 607 602 -w 1.000000 >28 617 626 621 -w 1.000000 >29 483 492 487 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 50 . . 37 0.2 3 . . . 62 0.4 4 . . 49 . 0.5 6 . . . 81 0.8 7 . . . 87 1.1 8 . . . 91 1.2 10 37 . . 53 0.4 non- site . . . 30 site . . . 63 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 3 . . 1 2 3 . . . 6 4 4 . . 7 . 5 6 . . . 11 8 7 . . . 13 11 8 . . . 14 12 10 1 . . 4 4 site . . . 7 4 Weighted motif model: POS A C G T Prob 1 0.498511 0.048934 0.079616 0.372939 0.245087 3 0.153683 0.205674 0.016920 0.623723 0.434578 4 0.341771 0.048934 0.487139 0.122155 0.461671 6 0.090987 0.080282 0.016920 0.811810 0.808618 7 0.028292 0.017586 0.079616 0.874506 1.055349 8 0.028292 0.048934 0.016920 0.905854 1.151197 10 0.373119 0.017586 0.079616 0.529679 0.350569 Conservedness in bits: 4.507069 Conservedness in prob: 8.299495 Concensus sequence: ATGTTTT Complete log-likelihood ratio = 169 bits Missing position information = 123 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.19 bits MOTIF F 1-1 510 gctctgtcgt TCATTTTA ttttcaccta 517 1.000000 2-1 493 acggcaacca TTGCGTTT gcataaaatt 500 1.000000 3-1 412 atgcccacag TTTTATTT acaattttac 419 1.000000 4-1 268 ttcggttata TTGCTTAG tatatacgtc 275 1.000000 5-1 528 ttttaaaact TTTTTTTT ttgaaagtcc 535 1.000000 6-1 127 ttcttgagag GTCTTTTG agctgttgca 134 1.000000 7-1 688 ttcctttccg GTTTTTTT ctcaactacc 695 1.000000 8-1 445 tttaccattt TTGTTCTT atttactctc 452 1.000000 9-1 529 gtagtacgtc TTATTTTT gattatatgc 536 1.000000 10-1 655 caagtttaag TGCTTCTT aAGTGTTTTT 662 1.000000 11-1 377 agttcgaacc TCGCATCC ttcagtaatT 384 1.000000 12-1 153 tgttggtatg TTGCATTC atacgatggt 160 1.000000 13-1 674 cactgaagac TTGTTTTA taagtgtccc 681 1.000000 14-1 290 tctatagcgg TTCTATTT ctgttaacaa 297 1.000000 15-1 360 tgttgtgtat TGCTACTT tgggcaggcg 367 1.000000 16-1 693 agtagtagac TCGCATTT gcaaacatat 700 1.000000 17-1 227 TCTTTTcttt TCCTTTTT ttacaatagc 234 1.000000 18-1 35 agatccaaat TTGCATTC atagcagatc 42 1.000000 19-1 176 ccaattcaaa TTCGAGTT atgggggcca 183 1.000000 20-1 452 ttgctctgag TCTTTCTT tacggtgttt 459 1.000000 21-1 666 GTATGAgcgg TTTTAATT gaatcggctt 673 1.000000 22-1 657 cttgcaaaaa GCATATAA aaagcttcat 664 1.000000 23-1 734 cacacaacgc TTTTATTA gttgtcataa 741 1.000000 24-1 237 cgtcatgcta TTATATTA ttcttacgta 244 1.000000 25-1 76 aatcgggcac TTTTATTC gagaaagctt 83 1.000000 26-1 665 tgtgacaaaa TTGTTTCT gcctccaacg 672 1.000000 27-1 728 tttcttcttc TTCTTCTC tcttCTTTCC 735 1.000000 28-1 295 gctgatacca TCCTTTTA ttctctacac 302 1.000000 29-1 639 ttgcccctct TCGCTTTT tatcgaaaat 646 1.000000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 510 517 513 -w 1.000000 >2 493 500 496 -w 1.000000 >3 412 419 415 -w 1.000000 >4 268 275 271 -w 1.000000 >5 528 535 531 -w 1.000000 >6 127 134 130 -w 1.000000 >7 688 695 691 -w 1.000000 >8 445 452 448 -w 1.000000 >9 529 536 532 -w 1.000000 >10 655 662 658 -w 1.000000 >11 377 384 380 -w 1.000000 >12 153 160 156 -w 1.000000 >13 674 681 677 -w 1.000000 >14 290 297 293 -w 1.000000 >15 360 367 363 -w 1.000000 >16 693 700 696 -w 1.000000 >17 227 234 230 -w 1.000000 >18 35 42 38 -w 1.000000 >19 176 183 179 -w 1.000000 >20 452 459 455 -w 1.000000 >21 666 673 669 -w 1.000000 >22 657 664 660 -w 1.000000 >23 734 741 737 -w 1.000000 >24 237 244 240 -w 1.000000 >25 76 83 79 -w 1.000000 >26 665 672 668 -w 1.000000 >27 728 735 731 -w 1.000000 >28 295 302 298 -w 1.000000 >29 639 646 642 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 84 1.0 2 . 27 . 62 0.6 4 . 24 . 69 0.7 5 44 . . 50 0.4 6 . . . 72 0.6 7 . . . 81 0.8 8 . . . 53 0.2 non- site . . . 30 site . . . 70 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 12 10 2 . 1 . 6 6 4 . 1 . 8 7 5 2 . . 3 4 6 . . . 9 6 7 . . . 11 8 8 . . . 4 2 site . . . 8 5 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.110964 0.843158 0.978671 2 0.028292 0.268370 0.079616 0.623723 0.562698 4 0.028292 0.237022 0.048268 0.686418 0.667290 5 0.435815 0.017586 0.048268 0.498331 0.399992 6 0.059639 0.174326 0.048268 0.717766 0.609675 7 0.090987 0.080282 0.016920 0.811810 0.808618 8 0.216379 0.174326 0.079616 0.529679 0.174112 Conservedness in bits: 4.201055 Conservedness in prob: 7.682104 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 159 bits Missing position information = 127 bits Log-likelihood ratio statistic = 31 bits Degrees of freedom = 21 Information per parameter = 1.51 bits MOTIF G 1-1 460 aaacagtatt GAAACAG tattgaaaca 466 1.000000 2-1 285 gtagtgagtc CAAACGG ctcattttga 291 1.000000 3-1 341 TTTCTTTTTa AAACAGG atgctaaagc 347 1.000000 4-1 340 ctatgcaaga ATGCAAG aaaaattgat 346 1.000000 5-1 276 ttgtacaaca GAACAAG acaagctgtc 282 1.000000 6-1 781 ataaggcaga GAAAAAG aaaggaaaat 787 1.000000 7-1 356 ccccttgaat GAACACC aaaagatgtg 362 1.000000 8-1 480 attctagtat ATGAAAG ataccactgt 486 1.000000 9-1 237 tttctgtatt AAACATG TTTTCTATTT 243 1.000000 10-1 794 ACtttttact ACAAAAG 800 1.000000 11-1 550 tttgtgttcg AAAAAGG gaagattgct 556 1.000000 12-1 550 gaaaatacct AAAAAGG aaataggcaa 556 1.000000 13-1 496 aaaaaagatt GAACAAC tcttcgcggt 502 1.000000 14-1 335 ATaactcaaa AAACAAG agtacaatat 341 1.000000 15-1 759 ctaacactaa CAAAAGG aatacctgac 765 1.000000 16-1 610 cattacggca AAACAGA actgaaacaa 616 1.000000 17-1 176 gactggtcta CCAAAGG aataagatca 182 1.000000 18-1 208 tatttttatc AAAAAAG tattaacatt 214 1.000000 19-1 101 agcagcagca ACAAGGC cactccagtt 107 1.000000 20-1 737 ACAAAAacaa AAACAGG ctaagccgat 743 1.000000 21-1 778 ctttccgcgt AAAAAGG gAAAAAAAGC 784 1.000000 22-1 396 ttaattttcc AAAAAGG ttcctgtgAC 402 1.000000 23-1 687 gcattgtcat CAACAGG acatctgtat 693 1.000000 24-1 170 aaagacggct CAAAAGG tctcttcccc 176 1.000000 25-1 679 cgaatgtaaa CAAAAAA aactgtctag 685 1.000000 26-1 690 acggttttga AAACAGG cgatctcacg 696 1.000000 27-1 462 attacctctg AAACAAA gccgagacgg 468 1.000000 28-1 434 acttgatgct CAGACGG agtacgtgaa 440 1.000000 29-1 540 aaaatagtta CAAACAA ctttgcgcca 546 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 460 466 463 -w 1.000000 >2 285 291 288 -w 1.000000 >3 341 347 344 -w 1.000000 >4 340 346 343 -w 1.000000 >5 276 282 279 -w 1.000000 >6 781 787 784 -w 1.000000 >7 356 362 359 -w 1.000000 >8 480 486 483 -w 1.000000 >9 237 243 240 -w 1.000000 >10 794 800 797 -w 1.000000 >11 550 556 553 -w 1.000000 >12 550 556 553 -w 1.000000 >13 496 502 499 -w 1.000000 >14 335 341 338 -w 1.000000 >15 759 765 762 -w 1.000000 >16 610 616 613 -w 1.000000 >17 176 182 179 -w 1.000000 >18 208 214 211 -w 1.000000 >19 101 107 104 -w 1.000000 >20 737 743 740 -w 1.000000 >21 778 784 781 -w 1.000000 >22 396 402 399 -w 1.000000 >23 687 693 690 -w 1.000000 >24 170 176 173 -w 1.000000 >25 679 685 682 -w 1.000000 >26 690 696 693 -w 1.000000 >27 462 468 465 -w 1.000000 >28 434 440 437 -w 1.000000 >29 540 546 543 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 53 27 . . 0.4 2 78 . . . 0.7 3 84 . . . 1.0 4 56 39 . . 0.7 5 78 . . . 0.8 6 40 . 49 . 0.6 7 . . 71 . 1.0 non- site 31 . 18 . site 60 . 22 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 4 1 . . 4 2 10 . . . 7 3 12 . . . 10 4 5 4 . . 7 5 10 . . . 8 6 2 . 7 . 6 7 . . 14 . 10 site 6 . 1 . 5 Weighted motif model: POS A C G T Prob 1 0.529859 0.268370 0.173660 0.028111 0.418925 2 0.780643 0.111630 0.016920 0.090807 0.728140 3 0.843339 0.017586 0.110964 0.028111 0.972039 4 0.561207 0.393762 0.016920 0.028111 0.725366 5 0.780643 0.142978 0.048268 0.028111 0.782155 6 0.404467 0.048934 0.487139 0.059459 0.590673 7 0.153683 0.111630 0.706575 0.028111 1.017645 Conservedness in bits: 5.234942 Conservedness in prob: 9.197625 Concensus sequence: AAACAGG Complete log-likelihood ratio = 198 bits Missing position information = 140 bits Log-likelihood ratio statistic = 57 bits Degrees of freedom = 21 Information per parameter = 2.76 bits MOTIF H 1-1 330 agggaatcat CCTAACC aaatatttcg 336 1.000000 2-1 124 ctcgctaacg CAAAAAT tatcgcgttc 130 1.000000 3-1 765 ttcaatagtg CAAAAAT aggtaactaa 771 1.000000 4-1 225 catctttatc ACAAAAT atacaattaa 231 1.000000 5-1 606 tgtcagttaa AAAAAAT atggctaagt 612 1.000000 6-1 275 cgatccatat AAAGACC cgagtagttg 281 1.000000 7-1 302 ttaactcttc CCAAACT aaaaagtatc 308 1.000000 8-1 108 ctagcaggtc AAACAAC tcatcttgtt 114 1.000000 9-1 680 attctacata AATATAT ataccggctt 686 1.000000 10-1 779 ttcaatacgg CAGCAAC tttttactAC 785 1.000000 11-1 619 AAAAATAAAa ATAAAAA gtggtctcag 625 1.000000 12-1 703 ttatctattc AAAAAAT ttctatttac 709 1.000000 13-1 474 caaaactaat ACAAAAC agcctaaaaa 480 1.000000 14-1 723 catgtaaagc AAAAAAC tagaacacta 729 1.000000 15-1 788 aatacgctat CAAAAGA acgaat 794 1.000000 16-1 61 caaattgaaa ACGATAA agaactagCC 67 1.000000 17-1 646 gcgactatcg CAAATAA gcagttccca 652 1.000000 18-1 435 ttagggctct CAAAAAT agtgagagaa 441 1.000000 19-1 29 atcaacaagg CCAAAAC aaccagcagc 35 1.000000 20-1 778 tcatacgtat ACAACAC atacacacat 784 1.000000 21-1 144 atcgccgaat ACGAAAC gtacgtcatg 150 1.000000 22-1 104 gctcgcgttg CAGAAAT acgaggtaga 110 1.000000 23-1 250 catgatatgg AAAAACG tataccagtg 256 1.000000 24-1 495 ctgatactta CTACAAC cataatgctg 501 1.000000 25-1 656 taaatgcaaa AAAAAAA atgattcgaa 662 1.000000 26-1 552 acacctttaa AAAAAAC caagaacgta 558 1.000000 27-1 788 agccaaacca AAAAAAC tataca 794 1.000000 28-1 95 cacgattgcc CAGATAG tagcgcaatG 101 1.000000 29-1 239 aaaaccggcc AAAAAAA aaAAAAAAAA 245 1.000000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 330 336 333 -w 1.000000 >2 124 130 127 -w 1.000000 >3 765 771 768 -w 1.000000 >4 225 231 228 -w 1.000000 >5 606 612 609 -w 1.000000 >6 275 281 278 -w 1.000000 >7 302 308 305 -w 1.000000 >8 108 114 111 -w 1.000000 >9 680 686 683 -w 1.000000 >10 779 785 782 -w 1.000000 >11 619 625 622 -w 1.000000 >12 703 709 706 -w 1.000000 >13 474 480 477 -w 1.000000 >14 723 729 726 -w 1.000000 >15 788 794 791 -w 1.000000 >16 61 67 64 -w 1.000000 >17 646 652 649 -w 1.000000 >18 435 441 438 -w 1.000000 >19 29 35 32 -w 1.000000 >20 778 784 781 -w 1.000000 >21 144 150 147 -w 1.000000 >22 104 110 107 -w 1.000000 >23 250 256 253 -w 1.000000 >24 495 501 498 -w 1.000000 >25 656 662 659 -w 1.000000 >26 552 558 555 -w 1.000000 >27 788 794 791 -w 1.000000 >28 95 101 98 -w 1.000000 >29 239 245 242 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 56 39 . . 0.7 2 62 27 . . 0.5 3 72 . . . 0.6 4 81 . . . 0.8 5 78 . . . 0.7 6 78 . . . 0.8 7 . 39 . . 0.2 non- site 31 . . . site 67 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 5 4 . . 7 2 6 1 . . 5 3 9 . . . 6 4 11 . . . 8 5 10 . . . 7 6 10 . . . 8 7 . 4 . . 2 site 8 . . . 5 Weighted motif model: POS A C G T Prob 1 0.561207 0.393762 0.016920 0.028111 0.725366 2 0.623903 0.268370 0.016920 0.090807 0.533738 3 0.717947 0.017586 0.173660 0.090807 0.627119 4 0.811991 0.111630 0.048268 0.028111 0.843682 5 0.780643 0.048934 0.016920 0.153503 0.725078 6 0.780643 0.142978 0.048268 0.028111 0.782155 7 0.216379 0.393762 0.079616 0.310243 0.194237 Conservedness in bits: 4.431376 Conservedness in prob: 8.297366 Concensus sequence: CAAAAAC Complete log-likelihood ratio = 167 bits Missing position information = 129 bits Log-likelihood ratio statistic = 38 bits Degrees of freedom = 21 Information per parameter = 1.81 bits MOTIF I 1-1 675 catcaagtga GGCTTGAGT ttaCGTTTGT 683 1.000000 2-1 41 tcctaaactt TGTTTGATT atgaaagcaa 49 1.000000 3-1 643 tgagattttg TCTTTTTTT acctggtatt 651 1.000000 4-1 411 gcaacaagtt TCCTTGATT ataaaggtct 419 1.000000 5-1 730 TTATCtcagg TTCTTGCTT gtctttggta 738 1.000000 6-1 731 tgtaatcatt TTCTTTCTT ctaatagcta 739 1.000000 7-1 648 taggtggtac TATTTCATT ctactaagat 656 1.000000 8-1 425 tccatagtga TATTTGTTT gtttaccatt 433 1.000000 9-1 488 cctttttcgc TGCCTCTTT ttcccatgca 496 1.000000 10-1 290 ctgaaacaca TTCTTGTTA catctgtcac 298 1.000000 11-1 32 agattattac TTCTTCTTT gttttatgtg 40 1.000000 12-1 365 tataaaactc ACCTTCATT gttgCTTTAT 373 1.000000 13-1 595 acaattagat TACTTCTTT ttaGTTGACT 603 1.000000 14-1 165 ggcttatact TTTTTCTTT actactttag 173 1.000000 15-1 338 AAAAAgaaat TCCTTCTTT gggtgttgtg 346 1.000000 16-1 454 atttgattta TACTTGTTT cagatccttt 462 1.000000 17-1 149 aacaaacgaa TCTTTGATT gacgcaaaga 157 1.000000 18-1 14 agcactaaga TTTTTGATA taagatccaa 22 1.000000 19-1 753 cctttatctt TTTTCCTTT aagagcagga 761 1.000000 20-1 584 cagattgacc ATCTTCCTT cctctcgtga 592 1.000000 21-1 706 TTTTTGTTTT TGTTTTGTT ttggtttggT 714 1.000000 22-1 498 cagcggaata TCTTTGTTT actcattaaa 506 1.000000 23-1 161 gttataaggt TGTTTCATA tgtgttttat 169 1.000000 24-1 347 tgccttgtcc TTCTTTGTT tcaagcgttt 355 1.000000 25-1 770 actgttagag TCTTTGGTA cgcaaacatt 778 1.000000 26-1 716 gattcaagaa TATTTCGTT tatcatatcc 724 1.000000 27-1 693 cttgcagtac TGCTTGTTT aaatacgcag 701 1.000000 28-1 111 Gtagcgcaat GGCTTGATA ccgttccaaa 119 1.000000 29-1 618 TTCGTGGTcc TTTTTCCTA atttgcccct 626 1.000000 sites: * **** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 675 683 679 -w 1.000000 >2 41 49 45 -w 1.000000 >3 643 651 647 -w 1.000000 >4 411 419 415 -w 1.000000 >5 730 738 734 -w 1.000000 >6 731 739 735 -w 1.000000 >7 648 656 652 -w 1.000000 >8 425 433 429 -w 1.000000 >9 488 496 492 -w 1.000000 >10 290 298 294 -w 1.000000 >11 32 40 36 -w 1.000000 >12 365 373 369 -w 1.000000 >13 595 603 599 -w 1.000000 >14 165 173 169 -w 1.000000 >15 338 346 342 -w 1.000000 >16 454 462 458 -w 1.000000 >17 149 157 153 -w 1.000000 >18 14 22 18 -w 1.000000 >19 753 761 757 -w 1.000000 >20 584 592 588 -w 1.000000 >21 706 714 710 -w 1.000000 >22 498 506 502 -w 1.000000 >23 161 169 165 -w 1.000000 >24 347 355 351 -w 1.000000 >25 770 778 774 -w 1.000000 >26 716 724 720 -w 1.000000 >27 693 701 697 -w 1.000000 >28 111 119 115 -w 1.000000 >29 618 626 622 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.8 3 . 49 . 47 0.8 4 . . . 91 1.2 5 . . . 91 1.2 6 . 39 42 . 0.7 8 . . . 91 1.2 9 . . . 75 0.7 non- site . . . 30 site . . . 73 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 8 3 . 7 . 3 8 4 . . . 14 12 5 . . . 14 12 6 . 4 5 . 7 8 . . . 14 12 9 . . . 10 7 site . . . 9 7 Weighted motif model: POS A C G T Prob 1 0.090987 0.017586 0.079616 0.811810 0.810637 3 0.028292 0.487806 0.016920 0.466983 0.772223 4 0.028292 0.048934 0.016920 0.905854 1.151197 5 0.028292 0.048934 0.016920 0.905854 1.151197 6 0.028292 0.393762 0.424444 0.153503 0.655589 8 0.028292 0.017586 0.048268 0.905854 1.151948 9 0.216379 0.017586 0.016920 0.749114 0.723447 Conservedness in bits: 6.416237 Conservedness in prob: 9.844594 Concensus sequence: TCTTGTT Complete log-likelihood ratio = 244 bits Missing position information = 180 bits Log-likelihood ratio statistic = 63 bits Degrees of freedom = 21 Information per parameter = 3.05 bits MOTIF J 1-1 425 gttataagtt AAAATTAAT atgtgacgca 433 1.000000 2-1 456 gttttcgtat AATATTAAA gggatcgTGT 464 1.000000 3-1 32 tcttatatat TATATAAAA tatgaatcat 40 1.000000 4-1 36 cttccgtttc AAAAATGAA tataatcgta 44 1.000000 5-1 786 aacaaacaaa AAAAAAAAA aaaaaa 794 1.000000 6-1 232 Gcgactgcac TAAACTAGA ggaaagaagg 240 1.000000 7-1 135 gagaatgcag AAACAAAAA aaaaaaaagt 143 1.000000 8-1 510 agctcgtatc AAAATAAAA ctagtcagtc 518 1.000000 9-1 43 aagacgagaa AAAATAAAA acaacggcac 51 1.000000 10-1 412 tgatgacgcg AAAAGTAGA cttcgcgtaa 420 1.000000 11-1 609 gcactcttgg AAAAATAAA aATAAAAAgt 617 1.000000 12-1 638 TCAaattatt AAAAGAAAA taaaaCTATC 646 1.000000 13-1 362 agctcgtttc AAAATGAAA caaacgccgt 370 1.000000 14-1 318 gaaggtactt GAAAGTGAT aactcaaaAA 326 1.000000 15-1 174 aaaatagcaa AAAACGCAA aaagcatacc 182 1.000000 16-1 229 aaagcttctg AAAAAGAGA aaagtgagtg 237 1.000000 17-1 783 aaaagctaaa AAAACCAAA aaatttcag 791 1.000000 18-1 78 aaaattatgg AACAATAGA cctgttcaaa 86 1.000000 19-1 331 aacttttctc AACAGAACA ataacggcaa 339 1.000000 20-1 724 aaaCAAAACA AAAACAAAA acaaAAACAG 732 1.000000 21-1 786 gtAAAAAGGg AAAAAAAGC agatat 794 1.000000 22-1 139 ttaggaacat AAAAATAAA tatctcgcgc 147 1.000000 23-1 424 tttatgataa AAAAATCAA gaaaaaaacc 432 1.000000 24-1 432 caaaacctcg AACATAAAA caacactgaa 440 1.000000 25-1 14 ggtgttgcct ACAATAAAA gcaattataa 22 1.000000 26-1 319 ataagtattt AAAAGAAAA gagacgaacc 327 1.000000 27-1 54 gaatcaactg AAAAGTCAC aaaaaacccc 62 1.000000 28-1 399 actgattatt AAAAACAAA cgtaaactca 407 1.000000 29-1 248 cAAAAAAAaa AAAAAAAAA aAAAAAAAat 256 1.000000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 425 433 429 -w 1.000000 >2 456 464 460 -w 1.000000 >3 32 40 36 -w 1.000000 >4 36 44 40 -w 1.000000 >5 786 794 790 -w 1.000000 >6 232 240 236 -w 1.000000 >7 135 143 139 -w 1.000000 >8 510 518 514 -w 1.000000 >9 43 51 47 -w 1.000000 >10 412 420 416 -w 1.000000 >11 609 617 613 -w 1.000000 >12 638 646 642 -w 1.000000 >13 362 370 366 -w 1.000000 >14 318 326 322 -w 1.000000 >15 174 182 178 -w 1.000000 >16 229 237 233 -w 1.000000 >17 783 791 787 -w 1.000000 >18 78 86 82 -w 1.000000 >19 331 339 335 -w 1.000000 >20 724 732 728 -w 1.000000 >21 786 794 790 -w 1.000000 >22 139 147 143 -w 1.000000 >23 424 432 428 -w 1.000000 >24 432 440 436 -w 1.000000 >25 14 22 18 -w 1.000000 >26 319 327 323 -w 1.000000 >27 54 62 58 -w 1.000000 >28 399 407 403 -w 1.000000 >29 248 256 252 -w 1.000000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 84 . . . 0.9 2 91 . . . 1.1 3 78 . . . 0.7 4 91 . . . 1.1 7 78 . . . 0.8 8 75 . . . 0.7 9 81 . . . 0.8 non- site 31 . . . site 87 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 12 . . . 9 2 14 . . . 11 3 10 . . . 7 4 14 . . . 11 7 10 . . . 8 8 9 . . . 7 9 11 . . . 8 site 13 . . . 10 Weighted motif model: POS A C G T Prob 1 0.843339 0.017586 0.048268 0.090807 0.897574 2 0.906034 0.048934 0.016920 0.028111 1.144005 3 0.780643 0.111630 0.016920 0.090807 0.728140 4 0.906034 0.048934 0.016920 0.028111 1.144005 7 0.780643 0.111630 0.079616 0.028111 0.752413 8 0.749295 0.048934 0.173660 0.028111 0.738202 9 0.811991 0.080282 0.016920 0.090807 0.802539 Conservedness in bits: 6.206877 Conservedness in prob: 9.826446 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 233 bits Missing position information = 158 bits Log-likelihood ratio statistic = 75 bits Degrees of freedom = 21 Information per parameter = 3.58 bits seed 10 time: 20 seconds (0.33 minutes)