MOTIF A 1-1 100 gtgttgtctg TCATCTT ggagtatagt 106 1.505769 2-1 250 atgcctattt CTATCTT ttaatcgtat 256 0.892308 3-1 446 gacgtggaga TTTTTTT atcccgcata 452 1.115385 4-1 724 cttcataaca TTATTTT tcggttccac 730 0.557692 5-1 329 tactggtgct TCCTCTT tgggatgata 335 0.669231 6-1 185 ccttggtttt TCCTTCT tttcgccgta 191 1.840385 7-1 679 ttaAAGCAAT TCCTTTC cggTTTTTTT 685 1.840385 8-1 115 gtcaaacaac TCATCTT gttgctgttc 121 0.501923 9-1 492 tttcgctgcc TCTTTTT cCCATGCAtt 498 0.557692 10-1 53 cagctcgtgt TCTTCTT gcagcacatc 59 1.840385 11-1 136 CATCATACTa TCTTCTT acaccgtata 142 0.780769 12-1 9 ctacaaaa TTAGTTT attgggccga 15 0.725000 13-1 129 ttgcaagtta CATTCTT tgtataacga 135 2.286538 14-1 364 aaatcttttg CCTTCAT tgtcattgtc 370 0.613462 15-1 339 aaaagaaatt CCTTCTT tgggtgttgt 345 0.780769 16-1 468 TGTTTCagat CCTTTGT cgggccggat 474 0.501923 17-1 546 ttgtaaagtc TCTTTTT ggatattgca 552 0.780769 18-1 196 tagcacctta CCTATTT ttatcaaaaa 202 0.669231 19-1 546 tgcaggatgc CCTTTTT gacgtattga 552 2.788462 20-1 644 TGCTTTTTTt CCCTTTT tacgcgGAAA 650 0.725000 21-1 703 tTGTTTTTGT TTTTGTT TTGTTTTggt 709 0.725000 22-1 770 catcgttgat TCTTTTT ggtaagatct 776 0.557692 23-1 217 ctgacatatc TCATTTT gagatacaac 223 0.557692 24-1 335 aacaaattat TTTGCCT tgtccTTCTT 341 1.450000 25-1 402 gcagtttttt ACATCTT tgagactctT 408 0.390385 26-1 185 ctcatgttgc CCATTTT gttcgctttg 191 0.613462 27-1 720 agtatacatt TCTTCTT cttcttctct 726 0.501923 28-1 670 catattaatt TTAACTT ataactggcc 676 1.505769 29-1 573 gcctgcttat TCTTTTT ccagctctct 579 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 100 106 103 -w 1.505769 >2 250 256 253 -w 0.892308 >3 446 452 449 -w 1.115385 >4 724 730 727 -w 0.557692 >5 329 335 332 -w 0.669231 >6 185 191 188 -w 1.840385 >7 679 685 682 -w 1.840385 >8 115 121 118 -w 0.501923 >9 492 498 495 -w 0.557692 >10 53 59 56 -w 1.840385 >11 136 142 139 -w 0.780769 >12 9 15 12 -w 0.725000 >13 129 135 132 -w 2.286538 >14 364 370 367 -w 0.613462 >15 339 345 342 -w 0.780769 >16 468 474 471 -w 0.501923 >17 546 552 549 -w 0.780769 >18 196 202 199 -w 0.669231 >19 546 552 549 -w 2.788462 >20 644 650 647 -w 0.725000 >21 703 709 706 -w 0.725000 >22 770 776 773 -w 0.557692 >23 217 223 220 -w 0.557692 >24 335 341 338 -w 1.450000 >25 402 408 405 -w 0.390385 >26 185 191 188 -w 0.613462 >27 720 726 723 -w 0.501923 >28 670 676 673 -w 1.505769 >29 573 579 576 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 30 . 62 0.6 2 . 68 . . 0.9 3 . . . 53 0.3 4 . . . 81 0.8 5 . 43 . 50 0.6 6 . . . 81 0.8 7 . . . 91 1.2 non- site . 19 . 30 site . 24 . 66 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 2 . 6 6 2 . 12 . . 9 3 . . . 4 3 4 . . . 11 8 5 . 5 . 3 6 6 . . . 11 8 7 . . . 14 12 site . 1 . 7 6 Weighted motif model: POS A C G T Prob 1 0.040529 0.327027 0.016920 0.615524 0.681301 2 0.099970 0.636467 0.016920 0.246643 0.790761 3 0.255564 0.176677 0.016920 0.550839 0.304558 4 0.096473 0.017586 0.085102 0.800839 0.779514 5 0.028292 0.447656 0.039647 0.484405 0.669220 6 0.047522 0.120733 0.032654 0.799090 0.801571 7 0.028292 0.075279 0.016920 0.879510 1.067434 Conservedness in bits: 5.094359 Conservedness in prob: 9.005331 Concensus sequence: TCTTCTT Complete log-likelihood ratio = 193 bits Missing position information = 146 bits Log-likelihood ratio statistic = 46 bits Degrees of freedom = 21 Information per parameter = 2.23 bits MOTIF B 1-1 465 gtattgaaac AGTATTGAAACATATGT attacccgga 481 1.505769 2-1 553 gcatagacct CGCAGGCTTTGAAGAGT cctgtggaat 569 0.892308 3-1 567 ataagggcat TCAGTACCGACAATGCT atACTTGTAa 583 1.115385 4-1 779 ctttggaggc AACATAGATAGATAAAC gtgca 795 0.557692 5-1 65 taacgccaag ACCATTGAACAATCCCC atcattcggc 81 0.669231 6-1 354 cggacttttt AACTTACACACATCTTT tggtgttcat 370 1.840385 7-1 80 gcttttctgc AATTGTTTCAATGCCCT gtaaaaaacc 96 1.840385 8-1 427 catagtgata TTTGTTTGTTTACCATT tttgttctta 443 0.501923 9-1 557 tcgacatacc CCAGGTTTCACAAAGGT ttggcttcct 573 0.557692 10-1 599 gacgtgtgag ACCTTCCTCAAACATGT tacaggttga 615 1.840385 11-1 248 tggataagtt CATATCCTAAAACGTGT tgacaacact 264 0.780769 12-1 164 tgcattcata CGATGGTGAACAGAGGC agtttggttt 180 0.725000 13-1 198 AATGTAAAga ATTGGTCCAGTTTGCAC aagacaccct 214 2.286538 14-1 645 CATTattgaa AAATGTTTTAAAAATGT ttcagCCCAG 661 0.613462 15-1 248 ttgactgcgt CAGATTCAAAAACCTGC aaagtTTGTT 264 0.780769 16-1 71 acgataaaga ACTAGCCAAACAGTTAC aggaacaaga 87 0.501923 17-1 383 tgacctccct ACATGCTTCGGAATTTC cttattcgta 399 0.780769 18-1 52 catagcagat CTTGCACCCATAATAGA aaattatgga 68 0.669231 19-1 166 ggcaataact CCAATTCAAATTCGAGT tatgggggcc 182 2.788462 20-1 562 gtcccgttca GTGCTTCAAACTCAGAT tgaccatctt 578 0.725000 21-1 610 aggtccgaaa ATGCGTCTATGCTGGCC attcttgtat 626 0.725000 22-1 400 ttttccaaaa AGGTTCCTGTGACTATC ttatcaaagt 416 0.557692 23-1 463 aagaaagtag AGGCGACGATGACCACC tatggcctaa 479 0.557692 24-1 606 ctatgtatag ATTTGTTAGAGACCAGT tttaagctac 622 1.450000 25-1 132 gaaatagtta AGAAGTCGTTGAAAGAT aggcactccc 148 0.390385 26-1 156 tagttcagct AAGGGACGCGGAGTTTC atctcatgtt 172 0.613462 27-1 779 atactgggaa GCCAAACCAAAAAAACT ataca 795 0.501923 28-1 89 ataattcacg ATTGCCCAGATAGTAGC gcaatggctt 105 1.505769 29-1 333 ggtttcgttt GTTGCTTAAAGGGTGGA tcggtcattt 349 0.725000 sites: * * * ** * * 5 10 15 (29 sites in 29 sequences) Conservedness in sites: >1 465 481 473 -w 1.505769 >2 553 569 561 -w 0.892308 >3 567 583 575 -w 1.115385 >4 779 795 787 -w 0.557692 >5 65 81 73 -w 0.669231 >6 354 370 362 -w 1.840385 >7 80 96 88 -w 1.840385 >8 427 443 435 -w 0.501923 >9 557 573 565 -w 0.557692 >10 599 615 607 -w 1.840385 >11 248 264 256 -w 0.780769 >12 164 180 172 -w 0.725000 >13 198 214 206 -w 2.286538 >14 645 661 653 -w 0.613462 >15 248 264 256 -w 0.780769 >16 71 87 79 -w 0.501923 >17 383 399 391 -w 0.780769 >18 52 68 60 -w 0.669231 >19 166 182 174 -w 2.788462 >20 562 578 570 -w 0.725000 >21 610 626 618 -w 0.725000 >22 400 416 408 -w 0.557692 >23 463 479 471 -w 0.557692 >24 606 622 614 -w 1.450000 >25 132 148 140 -w 0.390385 >26 156 172 164 -w 0.613462 >27 779 795 787 -w 0.501923 >28 89 105 97 -w 1.505769 >29 333 349 341 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 56 24 . . 0.3 5 . . 42 40 0.4 7 . 58 . . 0.7 9 44 24 . . 0.1 10 62 . . . 0.3 12 75 . . . 0.6 17 . 39 . 50 0.5 non- site 31 19 . . site 36 24 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 5 1 . . 3 5 . . 5 2 4 7 . 9 . . 7 9 2 1 . . 1 10 6 . . . 3 12 9 . . . 6 17 . 4 . 3 5 site 1 1 . . 0 Weighted motif model: POS A C G T Prob 1 0.599970 0.243111 0.078109 0.078811 0.395051 5 0.044026 0.108495 0.391046 0.456433 0.460514 7 0.028292 0.615488 0.102584 0.253636 0.769183 9 0.444375 0.272831 0.162025 0.120769 0.167487 10 0.687382 0.038565 0.132305 0.141748 0.471461 12 0.652417 0.040313 0.039647 0.267622 0.461278 17 0.071998 0.339265 0.016920 0.571818 0.571525 Conservedness in bits: 3.296500 Conservedness in prob: 7.299867 Concensus sequence: AGCAAAT Complete log-likelihood ratio = 103 bits Missing position information = 111 bits Log-likelihood ratio statistic = -7 bits Degrees of freedom = 21 Information per parameter = -0.373 bits MOTIF C 1-1 191 atttggagaa AAACAGAA gcttcagcat 198 1.505769 2-1 605 CGATctagct CAACAGTC ctttcagtaa 612 0.892308 3-1 341 tttcttttta AAACAGGA tgctaaagcc 348 1.115385 4-1 315 gcgctaattg CATCAGCC tatctttcta 322 0.557692 5-1 784 caaacaaaca AAAAAAAA AAAAAAAAa 791 0.669231 6-1 11 gggcaaaata AAAAAGGA aaaagagtac 18 1.840385 7-1 600 Tgcaacagct CAAAAGAC ctctcaagaa 607 1.840385 8-1 606 ttgagctcat TCACTGAT cgacacattt 613 0.501923 9-1 712 aatataggaa CAAAAGAA AAAGAAAAct 719 0.557692 10-1 166 catcattgca CAACAGAA tttcgttttg 173 1.840385 11-1 644 agaattgttt CAAAAGTG gcactgacac 651 0.780769 12-1 550 gaaaatacct AAAAAGGA aataggcaat 557 0.725000 13-1 477 aactaataca AAACAGCC taaaaaagat 484 2.286538 14-1 255 ttagaaacac CAACAGAT acgtatacac 262 0.613462 15-1 116 cccagtcgta CAAAAGCA cctctgcata 123 0.780769 16-1 125 aatttgaagc AAAAAGGA aaatccattc 132 0.501923 17-1 86 tcttgagttg CAAAAGGA tgttgccaga 93 0.780769 18-1 499 taaggaattt AAAAAGTA cttcatcgag 506 0.669231 19-1 195 tgggggccag CAACAGGC taatgagtat 202 2.788462 20-1 734 aaaacaaaaa CAAAAACA ggctaagccg 741 0.725000 21-1 194 cacgaagctg CAACAGCC gttcgtacag 201 0.725000 22-1 80 agccactcct CAACAGAA AACCGTGCTC 87 0.557692 23-1 687 gcattgtcat CAACAGGA catctgtata 694 0.557692 24-1 393 taTTATTTTt CAACAGAC ggtgtgcccg 400 1.450000 25-1 517 cgcacaatct CAACAGCC aggctttgtg 524 0.390385 26-1 690 acggttttga AAACAGGC gatctcacga 697 0.613462 27-1 147 gctatctcat CAAAACAG tgcgggttaC 154 0.501923 28-1 208 atgatagtga AAACAGGC agccctatgc 215 1.505769 29-1 519 aggttctttg CAACAGCA ctgaaaatag 526 0.725000 sites: ****** * 5 (29 sites in 29 sequences) Conservedness in sites: >1 191 198 194 -w 1.505769 >2 605 612 608 -w 0.892308 >3 341 348 344 -w 1.115385 >4 315 322 318 -w 0.557692 >5 784 791 787 -w 0.669231 >6 11 18 14 -w 1.840385 >7 600 607 603 -w 1.840385 >8 606 613 609 -w 0.501923 >9 712 719 715 -w 0.557692 >10 166 173 169 -w 1.840385 >11 644 651 647 -w 0.780769 >12 550 557 553 -w 0.725000 >13 477 484 480 -w 2.286538 >14 255 262 258 -w 0.613462 >15 116 123 119 -w 0.780769 >16 125 132 128 -w 0.501923 >17 86 93 89 -w 0.780769 >18 499 506 502 -w 0.669231 >19 195 202 198 -w 2.788462 >20 734 741 737 -w 0.725000 >21 194 201 197 -w 0.725000 >22 80 87 83 -w 0.557692 >23 687 694 690 -w 0.557692 >24 393 400 396 -w 1.450000 >25 517 524 520 -w 0.390385 >26 690 697 693 -w 0.613462 >27 147 154 150 -w 0.501923 >28 208 215 211 -w 1.505769 >29 519 526 522 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 58 . . 0.8 2 91 . . . 1.1 3 91 . . . 1.1 4 40 55 . . 0.8 5 91 . . . 1.1 6 . . 83 . 1.4 8 50 33 . . 0.3 non- site 31 19 . . site 60 23 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 9 . . 8 2 14 . . . 11 3 14 . . . 11 4 2 8 . . 8 5 14 . . . 11 6 . . 18 . 14 8 3 3 . . 3 site 6 1 . . 5 Weighted motif model: POS A C G T Prob 1 0.386683 0.552551 0.016920 0.043846 0.775693 2 0.921648 0.033320 0.016920 0.028111 1.203284 3 0.919900 0.017586 0.016920 0.045594 1.193068 4 0.353466 0.601502 0.016920 0.028111 0.893581 5 0.921648 0.017586 0.016920 0.043846 1.200681 6 0.071998 0.033320 0.866570 0.028111 1.589141 8 0.453117 0.426677 0.057130 0.063076 0.490507 Conservedness in bits: 7.345954 Conservedness in prob: 11.207345 Concensus sequence: CAACAGC Complete log-likelihood ratio = 250 bits Missing position information = 195 bits Log-likelihood ratio statistic = 55 bits Degrees of freedom = 21 Information per parameter = 2.64 bits MOTIF D 1-1 418 Caggccagtt ATAAGTTAAAA ttaatatgtg 428 1.505769 2-1 588 attgccgtac AAAAAATCGAT ctagctCAAC 598 0.892308 3-1 725 tggtctacct ATAAACATTCT ctctctcatc 735 1.115385 4-1 621 tgtgcaacgt ACAAGAGCAAA gtagaaaaat 631 0.557692 5-1 451 taccttaaat AGAAAAGGAAA gataataaat 461 0.669231 6-1 790 agaaaaagaa AGGAAAATAAT 800 1.840385 7-1 382 gtgtaagtta AAAAGTCCGAA cgaatttatc 392 1.840385 8-1 730 ccgtgtatat ATAAGAGCTAT tcactatttt 740 0.501923 9-1 259 tatttgccga ATAAGCATAAA cgtatcattg 269 0.557692 10-1 758 acctgatccg ACAAGAGCAAT ttcaatacgg 768 1.840385 11-1 577 ccaaacgcaa ATAAGGAGGAA acccgctgat 587 0.780769 12-1 35 acggaaagtt ACAAAGTAGCG agtttgtcgt 45 0.725000 13-1 185 tttgttgaaa ACGAATGTAAA gaATTGGTCC 195 2.286538 14-1 339 ctCAAAAAAC AAGAGTACAAT atgaaaatct 349 0.613462 15-1 758 cctaacacta ACAAAAGGAAT acctgacaga 768 0.780769 16-1 511 aggcgtcgaa ATAAATCAAAT aagaactaaa 521 0.501923 17-1 773 cattaacaat AAAAGCTAAAA aaaccaaaaa 783 0.780769 18-1 1 AAAAGCACTAA gatttttgat 11 0.669231 19-1 23 AATacaatca ACAAGGCCAAA acaaccagca 33 2.788462 20-1 657 TTTTtacgcg GAAAGCGCAAA tttcctcgaa 667 0.725000 21-1 788 aaAAAGGGAA AAAAAGCAGAT at 798 0.725000 22-1 586 AAGTgcccgt AGGAGATTTAA gctagCCCAG 596 0.557692 23-1 595 ttggcaaggg AAGAATTCGAT gacccgaatt 605 0.557692 24-1 19 aactccagag AAAAAGCCAAA ggaaaatcct 29 1.450000 25-1 172 atgacccaaa AAGAGATGAAA gtaagatatg 182 0.390385 26-1 495 aaatagagaa TCAGGATGAAT tatccaagaa 505 0.613462 27-1 249 aggctggaac AGAAGTCAAAT gaggatgacg 259 0.501923 28-1 524 gcctacatac AAAAGAGCGAA aggcgatata 534 1.505769 29-1 239 aaaaccggcc AAAAAAAAAAA aaaAAAAAAA 249 0.725000 sites: * *** *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 418 428 423 -w 1.505769 >2 588 598 593 -w 0.892308 >3 725 735 730 -w 1.115385 >4 621 631 626 -w 0.557692 >5 451 461 456 -w 0.669231 >6 790 800 795 -w 1.840385 >7 382 392 387 -w 1.840385 >8 730 740 735 -w 0.501923 >9 259 269 264 -w 0.557692 >10 758 768 763 -w 1.840385 >11 577 587 582 -w 0.780769 >12 35 45 40 -w 0.725000 >13 185 195 190 -w 2.286538 >14 339 349 344 -w 0.613462 >15 758 768 763 -w 0.780769 >16 511 521 516 -w 0.501923 >17 773 783 778 -w 0.780769 >18 1 11 6 -w 0.669231 >19 23 33 28 -w 2.788462 >20 657 667 662 -w 0.725000 >21 788 798 793 -w 0.725000 >22 586 596 591 -w 0.557692 >23 595 605 600 -w 0.557692 >24 19 29 24 -w 1.450000 >25 172 182 177 -w 0.390385 >26 495 505 500 -w 0.613462 >27 249 259 254 -w 0.501923 >28 524 534 529 -w 1.505769 >29 239 249 244 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 87 . . . 1.0 3 75 . . . 0.8 4 91 . . . 1.1 5 40 . 55 . 0.9 9 59 . 24 . 0.4 10 87 . . . 1.0 11 53 . . 40 0.4 non- site 31 . . . site 74 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 13 . . . 10 3 9 . . . 8 4 14 . . . 11 5 2 . 9 . 9 9 6 . 1 . 4 10 13 . . . 10 11 4 . . 2 4 site 9 . . . 7 Weighted motif model: POS A C G T Prob 1 0.895424 0.017586 0.039647 0.047342 1.087786 3 0.741578 0.017586 0.212724 0.028111 0.811908 4 0.918152 0.017586 0.036151 0.028111 1.189552 5 0.412907 0.017586 0.541396 0.028111 0.844345 9 0.627942 0.017586 0.237200 0.117272 0.494063 10 0.879690 0.075279 0.016920 0.028111 1.060477 11 0.585984 0.017586 0.039647 0.356783 0.459344 Conservedness in bits: 5.947474 Conservedness in prob: 9.303591 Concensus sequence: AAAGAAA Complete log-likelihood ratio = 216 bits Missing position information = 171 bits Log-likelihood ratio statistic = 45 bits Degrees of freedom = 21 Information per parameter = 2.18 bits MOTIF E 1-1 719 ttcattctac TATTTTCTT gcgcaattgc 727 1.505769 2-1 690 ttgtcttgat TCATTGCTA tggggggttt 698 0.892308 3-1 24 gttacttatc TTATATATT atataaaata 32 1.115385 4-1 645 gaaaaatttg GTTTTTATT tttttaagca 653 0.557692 5-1 528 ttttaaaact TTTTTTTTT tgaaagtcct 536 0.669231 6-1 731 tgtaatcatt TTCTTTCTT ctaatagcta 739 1.840385 7-1 513 gtgcagtcgc TGCTTTTTT ctcgggctga 521 1.840385 8-1 287 agagtgcggt TGATTCGTT ttatacaact 295 0.501923 9-1 692 tatatatacc GGCTTCATA taatatagga 700 0.557692 10-1 669 tcttaagtgt TTTTTTCTT tagtcttata 677 1.840385 11-1 153 acaccgtata TGATAATTA cCAGCAATac 161 0.780769 12-1 494 tgtttgcata TCTTTTTTT ttcagcgatg 502 0.725000 13-1 771 ggaaccgctt TCTTTATTT gaattgtctt 779 2.286538 14-1 164 gggcttatac TTTTTTCTT tactacttta 172 0.613462 15-1 706 caagagagct TCTTTTTTT atgctatcga 714 0.780769 16-1 447 attggccatt TGATTTATA cTTGTTTCag 455 0.501923 17-1 358 cctactcttt TGCTTTTTC atatcatgac 366 0.780769 18-1 689 TGTTTTatca TAATTGTTT gggattaatc 697 0.669231 19-1 389 tcgccttcta TCCTTTGTT tacgtatttg 397 2.788462 20-1 634 tacatatatc TGCTTTTTT tCCCTTTTta 642 0.725000 21-1 694 agcctgtttt TGTTTTTGT TTTTGTTTTG 702 0.725000 22-1 241 aagtcgtata TTTTTCTTT atactgctag 249 0.557692 23-1 657 attgttaacg TTTTTTTTT tttttttaaa 665 0.557692 24-1 347 TGCCTtgtcc TTCTTTGTT tcaagcgttt 355 1.450000 25-1 539 tttgtgttag TATTTTGTG ttttttacaa 547 0.390385 26-1 716 gattcaagaa TATTTCGTT tatcatatcc 724 0.613462 27-1 488 gggCCCAGCA GTCTTTTTT tagaaatcgc 496 0.501923 28-1 295 gctgatacca TCCTTTTAT tctctacacc 303 1.505769 29-1 481 tatattctct TTTTTGTTT tattcttTTC 489 0.725000 sites: * **** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 719 727 723 -w 1.505769 >2 690 698 694 -w 0.892308 >3 24 32 28 -w 1.115385 >4 645 653 649 -w 0.557692 >5 528 536 532 -w 0.669231 >6 731 739 735 -w 1.840385 >7 513 521 517 -w 1.840385 >8 287 295 291 -w 0.501923 >9 692 700 696 -w 0.557692 >10 669 677 673 -w 1.840385 >11 153 161 157 -w 0.780769 >12 494 502 498 -w 0.725000 >13 771 779 775 -w 2.286538 >14 164 172 168 -w 0.613462 >15 706 714 710 -w 0.780769 >16 447 455 451 -w 0.501923 >17 358 366 362 -w 0.780769 >18 689 697 693 -w 0.669231 >19 389 397 393 -w 2.788462 >20 634 642 638 -w 0.725000 >21 694 702 698 -w 0.725000 >22 241 249 245 -w 0.557692 >23 657 665 661 -w 0.557692 >24 347 355 351 -w 1.450000 >25 539 547 543 -w 0.390385 >26 716 724 720 -w 0.613462 >27 488 496 492 -w 0.501923 >28 295 303 299 -w 1.505769 >29 481 489 485 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 84 1.0 3 . 30 . 47 0.3 4 . . . 94 1.3 5 . . . 87 1.0 6 . . . 66 0.4 8 . . . 87 1.0 9 . . . 75 0.6 non- site . . . 30 site . . . 81 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 12 10 3 . 2 . 3 3 4 . . . 15 13 5 . . . 13 10 6 . . . 7 4 8 . . . 13 10 9 . . . 10 6 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.028292 0.017586 0.067619 0.886503 1.089532 3 0.168152 0.393460 0.016920 0.421468 0.383438 4 0.028292 0.017586 0.016920 0.937202 1.282005 5 0.087732 0.017586 0.016920 0.877762 1.041554 6 0.124445 0.087516 0.088598 0.699440 0.464036 8 0.075494 0.017586 0.039647 0.867272 0.986798 9 0.113956 0.042062 0.029158 0.814825 0.803254 Conservedness in bits: 6.050617 Conservedness in prob: 9.711842 Concensus sequence: TCTTTTT Complete log-likelihood ratio = 207 bits Missing position information = 147 bits Log-likelihood ratio statistic = 59 bits Degrees of freedom = 21 Information per parameter = 2.83 bits MOTIF F 1-1 543 aaatcccgtg AAAAAAAT ttatatcgcc 550 1.505769 2-1 356 cgtaagtctc AAAAAAAA attgggttac 363 0.892308 3-1 682 attacggatg CAAGAAAA ggagaagggc 689 1.115385 4-1 706 acatactgct CAAAAAAT cttcataaca 713 0.557692 5-1 792 caAAAAAAAA AAAAAAAA a 799 0.669231 6-1 39 ggtagttgag AAAAAAAC cggaaaggaa 46 1.840385 7-1 144 gaaacaaaaa AAAAAAAA gtaaaaattt 151 1.840385 8-1 511 gctcgtatca AAATAAAA ctagtcagtc 518 0.501923 9-1 720 aaCAAAAGAA AAAGAAAA ctggaaaaag 727 0.557692 10-1 200 agtttattag AAACAAAT gtgaatagat 207 1.840385 11-1 611 actcttggaa AAATAAAA ataaaaagtg 618 0.780769 12-1 744 accatccttt ACACAAAG tctatagatc 751 0.725000 13-1 368 tttcaaaatg AAACAAAC gccgttgtcc 375 2.286538 14-1 331 agtgataact CAAAAAAC AAGAGTACAA 338 0.613462 15-1 135 ctctgcatac TAAGAAAC ttaaactatc 142 0.780769 16-1 415 aacattgcca CATAAAAC aggcttgaca 422 0.501923 17-1 138 ggcccacaag AAACAAAC gaatctttga 145 0.780769 18-1 571 cgtctatatt AAAAAAAA ggcagcataa 578 0.669231 19-1 643 ctgtaatttg AAACAAAT aacgtaattc 650 2.788462 20-1 694 agccaaacca AAATAAAT caaaccaaac 701 0.725000 21-1 780 ttccgcgtaa AAAGGGAA AAAAAGCAGA 787 0.725000 22-1 535 ccgttcgttg CAAGGAAC gcgcgcgcac 542 0.557692 23-1 434 aaaaatcaag AAAAAAAC ctgattatgc 441 0.557692 24-1 437 cctcgaacat AAAACAAC actgaaacaa 444 1.450000 25-1 681 aatgtaaaca AAAAAAAC tgtctaggta 688 0.390385 26-1 320 taagtattta AAAGAAAA gagacgaacc 327 0.613462 27-1 164 Gtgcgggtta CAAGAAAC gattattgat 171 0.501923 28-1 401 tgattattaa AAACAAAC gtaaactcaa 408 1.505769 29-1 253 AAAAAAAaaa AAAAAAAA aaaaatgttc 260 0.725000 sites: *** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 543 550 546 -w 1.505769 >2 356 363 359 -w 0.892308 >3 682 689 685 -w 1.115385 >4 706 713 709 -w 0.557692 >5 792 799 795 -w 0.669231 >6 39 46 42 -w 1.840385 >7 144 151 147 -w 1.840385 >8 511 518 514 -w 0.501923 >9 720 727 723 -w 0.557692 >10 200 207 203 -w 1.840385 >11 611 618 614 -w 0.780769 >12 744 751 747 -w 0.725000 >13 368 375 371 -w 2.286538 >14 331 338 334 -w 0.613462 >15 135 142 138 -w 0.780769 >16 415 422 418 -w 0.501923 >17 138 145 141 -w 0.780769 >18 571 578 574 -w 0.669231 >19 643 650 646 -w 2.788462 >20 694 701 697 -w 0.725000 >21 780 787 783 -w 0.725000 >22 535 542 538 -w 0.557692 >23 434 441 437 -w 0.557692 >24 437 444 440 -w 1.450000 >25 681 688 684 -w 0.390385 >26 320 327 323 -w 0.613462 >27 164 171 167 -w 0.501923 >28 401 408 404 -w 1.505769 >29 253 260 256 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 72 . . . 0.7 2 91 . . . 1.1 3 91 . . . 1.1 5 84 . . . 0.9 6 91 . . . 1.1 7 94 . . . 1.3 8 37 39 . . 0.3 non- site 31 . . . site 84 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . . . 7 2 14 . . . 11 3 14 . . . 11 5 12 . . . 9 6 14 . . . 11 7 15 . . . 13 8 1 4 . . 3 site 12 . . . 10 Weighted motif model: POS A C G T Prob 1 0.792278 0.138216 0.016920 0.052587 0.808117 2 0.914655 0.040313 0.016920 0.028111 1.175616 3 0.921648 0.017586 0.016920 0.043846 1.200681 5 0.851718 0.063041 0.057130 0.028111 0.940554 6 0.914655 0.017586 0.039647 0.028111 1.176074 7 0.937382 0.017586 0.016920 0.028111 1.274533 8 0.313257 0.386467 0.039647 0.260629 0.236078 Conservedness in bits: 6.811653 Conservedness in prob: 10.066846 Concensus sequence: AAAAAAC Complete log-likelihood ratio = 246 bits Missing position information = 184 bits Log-likelihood ratio statistic = 62 bits Degrees of freedom = 21 Information per parameter = 2.95 bits MOTIF G 1-1 663 actccgtctg AGCATCAAGTG aggcttgagt 673 1.505769 2-1 207 gaccaagagc AACCACCATTT ttttttgctc 217 0.892308 3-1 46 taaaatatga ATCATACTAAG tggtggaagc 56 1.115385 4-1 400 tttcctctgc AGCAACAAGTT tccttgatta 410 0.557692 5-1 272 tatcttgtac AACAGAACAAG acaagctgtc 282 0.669231 6-1 218 ccgagaaaaa AGCAGCGACTG cactaaacta 228 1.840385 7-1 580 acctctaaat AACAGCATGAT gcaacagctC 590 1.840385 8-1 370 tactccactc CTAACTTTCAT tgaaaattag 380 0.501923 9-1 444 ccctgaacgg AACAGCGCCTA aaaatagatg 454 0.557692 10-1 230 tgagacgcga AGCCCTATTTT agcggatttt 240 1.840385 11-1 124 ctatctctca ATCATCATACT aTCTTCTTac 134 0.780769 12-1 260 gacattgatc CACAACTAGAT ggatgatttg 270 0.725000 13-1 726 atatttctca AACAAGACTCG tcgaagaaaa 736 2.286538 14-1 628 gtacggttat AACAGCACATT attgaaAAAT 638 0.613462 15-1 408 ggcacccggc AAAGACGCGTT ctggcccctg 418 0.780769 16-1 737 agatttcacc AGCCTCAAGAT aaatttataa 747 0.501923 17-1 15 tttactactg AGCAGCTTGAG gctttcaacc 25 0.780769 18-1 241 agatccaatg ATCAACTCCGG aaatctatcc 251 0.669231 19-1 122 ccagttcatt CTCAGCTTTGG cttccatggc 132 2.788462 20-1 293 aggcacacgc AGAAGCTAGAT acttccagtc 303 0.725000 21-1 142 tcatcgccga ATACGAAACGT acgtcatgca 152 0.725000 22-1 88 ctCAACAGAA AACCGTGCTCG cgttgcagaa 98 0.557692 23-1 726 caattacgca CACAACGCTTT tattagttgt 736 0.557692 24-1 372 gtttatatga CTCCTCTACAG taTTATTTTt 382 1.450000 25-1 496 ccatttactg ATCAAGAATGT cgcacaatct 506 0.390385 26-1 648 gggtagaatg CCCATCTTGTG acaaaaTTGT 658 0.613462 27-1 315 atgccaccag AACACCCTTTT tatagccact 325 0.501923 28-1 449 ggagtacgtg AAAAACGTCCG ttatgcaaaa 459 1.505769 29-1 127 cacgcccatc ATCAACTTATT tattgtatga 137 0.725000 sites: **** * * * 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 663 673 668 -w 1.505769 >2 207 217 212 -w 0.892308 >3 46 56 51 -w 1.115385 >4 400 410 405 -w 0.557692 >5 272 282 277 -w 0.669231 >6 218 228 223 -w 1.840385 >7 580 590 585 -w 1.840385 >8 370 380 375 -w 0.501923 >9 444 454 449 -w 0.557692 >10 230 240 235 -w 1.840385 >11 124 134 129 -w 0.780769 >12 260 270 265 -w 0.725000 >13 726 736 731 -w 2.286538 >14 628 638 633 -w 0.613462 >15 408 418 413 -w 0.780769 >16 737 747 742 -w 0.501923 >17 15 25 20 -w 0.780769 >18 241 251 246 -w 0.669231 >19 122 132 127 -w 2.788462 >20 293 303 298 -w 0.725000 >21 142 152 147 -w 0.725000 >22 88 98 93 -w 0.557692 >23 726 736 731 -w 0.557692 >24 372 382 377 -w 1.450000 >25 496 506 501 -w 0.390385 >26 648 658 653 -w 0.613462 >27 315 325 320 -w 0.501923 >28 449 459 454 -w 1.505769 >29 127 137 132 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 75 . . . 0.8 2 40 . 24 . 0.1 3 . 77 . . 1.2 4 72 . . . 0.7 6 . 68 . . 0.8 8 . 27 . 37 0.2 11 . . 39 53 0.6 non- site 31 19 . . site 37 32 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . . . 8 2 2 . 1 . 1 3 . 15 . . 12 4 9 . . . 7 6 . 12 . . 8 8 . 1 . 1 2 11 . . 4 4 6 site 1 2 . . 1 Weighted motif model: POS A C G T Prob 1 0.729340 0.225628 0.016920 0.028111 0.790461 2 0.388431 0.036817 0.259927 0.314825 0.169496 3 0.161159 0.793810 0.016920 0.028111 1.308083 4 0.725844 0.204649 0.041396 0.028111 0.716421 6 0.106963 0.673181 0.100836 0.119020 0.793172 8 0.320250 0.227376 0.016920 0.435454 0.222766 11 0.045774 0.017586 0.511675 0.424964 0.754040 Conservedness in bits: 4.754438 Conservedness in prob: 8.721121 Concensus sequence: AGCACTG Complete log-likelihood ratio = 167 bits Missing position information = 147 bits Log-likelihood ratio statistic = 19 bits Degrees of freedom = 21 Information per parameter = 0.929 bits MOTIF H 1-1 690 gagtttacgt TTGTTTT taataatcag 696 1.505769 2-1 722 acagtatgtg TTGTTTT tatttcgagt 728 0.892308 3-1 169 tgttataagg TTGTTTC atatgtgttt 175 1.115385 4-1 749 acagtgattg AGCTTTT tgagagaata 755 0.557692 5-1 131 tccaagagat TTGTTTG aatatacttt 137 0.669231 6-1 583 aaatttttac TTTTTTT ttttttgttt 589 1.840385 7-1 689 TCCTTTCcgg TTTTTTT ctcaactacc 695 1.840385 8-1 756 attttaatat TTGTTTT ggcatttgaa 762 0.501923 9-1 202 agagtcttga TTCTTCC catataatat 208 0.557692 10-1 396 tttttatagc GTCTTTT gatgacgcga 402 1.840385 11-1 687 tgatagcttc TTGTTTT aacaatacga 693 0.780769 12-1 432 acctctttgg TTTTGTT aggcgggcaa 438 0.725000 13-1 423 cagataaaaa TTGTTTT aaaagaaacg 429 2.286538 14-1 185 ctactttaga TCTTTTT agatcctttt 191 0.613462 15-1 270 CCTGCaaagt TTGTTTT tataattttg 276 0.780769 16-1 457 TGATTTATAc TTGTTTC agatCCTTTG 463 0.501923 17-1 216 catttttctt TTCTTTT cttttccttt 222 0.780769 18-1 678 cactagcggg TTGTTTT atcaTAATTG 684 0.669231 19-1 482 gcctcaatcc TTCTTTT gcttccatat 488 2.788462 20-1 329 cacaccagat TTCTTGT aaggcaatca 335 0.725000 21-1 710 TGTTTTTGTT TTGTTTT ggtttggttt 716 0.725000 22-1 179 aaccactaac TCCTTTT catcgaaaag 185 0.557692 23-1 779 cagacactcc TTTTTTT cttcatacta 785 0.557692 24-1 385 CTCTACAGta TTATTTT tCAACAGACg 391 1.450000 25-1 418 Ttgagactct TTCTGCA ctttaaatac 424 0.390385 26-1 665 TGTGacaaaa TTGTTTC tgcctccaac 671 0.613462 27-1 738 ttcttctctc TTCTTTC cttcctcgaa 744 0.501923 28-1 547 gcgatataaa TTTTTTT cacgggattt 553 1.505769 29-1 497 TTTtattctt TTCTTTC cttcaaggtt 503 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 690 696 693 -w 1.505769 >2 722 728 725 -w 0.892308 >3 169 175 172 -w 1.115385 >4 749 755 752 -w 0.557692 >5 131 137 134 -w 0.669231 >6 583 589 586 -w 1.840385 >7 689 695 692 -w 1.840385 >8 756 762 759 -w 0.501923 >9 202 208 205 -w 0.557692 >10 396 402 399 -w 1.840385 >11 687 693 690 -w 0.780769 >12 432 438 435 -w 0.725000 >13 423 429 426 -w 2.286538 >14 185 191 188 -w 0.613462 >15 270 276 273 -w 0.780769 >16 457 463 460 -w 0.501923 >17 216 222 219 -w 0.780769 >18 678 684 681 -w 0.669231 >19 482 488 485 -w 2.788462 >20 329 335 332 -w 0.725000 >21 710 716 713 -w 0.725000 >22 179 185 182 -w 0.557692 >23 779 785 782 -w 0.557692 >24 385 391 388 -w 1.450000 >25 418 424 421 -w 0.390385 >26 665 671 668 -w 0.613462 >27 738 744 741 -w 0.501923 >28 547 553 550 -w 1.505769 >29 497 503 500 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.0 2 . . . 84 0.9 3 . 33 39 . 0.4 4 . . . 94 1.3 5 . . . 87 1.1 6 . . . 84 0.9 7 . . . 69 0.6 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 10 2 . . . 12 9 3 . 3 4 . 4 4 . . . 15 13 5 . . . 13 11 6 . . . 12 9 7 . . . 8 6 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.045774 0.017586 0.074612 0.862027 0.989197 2 0.028292 0.054299 0.034403 0.883006 1.055477 3 0.073746 0.313041 0.363074 0.250139 0.337678 4 0.028292 0.017586 0.016920 0.937202 1.282005 5 0.028292 0.017586 0.051885 0.902237 1.139497 6 0.028292 0.047306 0.039647 0.884755 1.059398 7 0.040529 0.143460 0.037899 0.778111 0.767838 Conservedness in bits: 6.631088 Conservedness in prob: 9.949386 Concensus sequence: TTGTTTT Complete log-likelihood ratio = 229 bits Missing position information = 163 bits Log-likelihood ratio statistic = 65 bits Degrees of freedom = 21 Information per parameter = 3.14 bits MOTIF I 1-1 210 cttcagcatt GCTAGCA gcaaaaccaa 216 1.505769 2-1 145 gcgttcgcgt CACAGTG aagtcaggca 151 0.892308 3-1 586 ACAATGCTat ACTTGTA aatagaaaaa 592 1.115385 4-1 3 aa ACGAGCA tgagggttac 9 0.557692 5-1 200 tgaaatttcc GCCAGAA gaaacgctat 206 0.669231 6-1 506 tgatgtacct ACAAGCA atgcataagc 512 1.840385 7-1 333 tgtgcggact ACAAGCA ctaccgcccc 339 1.840385 8-1 261 tcatagtaag CCATGCA gcaatgtaaa 267 0.501923 9-1 500 ccTCTTTTTc CCATGCA tttccttttt 506 0.557692 10-1 328 gctgtaaaaa ACCAGCA gatatcgcat 334 1.840385 11-1 494 aatataagga GCATGTA ccgttgattt 500 0.780769 12-1 388 ctttattttt CCAAGTA aggaaaaata 394 0.725000 13-1 47 ttcgagaata GCAAGCA agttctttta 53 2.286538 14-1 667 AATGTttcag CCCAGTA ataaaacatt 673 0.613462 15-1 182 aaaaaacgca AAAAGCA taccgctggg 188 0.780769 16-1 170 AAATacacgc ACCAGTC aaaaaagaca 176 0.501923 17-1 311 tcttaatttt AACAGCA gttaccactt 317 0.780769 18-1 304 acaaaacgtg CCCAGCG aattcgtgga 310 0.669231 19-1 49 cagcagcaat ACCAGCA acaaggccaa 55 2.788462 20-1 22 gatctgtggc ACAAGTA ggcggcatca 28 0.725000 21-1 552 ttgctgacgt GCCAGTA cctgggccac 558 0.725000 22-1 602 TTTAAgctag CCCAGCG gttaatctac 608 0.557692 23-1 260 aaaaacgtat ACCAGTG ctacaaaccc 266 0.557692 24-1 670 tgaagagtct CCCAGTA gatatataaa 676 1.450000 25-1 379 ttagggcagt ACCAGCA aacgctgcag 385 0.390385 26-1 558 ttaaaaaaaa CCAAGAA cgtataaaaa 564 0.613462 27-1 481 cgagacgggg CCCAGCA GTCTTTTTTt 487 0.501923 28-1 45 gtccaaaact GCCAGTA ttccatacca 51 1.505769 29-1 191 acataatggc ACCAGTA ataaatgatg 197 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 210 216 213 -w 1.505769 >2 145 151 148 -w 0.892308 >3 586 592 589 -w 1.115385 >4 3 9 6 -w 0.557692 >5 200 206 203 -w 0.669231 >6 506 512 509 -w 1.840385 >7 333 339 336 -w 1.840385 >8 261 267 264 -w 0.501923 >9 500 506 503 -w 0.557692 >10 328 334 331 -w 1.840385 >11 494 500 497 -w 0.780769 >12 388 394 391 -w 0.725000 >13 47 53 50 -w 2.286538 >14 667 673 670 -w 0.613462 >15 182 188 185 -w 0.780769 >16 170 176 173 -w 0.501923 >17 311 317 314 -w 0.780769 >18 304 310 307 -w 0.669231 >19 49 55 52 -w 2.788462 >20 22 28 25 -w 0.725000 >21 552 558 555 -w 0.725000 >22 602 608 605 -w 0.557692 >23 260 266 263 -w 0.557692 >24 670 676 673 -w 1.450000 >25 379 385 382 -w 0.390385 >26 558 564 561 -w 0.613462 >27 481 487 484 -w 0.501923 >28 45 51 48 -w 1.505769 >29 191 197 194 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 33 . . 0.4 2 . 83 . . 1.4 3 . 52 . . 0.5 4 81 . . . 0.8 5 . . 93 . 1.9 6 . 49 . 40 0.6 7 78 . . . 0.8 non- site 31 19 . . site 37 33 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 3 . . 4 2 . 18 . . 14 3 . 7 . . 5 4 11 . . . 8 5 . . 21 . 19 6 . 7 . 2 6 7 10 . . . 8 site 1 3 . . 2 Weighted motif model: POS A C G T Prob 1 0.481089 0.239614 0.251186 0.028111 0.387708 2 0.105215 0.849754 0.016920 0.028111 1.493912 3 0.362208 0.493111 0.034403 0.110279 0.497152 4 0.844725 0.017586 0.016920 0.120769 0.933734 5 0.028292 0.017586 0.926011 0.028111 1.887562 6 0.068501 0.563041 0.016920 0.351538 0.724736 7 0.837732 0.033320 0.100836 0.028111 0.925836 Conservedness in bits: 6.850640 Conservedness in prob: 10.838795 Concensus sequence: ACCAGCA Complete log-likelihood ratio = 238 bits Missing position information = 180 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.79 bits MOTIF J 1-1 402 tacctcttgc CAGCAAC aggccagttA 408 1.505769 2-1 172 gccgtcccct CAGCAAT gttgaagatt 178 0.892308 3-1 397 ttctcgagaa CAGCAAT gcccacagtt 403 1.115385 4-1 473 cgaataaggg CAGAAAT taatcaaatt 479 0.557692 5-1 165 caaatgttga CAGCAAT ggctcaaggt 171 0.669231 6-1 661 aattgcagaa AAGCAAC atactaatat 667 1.840385 7-1 672 aagatcttta AAGCAAT TCCTTTCcgg 678 1.840385 8-1 646 cgtttggctg AAGCAAC tttgaaacac 652 0.501923 9-1 609 ctcacccttt CAACAAG tttattgggc 615 0.557692 10-1 779 ttcaatacgg CAGCAAC tttttactac 785 1.840385 11-1 163 TGATAATTAc CAGCAAT actaatgcta 169 0.780769 12-1 640 aaattattaa AAGAAAA taaaactatc 646 0.725000 13-1 334 atttgaaaca CAGCATT tcttttcgga 340 2.286538 14-1 404 ttatcattgt CAGCAAT ttcggagaag 410 0.613462 15-1 227 tacacgagaa AAGAAAC atgattgact 233 0.780769 16-1 157 aaaaaaaact CAGAAAT acacgcACCA 163 0.501923 17-1 665 agttcccagc AAGCAAT taaaacgtat 671 0.780769 18-1 630 ccacgcaaat AAACAAT gtaaataaga 636 0.669231 19-1 9 ccaaccaa CAGCAAT acaatcaACA 15 2.788462 20-1 436 gccaatttat CAGCAAT tgctctgagt 442 0.725000 21-1 290 cacgctgttg CAGCAGC gagtccagct 296 0.725000 22-1 573 gatgcttccg CAGAAGT gcccgtAGGA 579 0.557692 23-1 574 gggtattttc CACCAAC tttattggca 580 0.557692 24-1 186 gtctcttccc CAGCAAT tatgtgtctt 192 1.450000 25-1 267 actgtgaaat CAGTAAT gcaaactgaa 273 0.390385 26-1 391 ctaacgcgtt CCGCAAT taagtttgtt 397 0.613462 27-1 288 gcttcgccta CCGCAAT gacgttcgat 294 0.501923 28-1 238 atgcctaagg CACCAAT cagcccacca 244 1.505769 29-1 771 atactcgtat AAGCAAG aaataaagat 777 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 402 408 405 -w 1.505769 >2 172 178 175 -w 0.892308 >3 397 403 400 -w 1.115385 >4 473 479 476 -w 0.557692 >5 165 171 168 -w 0.669231 >6 661 667 664 -w 1.840385 >7 672 678 675 -w 1.840385 >8 646 652 649 -w 0.501923 >9 609 615 612 -w 0.557692 >10 779 785 782 -w 1.840385 >11 163 169 166 -w 0.780769 >12 640 646 643 -w 0.725000 >13 334 340 337 -w 2.286538 >14 404 410 407 -w 0.613462 >15 227 233 230 -w 0.780769 >16 157 163 160 -w 0.501923 >17 665 671 668 -w 0.780769 >18 630 636 633 -w 0.669231 >19 9 15 12 -w 2.788462 >20 436 442 439 -w 0.725000 >21 290 296 293 -w 0.725000 >22 573 579 576 -w 0.557692 >23 574 580 577 -w 0.557692 >24 186 192 189 -w 1.450000 >25 267 273 270 -w 0.390385 >26 391 397 394 -w 0.613462 >27 288 294 291 -w 0.501923 >28 238 244 241 -w 1.505769 >29 771 777 774 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 68 . . 1.0 2 87 . . . 1.0 3 . . 80 . 1.3 4 . 74 . . 1.1 5 94 . . . 1.3 6 84 . . . 0.9 7 . 24 . 62 0.5 non- site 31 19 . . site 48 27 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 12 . . 10 2 13 . . . 10 3 . . 17 . 13 4 . 14 . . 11 5 15 . . . 13 6 12 . . . 9 7 . 1 . 6 5 site 3 1 . . 2 Weighted motif model: POS A C G T Prob 1 0.274795 0.680174 0.016920 0.028111 1.028691 2 0.902417 0.052551 0.016920 0.028111 1.131455 3 0.066753 0.082272 0.822864 0.028111 1.417577 4 0.126194 0.816537 0.016920 0.040349 1.354999 5 0.937382 0.017586 0.016920 0.028111 1.274533 6 0.825494 0.017586 0.057130 0.099790 0.840779 7 0.051019 0.260593 0.057130 0.631258 0.531504 Conservedness in bits: 7.579537 Conservedness in prob: 11.599588 Concensus sequence: CAGCAAT Complete log-likelihood ratio = 261 bits Missing position information = 205 bits Log-likelihood ratio statistic = 55 bits Degrees of freedom = 21 Information per parameter = 2.67 bits seed 1 time: 19 seconds (0.32 minutes) MOTIF A 1-1 730 attttcttgc GCAATTGC ttatcagata 737 1.505769 2-1 575 agagtcctgt GGAATTGC cgtacaaaaa 582 0.892308 3-1 61 actaagtggt GGAAGCGC ggaatctcgg 68 1.115385 4-1 621 tgtgcaacgt ACAAGAGC aaagtagaaa 628 0.557692 5-1 167 aatgttgaca GCAATGGC tcaaggttat 174 0.669231 6-1 53 AAAccggaaa GGAATTGC tttaaagatc 60 1.840385 7-1 206 gatctaaaac TCAAGAGC ttatgcattg 213 1.840385 8-1 57 cacgttctga GGCATCGC ctatgctgtt 64 0.501923 9-1 315 taccgatcat GGAAAAGC tctccaacga 322 0.557692 10-1 536 gtgcaaattg GGAAGAGA tctattgttc 543 1.840385 11-1 511 ccgttgattt TGAAGAGC caattgctcc 518 0.780769 12-1 588 cgtaaaggtt TCAAATGC gaaggtacct 595 0.725000 13-1 80 aaagatatgt TGAAAAGC gacgggcaac 87 2.286538 14-1 406 atcattgtca GCAATTTC ggagaagggg 413 0.613462 15-1 443 cttaagcact GGAATGGC tccgaggatt 450 0.780769 16-1 216 Ccttctcaat GCAAAAGC ttctgaaAAA 223 0.501923 17-1 79 aattggatct TGAGTTGC aaaaggatgt 86 0.780769 18-1 492 gttataataa GGAATTTA aaaagtactt 499 0.669231 19-1 141 ggcttccatg GCAAGTTC ctacctgggc 148 2.788462 20-1 567 gttcagtgct TCAAACTC agattgacca 574 0.725000 21-1 426 tatttgttgc TGCAGAGC ggtgcgctgg 433 0.725000 22-1 492 tattagcagc GGAATATC tttgtttact 499 0.557692 23-1 52 actaagtggt GGAAGCGC ggaatctcgg 59 0.557692 24-1 392 GTATTAtttt TCAACAGA cggtgtgccc 399 1.450000 25-1 58 caggattgtg GCAAGGGC aatcgggcac 65 0.390385 26-1 92 actaaatgat GGAAGCGC ggaatctcgg 99 0.613462 27-1 527 aacgcgataa TGACGCGA cacagccatt 534 0.501923 28-1 106 agatagtagc GCAATGGC ttgataccgt 113 1.505769 29-1 518 aaggttcttt GCAACAGC actgaaaata 525 0.725000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 730 737 733 -w 1.505769 >2 575 582 578 -w 0.892308 >3 61 68 64 -w 1.115385 >4 621 628 624 -w 0.557692 >5 167 174 170 -w 0.669231 >6 53 60 56 -w 1.840385 >7 206 213 209 -w 1.840385 >8 57 64 60 -w 0.501923 >9 315 322 318 -w 0.557692 >10 536 543 539 -w 1.840385 >11 511 518 514 -w 0.780769 >12 588 595 591 -w 0.725000 >13 80 87 83 -w 2.286538 >14 406 413 409 -w 0.613462 >15 443 450 446 -w 0.780769 >16 216 223 219 -w 0.501923 >17 79 86 82 -w 0.780769 >18 492 499 495 -w 0.669231 >19 141 148 144 -w 2.788462 >20 567 574 570 -w 0.725000 >21 426 433 429 -w 0.725000 >22 492 499 495 -w 0.557692 >23 52 59 55 -w 0.557692 >24 392 399 395 -w 1.450000 >25 58 65 61 -w 0.390385 >26 92 99 95 -w 0.613462 >27 527 534 530 -w 0.501923 >28 106 113 109 -w 1.505769 >29 518 525 521 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 61 . 0.9 2 . 43 52 . 1.1 3 87 . . . 1.0 4 87 . . . 1.0 5 . . 36 37 0.2 7 . . 77 . 1.3 8 . 80 . . 1.3 non- site . . 18 . site . . 34 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 11 . 9 2 . 5 8 . 11 3 13 . . . 10 4 13 . . . 10 5 . . 3 1 2 7 . . 16 . 13 8 . 16 . . 13 site . . 3 . 2 Weighted motif model: POS A C G T Prob 1 0.045774 0.017586 0.600836 0.335804 0.868386 2 0.028292 0.456397 0.487200 0.028111 1.046422 3 0.898921 0.056048 0.016920 0.028111 1.119684 4 0.897173 0.033320 0.041396 0.028111 1.098869 5 0.178641 0.085768 0.384053 0.351538 0.222704 7 0.028292 0.017586 0.758179 0.195943 1.248614 8 0.168152 0.786817 0.016920 0.028111 1.287460 Conservedness in bits: 6.892140 Conservedness in prob: 11.232287 Concensus sequence: GGAAGGC Complete log-likelihood ratio = 252 bits Missing position information = 189 bits Log-likelihood ratio statistic = 63 bits Degrees of freedom = 21 Information per parameter = 3.01 bits MOTIF B 1-1 569 cctttcgctc TTTTGTAT gtaggcatca 576 1.505769 2-1 720 ggacagtatg TGTTGTTT ttatttcgag 727 0.892308 3-1 179 ttgtttcata TGTGTTTT atgaacgttc 186 1.115385 4-1 749 acagtgattg AGCTTTTT gagagaataa 756 0.557692 5-1 129 gttccaagag ATTTGTTT gaatatactt 136 0.669231 6-1 684 atatatcata ACTTTTTA ctcTTGCCTC 691 1.840385 7-1 512 agtgcagtcg CTGCTTTT ttctcgggct 519 1.840385 8-1 427 catagtgata TTTGTTTG tttaccattt 434 0.501923 9-1 509 cccatgcatt TCCTTTTT gagtagtacg 516 0.557692 10-1 191 TTGTagtata GTTTATTA gaaacaaatg 198 1.840385 11-1 625 aAAAATAAAA AGTGGTCT cagaattgtt 632 0.780769 12-1 496 tttgcatatc TTTTTTTT tcagcgatgc 503 0.725000 13-1 421 AACAgataaa AATTGTTT taaaagaaac 428 2.286538 14-1 234 cttTAAAAGC GAGTTTTT gatttagaaa 241 0.613462 15-1 577 cgtgatcaat TCGTGTTT gcaagctagt 584 0.780769 16-1 445 atattggcca TTTGATTT aTACTTGTTT 452 0.501923 17-1 336 ttgaatgaga AACTTTTT gatgcctact 343 0.780769 18-1 776 CTGGTTCaac AACTGTTT ctattcaaaa 783 0.669231 19-1 527 caaaacagag TTGTATCT ctgcaggatg 534 2.788462 20-1 410 atattggcgt AAGCATTG agtggcccgc 417 0.725000 21-1 629 tgctggccat TCTTGTAT gtgtgtatgt 636 0.725000 22-1 446 cacgtcctgc ACGGTTTT gcagactgct 453 0.557692 23-1 664 acgttttttt TTTTTTTT taaaggcatt 671 0.557692 24-1 380 gactcctcta CAGTATTA ttttTCAACA 387 1.450000 25-1 441 atacaataaa TCGTGTAA taagcaagta 448 0.390385 26-1 208 TTTgttataa AGTTGTTT catatgtgtt 215 0.613462 27-1 584 taggtataat ATTTGTTA caaattattg 591 0.501923 28-1 316 tctacaccga ATTTGTCT ttactcctat 323 1.505769 29-1 298 tcaaaagctt ATTTGTTT gttatctgtt 305 0.725000 sites: * ****** 5 (29 sites in 29 sequences) Conservedness in sites: >1 569 576 572 -w 1.505769 >2 720 727 723 -w 0.892308 >3 179 186 182 -w 1.115385 >4 749 756 752 -w 0.557692 >5 129 136 132 -w 0.669231 >6 684 691 687 -w 1.840385 >7 512 519 515 -w 1.840385 >8 427 434 430 -w 0.501923 >9 509 516 512 -w 0.557692 >10 191 198 194 -w 1.840385 >11 625 632 628 -w 0.780769 >12 496 503 499 -w 0.725000 >13 421 428 424 -w 2.286538 >14 234 241 237 -w 0.613462 >15 577 584 580 -w 0.780769 >16 445 452 448 -w 0.501923 >17 336 343 339 -w 0.780769 >18 776 783 779 -w 0.669231 >19 527 534 530 -w 2.788462 >20 410 417 413 -w 0.725000 >21 629 636 632 -w 0.725000 >22 446 453 449 -w 0.557692 >23 664 671 667 -w 0.557692 >24 380 387 383 -w 1.450000 >25 441 448 444 -w 0.390385 >26 208 215 211 -w 0.613462 >27 584 591 587 -w 0.501923 >28 316 323 319 -w 1.505769 >29 298 305 301 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 . . 40 0.2 3 . . 27 56 0.5 4 . . . 72 0.7 5 . . 42 37 0.4 6 . . . 94 1.3 7 . . . 75 0.6 8 . . . 72 0.6 non- site . . . 30 site . . . 66 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 . . 2 2 3 . . 1 5 5 4 . . . 9 7 5 . . 5 1 4 6 . . . 15 13 7 . . . 10 6 8 . . . 9 6 site . . . 7 4 Weighted motif model: POS A C G T Prob 1 0.411159 0.120733 0.093843 0.374265 0.093465 3 0.028292 0.098006 0.303633 0.570069 0.523453 4 0.028292 0.098006 0.125312 0.748391 0.688768 5 0.257313 0.017586 0.394542 0.330559 0.328046 6 0.028292 0.017586 0.016920 0.937202 1.282005 7 0.110459 0.176677 0.016920 0.695943 0.567760 8 0.217103 0.017586 0.055382 0.709929 0.580750 Conservedness in bits: 4.064247 Conservedness in prob: 7.612434 Concensus sequence: ATTGTTT Complete log-likelihood ratio = 156 bits Missing position information = 134 bits Log-likelihood ratio statistic = 21 bits Degrees of freedom = 21 Information per parameter = 1.02 bits MOTIF C 1-1 514 tgtcgttcat TTTATTTT cacctaaacg 521 1.505769 2-1 39 agtcctaaac TTTGTTTG attATGAAAG 46 0.892308 3-1 225 actgacatat CTCATTTT gagatacaac 232 1.115385 4-1 390 ttacctccta TTTCCTCT gcagcaacaa 397 0.557692 5-1 714 gtctgttaaa TGTTTTTT atctcaggtt 721 0.669231 6-1 578 actcgaaatt TTTACTTT tttttTTTTT 585 1.840385 7-1 413 cttatgtatg TTCTTTTG aacgtcaagt 420 1.840385 8-1 573 tttactgtat TATTTTTT gatatccaca 580 0.501923 9-1 475 ggcactcact TTTCCTTT ttcgctgcct 482 0.557692 10-1 701 tctcctttct TTCACTTT ataattctcc 708 1.840385 11-1 406 ttttttttaa TTTATTTT tgtgttgcaa 413 0.780769 12-1 715 aaaatttcta TTTACTTT tatatttctt 722 0.725000 13-1 577 taccactacg TTCCTTTT acaattagat 584 2.286538 14-1 166 gcttatactt TTTTCTTT actactttag 173 0.613462 15-1 83 gtaactattt CTTACTCT tgcgctgagg 90 0.780769 16-1 318 aatcaatctg TTCGCTTT aaggaagatc 325 0.501923 17-1 151 caaacgaatc TTTGATTG acgcaaagac 158 0.780769 18-1 332 aaatttatac TGTCTTTT gcacttcaag 339 0.669231 19-1 422 tatatataac TTTATTTT tttttattaa 429 2.788462 20-1 642 tctgcttttt TTCCCTTT ttacgcggaa 649 0.725000 21-1 696 CCTGTTTTtg TTTTTGTT tttgttttgT 703 0.725000 22-1 218 tACTAAAGCA TTCCTCTT tatccaagtc 225 0.557692 23-1 780 agacactcct TTTTTTCT tcatactata 787 0.557692 24-1 726 tccacgtctt TCTGTATT ttcatacctt 733 1.450000 25-1 542 gTGTTAGTAT TTTGTGTT ttttacaaca 549 0.390385 26-1 193 gcccattttg TTCGCTTT gttataaAGT 200 0.613462 27-1 622 atatctcggg TTCATTTT ttacgtcggt 629 0.501923 28-1 771 gttaggatga TTCCCTTT cgaatttgtg 778 1.505769 29-1 483 tattctcttt TTTGTTTT attcttttct 490 0.725000 sites: *** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 514 521 517 -w 1.505769 >2 39 46 42 -w 0.892308 >3 225 232 228 -w 1.115385 >4 390 397 393 -w 0.557692 >5 714 721 717 -w 0.669231 >6 578 585 581 -w 1.840385 >7 413 420 416 -w 1.840385 >8 573 580 576 -w 0.501923 >9 475 482 478 -w 0.557692 >10 701 708 704 -w 1.840385 >11 406 413 409 -w 0.780769 >12 715 722 718 -w 0.725000 >13 577 584 580 -w 2.286538 >14 166 173 169 -w 0.613462 >15 83 90 86 -w 0.780769 >16 318 325 321 -w 0.501923 >17 151 158 154 -w 0.780769 >18 332 339 335 -w 0.669231 >19 422 429 425 -w 2.788462 >20 642 649 645 -w 0.725000 >21 696 703 699 -w 0.725000 >22 218 225 221 -w 0.557692 >23 780 787 783 -w 0.557692 >24 726 733 729 -w 1.450000 >25 542 549 545 -w 0.390385 >26 193 200 196 -w 0.613462 >27 622 629 625 -w 0.501923 >28 771 778 774 -w 1.505769 >29 483 490 486 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.1 2 . . . 81 0.8 3 . 33 . 62 0.7 5 . 36 . 56 0.6 6 . . . 81 0.8 7 . . . 84 1.0 8 . . . 84 1.0 non- site . . . 30 site . . . 81 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 11 2 . . . 11 8 3 . 3 . 6 7 5 . 3 . 5 6 6 . . . 11 8 7 . . . 12 10 8 . . . 12 10 site . . . 11 9 Weighted motif model: POS A C G T Prob 1 0.028292 0.077027 0.016920 0.877762 1.062448 2 0.044026 0.063041 0.058878 0.834055 0.869988 3 0.028292 0.377726 0.016920 0.577062 0.727646 5 0.052767 0.339265 0.016920 0.591048 0.633743 6 0.073746 0.035069 0.051885 0.839300 0.873837 7 0.028292 0.077027 0.016920 0.877762 1.062448 8 0.028292 0.017586 0.127060 0.827062 0.945199 Conservedness in bits: 6.175309 Conservedness in prob: 9.201735 Concensus sequence: TTCTTTT Complete log-likelihood ratio = 222 bits Missing position information = 164 bits Log-likelihood ratio statistic = 58 bits Degrees of freedom = 21 Information per parameter = 2.79 bits MOTIF D 1-1 272 cacccaattg CAAATAGCA tttaaaaccg 280 1.505769 2-1 50 TTGTTTGatt ATGAAAGCA acccggaagg 58 0.892308 3-1 393 gcttttctcg AGAACAGCA atgcccacag 401 1.115385 4-1 135 tgctatctca AGAATTGCA ttttgtaata 143 0.557692 5-1 451 taccttaaat AGAAAAGGA aagataataa 459 0.669231 6-1 657 aaacaattgc AGAAAAGCA acatactaat 665 1.840385 7-1 578 taacctctaa ATAACAGCA tgaTGCAACA 586 1.840385 8-1 730 ccgtgtatat ATAAGAGCT attcactatt 738 0.501923 9-1 609 ctcacccttt CAACAAGTT tattgggccc 617 0.557692 10-1 758 acctgatccg ACAAGAGCA atttcaatac 766 1.840385 11-1 593 aggaaacccg CTGATTGCA ctcttggaaa 601 0.780769 12-1 784 tcgtgggcgt AAGAAGGCA atctatta 792 0.725000 13-1 41 gttttgttcg AGAATAGCA agcaagttct 49 2.286538 14-1 626 ttgtacggtt ATAACAGCA cattattgaa 634 0.613462 15-1 164 ccattgtctc AAAATAGCA aaaaacgcaa 172 0.780769 16-1 716 catatttaaa ATACTTGGA atagatttca 724 0.501923 17-1 661 aagcagttcc CAGCAAGCA attaaaacgt 669 0.780769 18-1 585 AAAaggcagc ATAAGAGCA actcactgca 593 0.669231 19-1 47 Accagcagca ATACCAGCA acaaggccaa 55 2.788462 20-1 243 aggccccgtc AGAATACCA gaatggaaca 251 0.725000 21-1 25 tcgccctgga CGGTAAGCA cgtgctcaag 33 0.725000 22-1 209 ggtgtagctt ACTAAAGCA TTCCTCTTta 217 0.557692 23-1 759 taaactgtgt AGATTAGCA gcagacactc 767 0.557692 24-1 651 gttaagatta AGAAATGCA tgaagagtct 659 1.450000 25-1 332 caaatttgga CTAAAGGGT ttttatcgag 340 0.390385 26-1 623 agactacaat AATACAGCA aggatggggt 631 0.613462 27-1 433 atacaagtaa ATACATGCA ggaaacatac 441 0.501923 28-1 208 aTGATAGTga AAACAGGCA gccctatgct 216 1.505769 29-1 183 cagcttttac ATAATGGCA ccagtaataa 191 0.725000 sites: * ** **** 5 (29 sites in 29 sequences) Conservedness in sites: >1 272 280 276 -w 1.505769 >2 50 58 54 -w 0.892308 >3 393 401 397 -w 1.115385 >4 135 143 139 -w 0.557692 >5 451 459 455 -w 0.669231 >6 657 665 661 -w 1.840385 >7 578 586 582 -w 1.840385 >8 730 738 734 -w 0.501923 >9 609 617 613 -w 0.557692 >10 758 766 762 -w 1.840385 >11 593 601 597 -w 0.780769 >12 784 792 788 -w 0.725000 >13 41 49 45 -w 2.286538 >14 626 634 630 -w 0.613462 >15 164 172 168 -w 0.780769 >16 716 724 720 -w 0.501923 >17 661 669 665 -w 0.780769 >18 585 593 589 -w 0.669231 >19 47 55 51 -w 2.788462 >20 243 251 247 -w 0.725000 >21 25 33 29 -w 0.725000 >22 209 217 213 -w 0.557692 >23 759 767 763 -w 0.557692 >24 651 659 655 -w 1.450000 >25 332 340 336 -w 0.390385 >26 623 631 627 -w 0.613462 >27 433 441 437 -w 0.501923 >28 208 216 212 -w 1.505769 >29 183 191 187 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 75 . . . 0.8 3 72 . . . 0.6 4 69 . . . 0.6 6 66 . . . 0.5 7 . . 89 . 1.7 8 . 80 . . 1.3 9 84 . . . 0.9 non- site 31 . . . site 55 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 9 . . . 8 3 9 . . . 6 4 8 . . . 6 6 7 . . . 5 7 . . 20 . 17 8 . 16 . . 13 9 12 . . . 9 site 5 . . . 3 Weighted motif model: POS A C G T Prob 1 0.788781 0.166188 0.016920 0.028111 0.866147 3 0.778292 0.017586 0.139298 0.064825 0.764050 4 0.689131 0.225628 0.016920 0.068321 0.633102 6 0.713606 0.017586 0.121815 0.146992 0.561325 7 0.028292 0.040313 0.903284 0.028111 1.772194 8 0.028292 0.860244 0.065871 0.045594 1.529430 9 0.891928 0.017586 0.016920 0.073566 1.083119 Conservedness in bits: 7.209366 Conservedness in prob: 10.959136 Concensus sequence: AAAAGCA Complete log-likelihood ratio = 237 bits Missing position information = 187 bits Log-likelihood ratio statistic = 49 bits Degrees of freedom = 21 Information per parameter = 2.38 bits MOTIF E 1-1 219 tgctagcagc AAAACCAAA gtatacttat 227 1.505769 2-1 456 gttttcgtat AATATTAAA gggatcgtgt 464 0.892308 3-1 681 tattacggat GCAAGAAAA ggagaagggc 689 1.115385 4-1 222 aaccatcttt ATCACAAAA tatacaatta 230 0.557692 5-1 764 aattatagta AACAAACAA acaaacaaac 772 0.669231 6-1 12 ggcaaaataa AAAAGGAAA aagagtacgg 20 1.840385 7-1 549 gaaaagaagg AAAAACCAA ggtcaaaaaa 557 1.840385 8-1 307 tatacaactt AATGTAAAG ctttacactt 315 0.501923 9-1 713 atataggaac AAAAGAAAA agaaaactgg 721 0.557692 10-1 429 gacttcgcgt AACACGAAA aatgctggtg 437 1.840385 11-1 616 tggaaaaata AAAATAAAA AGTGGTCTca 624 0.780769 12-1 638 tcaaattatt AAAAGAAAA taaaactatc 646 0.725000 13-1 162 aggaacccat AAAGCTAAA gacatttgtt 170 2.286538 14-1 780 acttttcgat AAAACTAAG agtacggcaa 788 0.613462 15-1 328 aatattccag AAAAAGAAA ttccttcttt 336 0.780769 16-1 231 AGCttctgaa AAAGAGAAA agtgagtgcg 239 0.501923 17-1 767 ggcgagcatt AACAATAAA agctaaaaaa 775 0.780769 18-1 387 tagatacata TAAGATCAA actaagtcat 395 0.669231 19-1 621 tgatgaaaca AACATGAAA cgtctgtaat 629 2.788462 20-1 730 AACAAaaaca AAAACAAAA acaggctaag 738 0.725000 21-1 753 gcttaaatct TCGAGGAAA tttgcgcttt 761 0.725000 22-1 139 ttaggaacat AAAAATAAA tatctcgcgc 147 0.557692 23-1 431 tAAAAAAAtc AAGAAAAAA acctgattat 439 0.557692 24-1 20 actccagaga AAAAGCCAA aggaaaatcc 28 1.450000 25-1 678 tcgaatgtaa ACAAAAAAA actgtctagg 686 0.390385 26-1 319 ataagtattt AAAAGAAAA gagacgaacc 327 0.613462 27-1 250 ggctggaaca GAAGTCAAA tgaggatgac 258 0.501923 28-1 254 tcagcccacc AAATTCAAA ctctgtagtt 262 1.505769 29-1 242 accggccaaa AAAAAAAAA aaAAAAAAAa 250 0.725000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 219 227 223 -w 1.505769 >2 456 464 460 -w 0.892308 >3 681 689 685 -w 1.115385 >4 222 230 226 -w 0.557692 >5 764 772 768 -w 0.669231 >6 12 20 16 -w 1.840385 >7 549 557 553 -w 1.840385 >8 307 315 311 -w 0.501923 >9 713 721 717 -w 0.557692 >10 429 437 433 -w 1.840385 >11 616 624 620 -w 0.780769 >12 638 646 642 -w 0.725000 >13 162 170 166 -w 2.286538 >14 780 788 784 -w 0.613462 >15 328 336 332 -w 0.780769 >16 231 239 235 -w 0.501923 >17 767 775 771 -w 0.780769 >18 387 395 391 -w 0.669231 >19 621 629 625 -w 2.788462 >20 730 738 734 -w 0.725000 >21 753 761 757 -w 0.725000 >22 139 147 143 -w 0.557692 >23 431 439 435 -w 0.557692 >24 20 28 24 -w 1.450000 >25 678 686 682 -w 0.390385 >26 319 327 323 -w 0.613462 >27 250 258 254 -w 0.501923 >28 254 262 258 -w 1.505769 >29 242 250 246 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 81 . . . 0.8 2 81 . . . 0.8 3 66 . . . 0.4 4 75 . . . 0.7 7 81 . . . 0.9 8 94 . . . 1.3 9 87 . . . 1.0 non- site 31 . . . site 85 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 11 . . . 8 2 11 . . . 8 3 7 . . . 4 4 9 . . . 7 7 11 . . . 9 8 15 . . . 13 9 13 . . . 10 site 13 . . . 10 Weighted motif model: POS A C G T Prob 1 0.842977 0.017586 0.067619 0.071818 0.901002 2 0.849970 0.087516 0.016920 0.045594 0.947464 3 0.645424 0.225628 0.057130 0.071818 0.480707 4 0.750320 0.017586 0.156780 0.075314 0.699524 7 0.792278 0.162691 0.016920 0.028111 0.871669 8 0.937382 0.017586 0.016920 0.028111 1.274533 9 0.902417 0.017586 0.051885 0.028111 1.132338 Conservedness in bits: 6.307238 Conservedness in prob: 9.683978 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 225 bits Missing position information = 184 bits Log-likelihood ratio statistic = 41 bits Degrees of freedom = 21 Information per parameter = 1.98 bits MOTIF F 1-1 405 ctcttgccag CAACAGG ccagttataa 411 1.505769 2-1 285 gtagtgagtc CAAACGG ctcattttga 291 0.892308 3-1 341 tttcttttta AAACAGG atgctaaagc 347 1.115385 4-1 336 ctttctatgc AAGAATG caAGAAAAAt 342 0.557692 5-1 271 ctatcttgta CAACAGA acaagacaag 277 0.669231 6-1 786 gcagagaaaa AGAAAGG aaaataat 792 1.840385 7-1 624 agaagcacaa AAAAAGG aggcgagtag 630 1.840385 8-1 99 ccatctgatc TAGCAGG tcaaacaact 105 0.501923 9-1 186 aaagaggtgg AAGGCAA gagtcttgat 192 0.557692 10-1 723 ttctccttta TAAAAGT aagacccggt 729 1.840385 11-1 644 agaattgttt CAAAAGT ggcacTGACA 650 0.780769 12-1 550 gaaaatacct AAAAAGG aaataggcaa 556 0.725000 13-1 640 gccattcata AAATAGG aaaagataac 646 2.286538 14-1 227 aagactgctt TAAAAGC GAGTTTTTga 233 0.613462 15-1 616 tccgaaaaag AAACTGA aaatgtaaaa 622 0.780769 16-1 200 ttaagcgaag AAGCAGC cttctcaatG 206 0.501923 17-1 310 atcttaattt TAACAGC agttaccact 316 0.780769 18-1 44 tttgcattca TAGCAGA tcttgcaccc 50 0.669231 19-1 81 tcagcatcaa CAACAGG gtcagcagca 87 2.788462 20-1 189 gaaccggtaa AGAAAGG tcgactctat 195 0.725000 21-1 290 cacgctgttg CAGCAGC gagtccagct 296 0.725000 22-1 396 ttaattttcc AAAAAGG ttcctgtgac 402 0.557692 23-1 687 gcattgtcat CAACAGG acatctgtat 693 0.557692 24-1 170 aaagacggct CAAAAGG tctcttcccc 176 1.450000 25-1 713 tggttcttct ATAAAAG tgcaagctct 719 0.390385 26-1 678 TTTCTGCctc CAACGGT tttgaaaaca 684 0.613462 27-1 153 tcatcaaaac AGTGCGG gttacaagaa 159 0.501923 28-1 199 tgattcaaga TGATAGT gaAAACAGGC 205 1.505769 29-1 66 aagacgaatt CAAAATG gatggcatcg 72 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 405 411 408 -w 1.505769 >2 285 291 288 -w 0.892308 >3 341 347 344 -w 1.115385 >4 336 342 339 -w 0.557692 >5 271 277 274 -w 0.669231 >6 786 792 789 -w 1.840385 >7 624 630 627 -w 1.840385 >8 99 105 102 -w 0.501923 >9 186 192 189 -w 0.557692 >10 723 729 726 -w 1.840385 >11 644 650 647 -w 0.780769 >12 550 556 553 -w 0.725000 >13 640 646 643 -w 2.286538 >14 227 233 230 -w 0.613462 >15 616 622 619 -w 0.780769 >16 200 206 203 -w 0.501923 >17 310 316 313 -w 0.780769 >18 44 50 47 -w 0.669231 >19 81 87 84 -w 2.788462 >20 189 195 192 -w 0.725000 >21 290 296 293 -w 0.725000 >22 396 402 399 -w 0.557692 >23 687 693 690 -w 0.557692 >24 170 176 173 -w 1.450000 >25 713 719 716 -w 0.390385 >26 678 684 681 -w 0.613462 >27 153 159 156 -w 0.501923 >28 199 205 202 -w 1.505769 >29 66 72 69 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 44 33 . . 0.3 2 78 . . . 0.8 3 72 . . . 0.7 4 44 39 . . 0.4 5 78 . . . 0.7 6 . . 80 . 1.3 7 . . 55 . 0.5 non- site 31 . 18 . site 50 . 27 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 2 3 . . 3 2 10 . . . 8 3 9 . . . 7 4 2 4 . . 4 5 10 . . . 7 6 . . 17 . 13 7 . . 9 . 5 site 3 . 1 . 3 Weighted motif model: POS A C G T Prob 1 0.416403 0.353251 0.016920 0.213426 0.309120 2 0.781788 0.017586 0.160277 0.040349 0.824968 3 0.811508 0.017586 0.127060 0.043846 0.867721 4 0.433886 0.368985 0.050137 0.146992 0.299191 5 0.832487 0.078775 0.036151 0.052587 0.859787 6 0.058012 0.017586 0.856081 0.068321 1.534422 7 0.112208 0.099754 0.611326 0.176713 0.645751 Conservedness in bits: 5.340958 Conservedness in prob: 9.848758 Concensus sequence: CAACAGG Complete log-likelihood ratio = 162 bits Missing position information = 156 bits Log-likelihood ratio statistic = 5 bits Degrees of freedom = 21 Information per parameter = 0.284 bits MOTIF G 1-1 239 tatacttatt TAGCCATATTT gagagagcct 249 1.505769 2-1 623 ctttcagtaa TTACATATCGG aagcccacaa 633 0.892308 3-1 102 gttcaggcat TTATACTTTGG gtagttcagc 112 1.115385 4-1 724 cttcataaca TTATTTTTCGG ttccacagtg 734 0.557692 5-1 328 ttactggtgc TTCCTCTTTGG gatgataaaa 338 0.669231 6-1 695 CTTTTTActc TTGCCTCTCAG aaactatata 705 1.840385 7-1 68 tattagtatg TTGCTTTTCTG caattgtttc 78 1.840385 8-1 201 tcgctttggc TTGTTCTAAGG ttgttttgaa 211 0.501923 9-1 213 tcttcccata TAATATTACTG cattttctgt 223 0.557692 10-1 174 cacaacagaa TTTCGTTTTGT agtataGTTT 184 1.840385 11-1 754 cgtaagaggc TTATTGCACGT aatccccagt 764 0.780769 12-1 278 gatggatgat TTGCCTTTTTG aagttattta 288 0.725000 13-1 339 aaacacagca TTTCTTTTCGG agagctcgtt 349 2.286538 14-1 76 acgtttattg TTGTCTTTTTG cttgttggaa 86 0.613462 15-1 188 cgcaaaaagc ATACCGCTGGG cgcttatcta 198 0.780769 16-1 597 ggagctataa TTCCATTACGG caaaacagaa 607 0.501923 17-1 225 tttcttttct TTTCCTTTTTT tacaatagct 235 0.780769 18-1 224 gtattaacat TTACTAAAGAT ccaatgatca 234 0.669231 19-1 499 gcttccatat TTACCATGTGG accctttcaa 509 2.788462 20-1 79 ctgttcatta TTGCAATGGGG cgggttcctg 89 0.725000 21-1 713 Ttttgttttg TTTTGGTTTGG tttgatttat 723 0.725000 22-1 689 atctcattag TATCGGTTCTG ccatcccatt 699 0.557692 23-1 325 tgctaacact TTACAGCTTTG aaagtaacag 335 0.557692 24-1 307 ttcacgagcc TTCCCTTTCAG taaaatgaac 317 1.450000 25-1 244 acgccagtat TTTTCCTGCGG atactgtgaa 254 0.390385 26-1 135 tcaggcattc GTACGTTTGGG tagttcagct 145 0.613462 27-1 382 agataattcg TTGCGCATATG ctacaagaac 392 0.501923 28-1 562 TTcacgggat TTTCGTTTAGG tgaaaataaa 572 1.505769 29-1 133 catcatcaac TTATTTATTGT atgaaatcac 143 0.725000 sites: ** * ** ** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 239 249 244 -w 1.505769 >2 623 633 628 -w 0.892308 >3 102 112 107 -w 1.115385 >4 724 734 729 -w 0.557692 >5 328 338 333 -w 0.669231 >6 695 705 700 -w 1.840385 >7 68 78 73 -w 1.840385 >8 201 211 206 -w 0.501923 >9 213 223 218 -w 0.557692 >10 174 184 179 -w 1.840385 >11 754 764 759 -w 0.780769 >12 278 288 283 -w 0.725000 >13 339 349 344 -w 2.286538 >14 76 86 81 -w 0.613462 >15 188 198 193 -w 0.780769 >16 597 607 602 -w 0.501923 >17 225 235 230 -w 0.780769 >18 224 234 229 -w 0.669231 >19 499 509 504 -w 2.788462 >20 79 89 84 -w 0.725000 >21 713 723 718 -w 0.725000 >22 689 699 694 -w 0.557692 >23 325 335 330 -w 0.557692 >24 307 317 312 -w 1.450000 >25 244 254 249 -w 0.390385 >26 135 145 140 -w 0.613462 >27 382 392 387 -w 0.501923 >28 562 572 567 -w 1.505769 >29 133 143 138 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 87 1.0 2 . . . 84 0.9 4 . 64 . . 1.0 7 . . . 69 0.5 8 . . . 66 0.5 10 . . 55 . 0.6 11 . . 74 . 1.2 non- site . . . 30 site . . . 58 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 13 10 2 . . . 12 9 4 . 11 . . 10 7 . . . 8 5 8 . . . 7 5 10 . . 9 . 6 11 . . 15 . 12 site . . . 5 3 Weighted motif model: POS A C G T Prob 1 0.052767 0.017586 0.036151 0.893496 1.086375 2 0.110459 0.017586 0.016920 0.855034 0.970179 4 0.028292 0.739614 0.016920 0.215174 1.162050 7 0.115704 0.141712 0.016920 0.725664 0.605716 8 0.169900 0.017586 0.139298 0.673216 0.488200 10 0.152417 0.017586 0.562375 0.267622 0.623560 11 0.028292 0.017586 0.728459 0.225664 1.172779 Conservedness in bits: 6.108859 Conservedness in prob: 10.849929 Concensus sequence: TTCTTGG Complete log-likelihood ratio = 211 bits Missing position information = 164 bits Log-likelihood ratio statistic = 46 bits Degrees of freedom = 21 Information per parameter = 2.21 bits MOTIF H 1-1 459 gaaacagtat TGAAACA gtattgaaac 465 1.505769 2-1 649 cacaaataac TGCAACA gcgcctacaa 655 0.892308 3-1 763 ggttcaatag TGCAAAA ataggtaact 769 1.115385 4-1 776 accctttgga GGCAACA tagatagata 782 0.557692 5-1 206 ttccgccaga AGAAACG ctatggataa 212 0.669231 6-1 253 aaagaaggct TAAAACA tcacgcgatc 259 1.840385 7-1 590 AACAGCAtga TGCAACA gctcaaaaga 596 1.840385 8-1 655 gaagcaactt TGAAACA caactacgac 661 0.501923 9-1 419 accactgata TGAAACA agtacgatcc 425 0.557692 10-1 281 gaatgccagc TGAAACA cattcttgtt 287 1.840385 11-1 656 AAAGTggcac TGACACA atatttacag 662 0.780769 12-1 335 acattgcact TGCATCA ctgtaggagc 341 0.725000 13-1 408 atagaaaaag TGAAACA gataaaAATT 414 2.286538 14-1 675 agcccagtaa TAAAACA tttacatatg 681 0.613462 15-1 551 ccatgtttgg TGGAACA attgtgaaac 557 0.780769 16-1 417 cattgccaca TAAAACA ggcttgacat 423 0.501923 17-1 628 agtaatgact TAAAACA agcgactatc 634 0.780769 18-1 170 tccaataacg CAAAACG ggctgtggat 176 0.669231 19-1 641 gtctgtaatt TGAAACA aataacgtaa 647 2.788462 20-1 777 ctcatacgta TACAACA catacacaca 783 0.725000 21-1 192 tacacgaagc TGCAACA gccgttcgta 198 0.725000 22-1 336 acgaattggg TGAAAAT gcttggtgct 342 0.557692 23-1 265 cgtataccag TGCTACA aaccctgtta 271 0.557692 24-1 447 aaaacaacac TGAAACA aacttattgc 453 1.450000 25-1 112 ttgcctggtt TGCAACC tacgaaatag 118 0.390385 26-1 535 aggataatgc CGAAACC acacctttAA 541 0.613462 27-1 460 acattacctc TGAAACA aagccgagac 466 0.501923 28-1 447 acggagtacg TGAAAAA cgtccgttat 453 1.505769 29-1 14 gtacaaatca AGAAACA tagtcctgtg 20 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 459 465 462 -w 1.505769 >2 649 655 652 -w 0.892308 >3 763 769 766 -w 1.115385 >4 776 782 779 -w 0.557692 >5 206 212 209 -w 0.669231 >6 253 259 256 -w 1.840385 >7 590 596 593 -w 1.840385 >8 655 661 658 -w 0.501923 >9 419 425 422 -w 0.557692 >10 281 287 284 -w 1.840385 >11 656 662 659 -w 0.780769 >12 335 341 338 -w 0.725000 >13 408 414 411 -w 2.286538 >14 675 681 678 -w 0.613462 >15 551 557 554 -w 0.780769 >16 417 423 420 -w 0.501923 >17 628 634 631 -w 0.780769 >18 170 176 173 -w 0.669231 >19 641 647 644 -w 2.788462 >20 777 783 780 -w 0.725000 >21 192 198 195 -w 0.725000 >22 336 342 339 -w 0.557692 >23 265 271 268 -w 0.557692 >24 447 453 450 -w 1.450000 >25 112 118 115 -w 0.390385 >26 535 541 538 -w 0.613462 >27 460 466 463 -w 0.501923 >28 447 453 450 -w 1.505769 >29 14 20 17 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 78 0.7 2 . . 74 . 1.2 3 62 30 . . 0.6 4 87 . . . 1.0 5 91 . . . 1.1 6 . 83 . . 1.4 7 78 . . . 0.7 non- site 31 . . . site 53 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 7 2 . . 15 . 12 3 6 2 . . 6 4 13 . . . 10 5 14 . . . 11 6 . 18 . . 14 7 10 . . . 7 site 4 . . . 2 Weighted motif model: POS A C G T Prob 1 0.071998 0.057796 0.034403 0.835804 0.862395 2 0.189131 0.017586 0.765172 0.028111 1.266627 3 0.676893 0.253600 0.041396 0.028111 0.670868 4 0.895424 0.042062 0.016920 0.045594 1.088206 5 0.914655 0.017586 0.016920 0.050839 1.170823 6 0.127942 0.827027 0.016920 0.028111 1.413583 7 0.846473 0.049055 0.058878 0.045594 0.901176 Conservedness in bits: 7.373679 Conservedness in prob: 11.214738 Concensus sequence: TGAAACA Complete log-likelihood ratio = 247 bits Missing position information = 188 bits Log-likelihood ratio statistic = 59 bits Degrees of freedom = 21 Information per parameter = 2.85 bits MOTIF I 1-1 360 ttatcttaag GACTTATGT tggtcacatt 368 1.505769 2-1 215 gcaaccacca TTTTTTTTT gctccaaagg 223 0.892308 3-1 643 tgagattttg TCTTTTTTT acctggtatt 651 1.115385 4-1 650 atttggtttt TATTTTTTT aagcaacatc 658 0.557692 5-1 527 tttttaaaac TTTTTTTTT ttgaaagtcc 535 0.669231 6-1 591 ACTTTttttt TTTTTGTTT ctgcattctc 599 1.840385 7-1 689 tcctttccgg TTTTTTTCT caactaccgt 697 1.840385 8-1 448 accatttttg TTCTTATTT actctctaat 456 0.501923 9-1 91 taagtagtat TCTTTATGT gcatttttcc 99 0.557692 10-1 666 gcttcttaag TGTTTTTTT ctttagtctt 674 1.840385 11-1 32 agattattac TTCTTCTTT gttttatgtg 40 0.780769 12-1 373 tcaccttcat TGTTGCTTT atttttccaa 381 0.725000 13-1 595 acaattagat TACTTCTTT ttagttgact 603 2.286538 14-1 293 atagcggttc TATTTCTGT taacaagaag 301 0.613462 15-1 706 caagagagct TCTTTTTTT atgctatcga 714 0.780769 16-1 454 aTTTGATTTa TACTTGTTT cagatccttt 462 0.501923 17-1 358 cctactcttt TGCTTTTTC atatcatgac 366 0.780769 18-1 764 agtatacata TTCTGGTTC aacAACTGTT 772 0.669231 19-1 479 gatgcctcaa TCCTTCTTT tgcttccata 487 2.788462 20-1 452 ttgctctgag TCTTTCTTT acggtgtttg 460 0.725000 21-1 685 aatcggctta GCCTGTTTT tgTTTTTGTT 693 0.725000 22-1 723 ttaggtttat GCCTTTTCT ggttctcaag 731 0.557692 23-1 380 acagggtatt TTTTTTTTC acttctactt 388 0.557692 24-1 344 ttttgccttg TCCTTCTTT gtttcaagcg 352 1.450000 25-1 533 ccaggctttg TGTTAGTAT TTTGTGTTtt 541 0.390385 26-1 666 gtgacaaaat TGTTTCTGC ctcCAACGGT 674 0.613462 27-1 693 cttgcagtac TGCTTGTTT aaatacgcag 701 0.501923 28-1 545 aggcgatata AATTTTTTT cacgggatTT 553 1.505769 29-1 566 agttcccgcc TGCTTATTC tttttccagc 574 0.725000 sites: * *** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 360 368 364 -w 1.505769 >2 215 223 219 -w 0.892308 >3 643 651 647 -w 1.115385 >4 650 658 654 -w 0.557692 >5 527 535 531 -w 0.669231 >6 591 599 595 -w 1.840385 >7 689 697 693 -w 1.840385 >8 448 456 452 -w 0.501923 >9 91 99 95 -w 0.557692 >10 666 674 670 -w 1.840385 >11 32 40 36 -w 0.780769 >12 373 381 377 -w 0.725000 >13 595 603 599 -w 2.286538 >14 293 301 297 -w 0.613462 >15 706 714 710 -w 0.780769 >16 454 462 458 -w 0.501923 >17 358 366 362 -w 0.780769 >18 764 772 768 -w 0.669231 >19 479 487 483 -w 2.788462 >20 452 460 456 -w 0.725000 >21 685 693 689 -w 0.725000 >22 723 731 727 -w 0.557692 >23 380 388 384 -w 0.557692 >24 344 352 348 -w 1.450000 >25 533 541 537 -w 0.390385 >26 666 674 670 -w 0.613462 >27 693 701 697 -w 0.501923 >28 545 553 549 -w 1.505769 >29 566 574 570 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 81 0.8 3 . 43 . 53 0.7 4 . . . 94 1.3 5 . . . 81 0.8 7 . . . 94 1.3 8 . . . 72 0.6 9 . . . 78 0.9 non- site . . . 30 site . . . 83 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 11 8 3 . 5 . 4 7 4 . . . 15 13 5 . . . 11 8 7 . . . 15 13 8 . . . 9 6 9 . . . 10 9 site . . . 12 9 Weighted motif model: POS A C G T Prob 1 0.075494 0.017586 0.104333 0.802587 0.802134 3 0.028292 0.449404 0.016920 0.505384 0.748278 4 0.028292 0.017586 0.016920 0.937202 1.282005 5 0.040529 0.017586 0.083354 0.858531 0.988174 7 0.028292 0.017586 0.016920 0.937202 1.282005 8 0.040529 0.092761 0.120067 0.746643 0.656074 9 0.028292 0.122481 0.016920 0.832307 0.951751 Conservedness in bits: 6.710421 Conservedness in prob: 9.964931 Concensus sequence: TCTTTTT Complete log-likelihood ratio = 243 bits Missing position information = 172 bits Log-likelihood ratio statistic = 70 bits Degrees of freedom = 21 Information per parameter = 3.35 bits MOTIF J 1-1 190 gatttggaga AAAACAG aagcttcagc 196 1.505769 2-1 356 cgtaagtctc AAAAAAA aattgggtta 362 0.892308 3-1 596 acttgtaaat AGAAAAA tgatgttcta 602 1.115385 4-1 345 cAAGAATGca AGAAAAA ttgatgtgat 351 0.557692 5-1 790 aacaaaaaaa AAAAAAA aaaa 796 0.669231 6-1 39 ggtagttgag AAAAAAA ccggaaaGGA 45 1.840385 7-1 145 aaacaaaaaa AAAAAAA gtaaaaattt 151 1.840385 8-1 512 ctcgtatcaa AATAAAA ctagtcagtc 518 0.501923 9-1 39 ataaaagacg AGAAAAA ataaaaacaa 45 0.557692 10-1 345 gatatcgcat AAAAAAA tggccagcta 351 1.840385 11-1 291 gtttccagta AGTAAAA tttgtatgga 297 0.780769 12-1 315 tacaggatga AAAAAAA aagacattgc 321 0.725000 13-1 474 caaaactaat ACAAAAC agcctaaaaa 480 2.286538 14-1 332 gtgataactc AAAAAAC aagagtacaa 338 0.613462 15-1 228 acacgagaaa AGAAACA tgattgactg 234 0.780769 16-1 148 cattctcaca AAAAAAA ctcagaaata 154 0.501923 17-1 788 ctaaaaaaac CAAAAAA tttcag 794 0.780769 18-1 571 cgtctatatt AAAAAAA aggcagcATA 577 0.669231 19-1 31 caacaaggcc AAAACAA ccagcagcaA 37 2.788462 20-1 718 aaaccaaaac AAAACAA aaacaAAAAC 724 0.725000 21-1 786 gtaaaaaggg AAAAAAA gcagatat 792 0.725000 22-1 84 actcctcaac AGAAAAC cgtgctcgcg 90 0.557692 23-1 422 aatttatgat AAAAAAA tcAAGAAAAA 428 0.557692 24-1 254 attcttacgt AAAAAAA tacttacaga 260 1.450000 25-1 657 aaatgcaaaa AAAAAAA tgattcgaat 663 0.390385 26-1 550 CCacaccttt AAAAAAA accaagaacg 556 0.613462 27-1 787 aagccaaacc AAAAAAA ctataca 793 0.501923 28-1 400 ctgattatta AAAACAA acgtaaactc 406 1.505769 29-1 253 AAAAAAAAaa AAAAAAA aaaaaatgtt 259 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 190 196 193 -w 1.505769 >2 356 362 359 -w 0.892308 >3 596 602 599 -w 1.115385 >4 345 351 348 -w 0.557692 >5 790 796 793 -w 0.669231 >6 39 45 42 -w 1.840385 >7 145 151 148 -w 1.840385 >8 512 518 515 -w 0.501923 >9 39 45 42 -w 0.557692 >10 345 351 348 -w 1.840385 >11 291 297 294 -w 0.780769 >12 315 321 318 -w 0.725000 >13 474 480 477 -w 2.286538 >14 332 338 335 -w 0.613462 >15 228 234 231 -w 0.780769 >16 148 154 151 -w 0.501923 >17 788 794 791 -w 0.780769 >18 571 577 574 -w 0.669231 >19 31 37 34 -w 2.788462 >20 718 724 721 -w 0.725000 >21 786 792 789 -w 0.725000 >22 84 90 87 -w 0.557692 >23 422 428 425 -w 0.557692 >24 254 260 257 -w 1.450000 >25 657 663 660 -w 0.390385 >26 550 556 553 -w 0.613462 >27 787 793 790 -w 0.501923 >28 400 406 403 -w 1.505769 >29 253 259 256 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 2 72 . . . 0.7 3 87 . . . 1.0 4 94 . . . 1.3 5 81 . . . 0.9 6 91 . . . 1.1 7 81 . . . 0.8 non- site 31 . . . site 90 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 2 9 . . . 7 3 13 . . . 10 4 15 . . . 13 5 11 . . . 9 6 14 . . . 11 7 11 . . . 8 site 14 . . . 12 Weighted motif model: POS A C G T Prob 1 0.912907 0.042062 0.016920 0.028111 1.168997 2 0.729340 0.089265 0.153284 0.028111 0.656380 3 0.897173 0.017586 0.016920 0.068321 1.102249 4 0.937382 0.017586 0.016920 0.028111 1.274533 5 0.732837 0.222132 0.016920 0.028111 0.794032 6 0.912907 0.042062 0.016920 0.028111 1.168997 7 0.781788 0.125978 0.064123 0.028111 0.765142 Conservedness in bits: 6.930330 Conservedness in prob: 10.016703 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 266 bits Missing position information = 177 bits Log-likelihood ratio statistic = 89 bits Degrees of freedom = 21 Information per parameter = 4.25 bits seed 2 time: 20 seconds (0.33 minutes) MOTIF A 1-1 701 tgtttttaat AATCAGTTTT cattcTACTA 710 1.505769 2-1 248 agatgcctat TTCTATCTTT taatcgtata 257 0.892308 3-1 172 tataaggttg TTTCATATGT gttttatgaa 181 1.115385 4-1 139 atctcaagaa TTGCATTTTG taataacaac 148 0.557692 5-1 512 acaaaaatta TAACATTTTT aaaaCTTTTT 521 0.669231 6-1 102 acctactcgc CTCCTTTTTT tgtgcttctt 111 1.840385 7-1 512 agtgcagtcg CTGCTTTTTT ctcgggctga 521 1.840385 8-1 754 ctattttaat ATTTGTTTTG gcatttgaaa 763 0.501923 9-1 487 TCCTTTTTcg CTGCCTCTTT ttcccatgca 496 0.557692 10-1 515 gcctggctag TTACCTATTT agtgcAAATT 524 1.840385 11-1 393 ccttcagtaa TTTTTTTTTT taatttattt 402 0.780769 12-1 653 aaaataaaac TATCCTTTTT gttcactctg 662 0.725000 13-1 770 cggaaccgct TTCTTTATTT gaattgtctt 779 2.286538 14-1 164 gggcttatac TTTTTTCTTT actactttag 173 0.613462 15-1 26 ttaacattac ATACATATTT agcgcttaac 35 0.780769 16-1 272 agctgttcac TTGTTTTTAT cgtatatcct 281 0.501923 17-1 226 Ttcttttctt TTCCTTTTTT tacaatagct 235 0.780769 18-1 193 ggatagcacc TTACCTATTT ttatcaaaaa 202 0.669231 19-1 491 cttcttttgc TTCCATATTT accatgtgga 500 2.788462 20-1 642 tctGCTTTTT TTCCCTTTTT acgcggaaag 651 0.725000 21-1 697 ctgtttttgt TTTTGTTTTT GTTTTGTTTt 706 0.725000 22-1 217 ttactaaagc ATTCCTCTTT atccaagtcg 226 0.557692 23-1 297 taaattctta TTACTTCTTG cacaaagatg 306 0.557692 24-1 383 tcctctacag TATTATTTTT caacagacgg 392 1.450000 25-1 390 CCAGcaaacg CTGCAGTTTT ttacatcttt 399 0.390385 26-1 213 tataaagttg TTTCATATGT gttttacgaa 222 0.613462 27-1 734 CTTCTTCttc TCTCTTCTTT ccttcctcga 743 0.501923 28-1 271 aactctgtag TTCTGGGATT caaagctgat 280 1.505769 29-1 475 gtcgcttata TTCTCTTTTT tgttttattc 484 0.725000 sites: ** * * *** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 701 710 705 -w 1.505769 >2 248 257 252 -w 0.892308 >3 172 181 176 -w 1.115385 >4 139 148 143 -w 0.557692 >5 512 521 516 -w 0.669231 >6 102 111 106 -w 1.840385 >7 512 521 516 -w 1.840385 >8 754 763 758 -w 0.501923 >9 487 496 491 -w 0.557692 >10 515 524 519 -w 1.840385 >11 393 402 397 -w 0.780769 >12 653 662 657 -w 0.725000 >13 770 779 774 -w 2.286538 >14 164 173 168 -w 0.613462 >15 26 35 30 -w 0.780769 >16 272 281 276 -w 0.501923 >17 226 235 230 -w 0.780769 >18 193 202 197 -w 0.669231 >19 491 500 495 -w 2.788462 >20 642 651 646 -w 0.725000 >21 697 706 701 -w 0.725000 >22 217 226 221 -w 0.557692 >23 297 306 301 -w 0.557692 >24 383 392 387 -w 1.450000 >25 390 399 394 -w 0.390385 >26 213 222 217 -w 0.613462 >27 734 743 738 -w 0.501923 >28 271 280 275 -w 1.505769 >29 475 484 479 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 69 0.5 2 . . . 78 0.7 4 . 61 . . 0.9 6 . . . 84 1.0 8 . . . 91 1.1 9 . . . 84 0.9 10 . . . 84 1.0 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 8 5 2 . . . 10 7 4 . 10 . . 9 6 . . . 12 10 8 . . . 14 11 9 . . . 12 9 10 . . . 12 10 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.133187 0.162691 0.016920 0.687202 0.529460 2 0.164655 0.033320 0.016920 0.785104 0.761055 4 0.028292 0.613740 0.016920 0.341048 0.914086 6 0.028292 0.017586 0.123563 0.830559 0.952168 8 0.075494 0.017586 0.016920 0.889999 1.083744 9 0.044026 0.017586 0.071116 0.867272 1.006592 10 0.028292 0.017586 0.067619 0.886503 1.089532 Conservedness in bits: 6.336636 Conservedness in prob: 10.119878 Concensus sequence: TTCTTTT Complete log-likelihood ratio = 232 bits Missing position information = 174 bits Log-likelihood ratio statistic = 57 bits Degrees of freedom = 21 Information per parameter = 2.74 bits MOTIF B 1-1 310 tcaacgttca CAAATTCGAAA gggaatcatc 320 1.505769 2-1 739 tatttcgagt AAATTTAGAAA cagcaagcct 749 0.892308 3-1 504 ATAAATGTCA AATGTATGACG ttaccacaat 514 1.115385 4-1 473 cgaataaggg CAGAAATTAAT caaatttatc 483 0.557692 5-1 788 CAAAcaaaaa AAAAAAAAAAA aa 798 0.669231 6-1 5 gggc AAAATAAAAAA ggaaaaagag 15 1.840385 7-1 541 agtacggcga AAAGAAGGAAA aaccaaggtc 551 1.840385 8-1 383 actttcattg AAAATTAGACA gtcatgtgat 393 0.501923 9-1 69 caccagaacc AAAAATCAAAA ttaagtagta 79 0.557692 10-1 530 TATTTagtgc AAATTGGGAAG agatctattg 540 1.840385 11-1 550 TTTGTGttcg AAAAAGGGAAG attgctccaa 560 0.780769 12-1 306 ttaacccatt ACAGGATGAAA AAAAAAAgac 316 0.725000 13-1 639 tgccattcat AAAATAGGAAA agataacagg 649 2.286538 14-1 718 tataacatgt AAAGCAAAAAA ctagaacact 728 0.613462 15-1 622 aaagaaactg AAAATGTAAAA ctccagtaaa 632 0.780769 16-1 125 aatttgaagc AAAAAGGAAAA tccattctca 135 0.501923 17-1 783 AAAAgctaaa AAAACCAAAAA atttcag 793 0.780769 18-1 1 AAAAGCACTAA gaTTTTTGAT 11 0.669231 19-1 293 actccaatgg ACAGCACGAAT ccttcaattt 303 2.788462 20-1 706 ataaatcaaa CCAAACCAAAA caaaacaAAA 716 0.725000 21-1 789 AAAAGGGAAa AAAAGCAGATA t 799 0.725000 22-1 300 ctccaattgg AAATAAGGTAA taatgacttt 310 0.557692 23-1 497 taacctaact ATGAACAGATG gtaggctcta 507 0.557692 24-1 9 agacgagc AACTCCAGAGA aaaagccaaa 19 1.450000 25-1 323 gatatttggc AAATTTGGACT aaaggGTTTT 333 0.390385 26-1 485 gaagcgttta AAATAGAGAAT caggatgaat 495 0.613462 27-1 645 tcggtactcc AAAGGATCAAA acacttacat 655 0.501923 28-1 525 cctacataca AAAGAGCGAAA ggcgatataA 535 1.505769 29-1 8 agtgtac AAATCAAGAAA catagtcctg 18 0.725000 sites: *** **** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 310 320 315 -w 1.505769 >2 739 749 744 -w 0.892308 >3 504 514 509 -w 1.115385 >4 473 483 478 -w 0.557692 >5 788 798 793 -w 0.669231 >6 5 15 10 -w 1.840385 >7 541 551 546 -w 1.840385 >8 383 393 388 -w 0.501923 >9 69 79 74 -w 0.557692 >10 530 540 535 -w 1.840385 >11 550 560 555 -w 0.780769 >12 306 316 311 -w 0.725000 >13 639 649 644 -w 2.286538 >14 718 728 723 -w 0.613462 >15 622 632 627 -w 0.780769 >16 125 135 130 -w 0.501923 >17 783 793 788 -w 0.780769 >18 1 11 6 -w 0.669231 >19 293 303 298 -w 2.788462 >20 706 716 711 -w 0.725000 >21 789 799 794 -w 0.725000 >22 300 310 305 -w 0.557692 >23 497 507 502 -w 0.557692 >24 9 19 14 -w 1.450000 >25 323 333 328 -w 0.390385 >26 485 495 490 -w 0.613462 >27 645 655 650 -w 0.501923 >28 525 535 530 -w 1.505769 >29 8 18 13 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 84 . . . 1.0 2 81 . . . 0.8 3 81 . . . 0.8 8 . . 58 . 0.7 9 87 . . . 1.0 10 75 . . . 0.6 11 69 . . . 0.5 non- site 31 . . . site 76 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 12 . . . 10 2 11 . . . 8 3 11 . . . 8 8 . . 10 . 7 9 13 . . . 10 10 9 . . . 6 11 8 . . . 5 site 10 . . . 7 Weighted motif model: POS A C G T Prob 1 0.849970 0.104999 0.016920 0.028111 0.983716 2 0.787033 0.150453 0.016920 0.045594 0.814471 3 0.821998 0.063041 0.051885 0.063076 0.809578 8 0.231089 0.054299 0.669018 0.045594 0.910196 9 0.898921 0.017586 0.016920 0.066573 1.108763 10 0.788781 0.080523 0.062375 0.068321 0.709330 11 0.666403 0.017586 0.151535 0.164475 0.476476 Conservedness in bits: 5.812531 Conservedness in prob: 10.005747 Concensus sequence: AAAGAAA Complete log-likelihood ratio = 197 bits Missing position information = 165 bits Log-likelihood ratio statistic = 31 bits Degrees of freedom = 21 Information per parameter = 1.48 bits MOTIF C 1-1 402 tacctcttgc CAGCAACAG gccagttata 410 1.505769 2-1 141 tatcgcgttc GCGTCACAG tgaagtcagg 149 0.892308 3-1 762 cggttcaata GTGCAAAAA taggtaacta 770 1.115385 4-1 399 atttcctctg CAGCAACAA gttTCCTTGA 407 0.557692 5-1 279 TACAAcagaa CAAGACAAG ctgtcattac 287 0.669231 6-1 460 gggcagttta CTTTCACAT actcttttat 468 1.840385 7-1 199 tgaaacagat CTAAAACTC aagagcttat 207 1.840385 8-1 80 ctgttattaa CTTCTACAT ccatctgatc 88 0.501923 9-1 322 catggaaaag CTCTCCAAC gaccttgaaa 330 0.557692 10-1 319 ggcattccag CTGTAAAAA accagcagat 327 1.840385 11-1 655 AAAAGTGGCA CTGACACAA tatttacagg 663 0.780769 12-1 336 cattgcactt GCATCACTG taggagcgac 344 0.725000 13-1 39 acgttttgtt CGAGAATAG caagcaagtt 47 2.286538 14-1 11 gcagaagtat CACTAACAG agtgcggtat 19 0.613462 15-1 116 cccagtcgta CAAAAGCAC ctctgcatac 124 0.780769 16-1 172 atacacgcac CAGTCAAAA aagacaagtt 180 0.501923 17-1 126 caagtcggtt CAGGCCCAC aagAAACAAA 134 0.780769 18-1 435 ttagggctct CAAAAATAG tgagagaaat 443 0.669231 19-1 51 gcagcaatac CAGCAACAA ggccaaaact 59 2.788462 20-1 132 agatttccct ACGTACCAG tcgccacgga 140 0.725000 21-1 244 cccgactgcg CAGCCCAAC gtgcgcgtaa 252 0.725000 22-1 546 aaggaacgcg CGCGCACAG aacttgcgga 554 0.557692 23-1 684 aaggcattgt CATCAACAG gacatctgta 692 0.557692 24-1 263 tAAAAAAAta CTTACAGAG acgttaaagc 271 1.450000 25-1 375 CTTTTTAggg CAGTACCAG caaacgCTGC 383 0.390385 26-1 126 actaattgtt CAGGCATTC gtacgtttgg 134 0.613462 27-1 36 agaaggtacg CTATAAAAG aatcaactga 44 0.501923 28-1 34 ggtaaaatga CGTCCAAAA ctgccagtat 42 1.505769 29-1 233 ctcggtaaaa CCGGCCAAA aaaaaaAAAA 241 0.725000 sites: * * ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 402 410 406 -w 1.505769 >2 141 149 145 -w 0.892308 >3 762 770 766 -w 1.115385 >4 399 407 403 -w 0.557692 >5 279 287 283 -w 0.669231 >6 460 468 464 -w 1.840385 >7 199 207 203 -w 1.840385 >8 80 88 84 -w 0.501923 >9 322 330 326 -w 0.557692 >10 319 327 323 -w 1.840385 >11 655 663 659 -w 0.780769 >12 336 344 340 -w 0.725000 >13 39 47 43 -w 2.286538 >14 11 19 15 -w 0.613462 >15 116 124 120 -w 0.780769 >16 172 180 176 -w 0.501923 >17 126 134 130 -w 0.780769 >18 435 443 439 -w 0.669231 >19 51 59 55 -w 2.788462 >20 132 140 136 -w 0.725000 >21 244 252 248 -w 0.725000 >22 546 554 550 -w 0.557692 >23 684 692 688 -w 0.557692 >24 263 271 267 -w 1.450000 >25 375 383 379 -w 0.390385 >26 126 134 130 -w 0.613462 >27 36 44 40 -w 0.501923 >28 34 42 38 -w 1.505769 >29 233 241 237 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 80 . . 1.3 3 . . 46 . 0.3 5 50 43 . . 0.6 6 69 24 . . 0.7 7 . 52 . . 0.5 8 84 . . . 0.9 9 . . 42 . 0.3 non- site 31 19 . . site 42 34 . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 16 . . 13 3 . . 6 . 3 5 3 5 . . 6 6 8 1 . . 7 7 . 7 . . 5 8 12 . . . 9 9 . . 5 . 3 site 2 3 . . 3 Weighted motif model: POS A C G T Prob 1 0.051019 0.818286 0.102584 0.028111 1.384062 3 0.262557 0.071782 0.453983 0.211678 0.301205 5 0.556264 0.382971 0.016920 0.043846 0.661329 6 0.769550 0.160943 0.041396 0.028111 0.775404 7 0.283536 0.514090 0.062375 0.139999 0.428384 8 0.837732 0.017586 0.016920 0.127762 0.914503 9 0.335984 0.183670 0.378808 0.101538 0.248619 Conservedness in bits: 4.713506 Conservedness in prob: 9.522401 Concensus sequence: CGCACAG Complete log-likelihood ratio = 167 bits Missing position information = 149 bits Log-likelihood ratio statistic = 17 bits Degrees of freedom = 21 Information per parameter = 0.849 bits MOTIF D 1-1 189 ggatttggag AAAAACAGAA gcttcagcat 198 1.505769 2-1 308 ttgagtacgg ATTACTGTAA ttgctcgtgt 317 0.892308 3-1 494 tcttcccctg ATAAATGTCA AATGTATGAC 503 1.115385 4-1 36 cttccgtttc AAAAATGAAT ataatcgtac 45 0.557692 5-1 642 acgaaccaag AAAATGAAAA caatatatag 651 0.669231 6-1 786 gcagagaaaa AGAAAGGAAA ataat 795 1.840385 7-1 148 cAAAAAAAaa AAAAGTAAAA atttcgagta 157 1.840385 8-1 250 taatagggaa CTCATAGTAA gccatgcagc 259 0.501923 9-1 733 gaaaactgga AAAAGGGAAG gggctatctc 742 0.557692 10-1 109 gttattcatt ACAACGAGAA tatttaggaa 118 1.840385 11-1 645 gaattgtttc AAAAGTGGCA CTGACACAAt 654 0.780769 12-1 550 gaaaatacct AAAAAGGAAA taggcaataa 559 0.725000 13-1 397 ttttcgtctc AATAGAAAAA gtgaaacaga 406 2.286538 14-1 347 Acaagagtac AATATGAAAA tcttttgcct 356 0.613462 15-1 164 ccattgtctc AAAATAGCAA aaaacgcaaa 173 0.780769 16-1 58 cagcaaattg AAAACGATAA agaactagcc 67 0.501923 17-1 767 ggcgagcatt AACAATAAAA gctaaaAAAA 776 0.780769 18-1 61 tcttgcaccc ATAATAGAAA attatggaac 70 0.669231 19-1 340 caacagaaca ATAACGGCAA ccagaaccgc 349 2.788462 20-1 724 AAAcaaaaca AAAACAAAAA caaaaacagg 733 0.725000 21-1 778 ctttccgcgt AAAAAGGGAA aAAAAGCAGA 787 0.725000 22-1 380 TTTTTTcggt AATAGTTTAA ttttccaaaa 389 0.557692 23-1 250 catgatatgg AAAAACGTAT accagtgcta 259 0.557692 24-1 98 aCCTTTGTgg AAAATGACAA gattatcaat 107 1.450000 25-1 715 gttcttctat AAAAGTGCAA gctctataaa 724 0.390385 26-1 623 agactacaat AATACAGCAA ggatggggta 632 0.613462 27-1 363 gtacatatac ATAAGTAGAA gataattcgt 372 0.501923 28-1 164 aaaatccctt AATAAAATAA tcgggcctta 173 1.505769 29-1 248 CAAAaaaaaa AAAAAAAAAA AAAAAAAatg 257 0.725000 sites: **** * ** 5 10 (29 sites in 29 sequences) Conservedness in sites: >1 189 198 193 -w 1.505769 >2 308 317 312 -w 0.892308 >3 494 503 498 -w 1.115385 >4 36 45 40 -w 0.557692 >5 642 651 646 -w 0.669231 >6 786 795 790 -w 1.840385 >7 148 157 152 -w 1.840385 >8 250 259 254 -w 0.501923 >9 733 742 737 -w 0.557692 >10 109 118 113 -w 1.840385 >11 645 654 649 -w 0.780769 >12 550 559 554 -w 0.725000 >13 397 406 401 -w 2.286538 >14 347 356 351 -w 0.613462 >15 164 173 168 -w 0.780769 >16 58 67 62 -w 0.501923 >17 767 776 771 -w 0.780769 >18 61 70 65 -w 0.669231 >19 340 349 344 -w 2.788462 >20 724 733 728 -w 0.725000 >21 778 787 782 -w 0.725000 >22 380 389 384 -w 0.557692 >23 250 259 254 -w 0.557692 >24 98 107 102 -w 1.450000 >25 715 724 719 -w 0.390385 >26 623 632 627 -w 0.613462 >27 363 372 367 -w 0.501923 >28 164 173 168 -w 1.505769 >29 248 257 252 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 91 . . . 1.1 2 69 . . . 0.5 3 69 . . . 0.5 4 94 . . . 1.3 7 44 . 49 . 0.7 9 87 . . . 1.0 10 84 . . . 0.9 non- site 31 . . . site 81 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 14 . . . 11 2 8 . . . 5 3 8 . . . 5 4 15 . . . 13 7 2 . 7 . 7 9 13 . . . 10 10 12 . . . 9 site 11 . . . 8 Weighted motif model: POS A C G T Prob 1 0.921648 0.033320 0.016920 0.028111 1.203284 2 0.619201 0.075279 0.074612 0.230908 0.316391 3 0.694375 0.057796 0.016920 0.230908 0.547421 4 0.937382 0.017586 0.016920 0.028111 1.274533 7 0.496823 0.017586 0.439997 0.045594 0.694677 9 0.877942 0.077027 0.016920 0.028111 1.055508 10 0.884935 0.017586 0.034403 0.063076 1.044919 Conservedness in bits: 6.136732 Conservedness in prob: 9.552685 Concensus sequence: AAAAGAA Complete log-likelihood ratio = 225 bits Missing position information = 168 bits Log-likelihood ratio statistic = 57 bits Degrees of freedom = 21 Information per parameter = 2.75 bits MOTIF E 1-1 543 aaatcccgtg AAAAAAA tttatatcgc 549 1.505769 2-1 53 TTTGATtatg AAAGCAA cccggaaggt 59 0.892308 3-1 683 ttacggatgc AAGAAAA ggagaagggc 689 1.115385 4-1 706 acatactgct CAAAAAA tcttcataac 712 0.557692 5-1 775 acaaacaaac AAACAAA caaaaaAAAA 781 0.669231 6-1 39 ggtagttgag AAAAAAA ccggaaagga 45 1.840385 7-1 139 atgcagaaac AAAAAAA aaAAAAGTAA 145 1.840385 8-1 511 gctcgtatca AAATAAA actagtcagt 517 0.501923 9-1 49 agaaaaaata AAAACAA cggcaccaga 55 0.557692 10-1 200 AGTTTATTAg AAACAAA tgtgaataga 206 1.840385 11-1 794 ccgcaaatcg AAGACAA 800 0.780769 12-1 317 CAGGATGAAA AAAAAAA gacattgcac 323 0.725000 13-1 368 tttcaaaatg AAACAAA cgccgttgtc 374 2.286538 14-1 331 agtgataact CAAAAAA caagagtacA 337 0.613462 15-1 325 attaatattc CAGAAAA agaaatTCCT 331 0.780769 16-1 148 cattctcaca AAAAAAA ctcagaaata 154 0.501923 17-1 138 GGCCCACaag AAACAAA cgaatctttg 144 0.780769 18-1 572 gtctatatta AAAAAAA ggcagcataa 578 0.669231 19-1 616 tgcgatgatg AAACAAA catgaaacgt 622 2.788462 20-1 187 gggaaccggt AAAGAAA ggtcgactct 193 0.725000 21-1 755 ttaaatcttc GAGGAAA tttgcgcttt 761 0.725000 22-1 141 aggaacataa AAATAAA tatctcgcgc 147 0.557692 23-1 422 aatttatgat AAAAAAA tcaagaaaaa 428 0.557692 24-1 254 ATtcttacgt AAAAAAA taCTTACAGA 260 1.450000 25-1 676 attcgaatgt AAACAAA aaaaactgtc 682 0.390385 26-1 551 cacaccttta AAAAAAA ccaagaacgt 557 0.613462 27-1 787 aagccaaacc AAAAAAA ctataca 793 0.501923 28-1 369 gcaattgcgc AAGAAAA tagtagaatg 375 1.505769 29-1 258 AAAAAAAAAA AAAAAAA atgttctcaa 264 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 543 549 546 -w 1.505769 >2 53 59 56 -w 0.892308 >3 683 689 686 -w 1.115385 >4 706 712 709 -w 0.557692 >5 775 781 778 -w 0.669231 >6 39 45 42 -w 1.840385 >7 139 145 142 -w 1.840385 >8 511 517 514 -w 0.501923 >9 49 55 52 -w 0.557692 >10 200 206 203 -w 1.840385 >11 794 800 797 -w 0.780769 >12 317 323 320 -w 0.725000 >13 368 374 371 -w 2.286538 >14 331 337 334 -w 0.613462 >15 325 331 328 -w 0.780769 >16 148 154 151 -w 0.501923 >17 138 144 141 -w 0.780769 >18 572 578 575 -w 0.669231 >19 616 622 619 -w 2.788462 >20 187 193 190 -w 0.725000 >21 755 761 758 -w 0.725000 >22 141 147 144 -w 0.557692 >23 422 428 425 -w 0.557692 >24 254 260 257 -w 1.450000 >25 676 682 679 -w 0.390385 >26 551 557 554 -w 0.613462 >27 787 793 790 -w 0.501923 >28 369 375 372 -w 1.505769 >29 258 264 261 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 81 . . . 0.8 2 94 . . . 1.3 3 78 . . . 0.9 4 59 . . . 0.3 5 84 . . . 1.0 6 94 . . . 1.3 7 94 . . . 1.3 non- site 31 . . . site 88 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 11 . . . 8 2 15 . . . 13 3 10 . . . 9 4 6 . . . 3 5 12 . . . 10 6 15 . . . 13 7 15 . . . 13 site 13 . . . 11 Weighted motif model: POS A C G T Prob 1 0.853466 0.078775 0.039647 0.028111 0.954383 2 0.937382 0.017586 0.016920 0.028111 1.274533 3 0.783536 0.017586 0.170766 0.028111 0.864470 4 0.556264 0.292062 0.090347 0.061328 0.402324 5 0.867452 0.087516 0.016920 0.028111 1.026955 6 0.937382 0.017586 0.016920 0.028111 1.274533 7 0.937382 0.017586 0.016920 0.028111 1.274533 Conservedness in bits: 7.071730 Conservedness in prob: 9.876683 Concensus sequence: AAAAAAA Complete log-likelihood ratio = 260 bits Missing position information = 181 bits Log-likelihood ratio statistic = 78 bits Degrees of freedom = 21 Information per parameter = 3.73 bits MOTIF F 1-1 331 gggaatcatc CTAACCAA atatttcggg 338 1.505769 2-1 222 ccattttttt TTGCTCCA aaggcgggag 229 0.892308 3-1 348 TTAaaacagg ATGCTAAA gccgacaccg 355 1.115385 4-1 312 aacgcgctaa TTGCATCA gcctatcttt 319 0.557692 5-1 266 ttactctatc TTGTACAA cagaaCAAGA 273 0.669231 6-1 483 ttttatcttt CTGAAGTA aaatgtgatg 490 1.840385 7-1 52 gtaaaaagtt ATGATATA ttagtatgtt 59 1.840385 8-1 56 gcacgttctg AGGCATCG cctatgctgt 63 0.501923 9-1 543 ttttgattat ATGCTCGA cataccccag 550 0.557692 10-1 738 gtaagacccg GTGCTAAA caacctgatc 745 1.840385 11-1 439 gatcctttcc ATTATGCA gccataagag 446 0.780769 12-1 38 gaaagttaca AAGTAGCG agtttgtcgt 45 0.725000 13-1 719 gatattgata TTTCTCAA acaagactcg 726 2.286538 14-1 640 cagcacatta TTGAAAAA tgttttaaaa 647 0.613462 15-1 561 tggaacaatt GTGAAACG tgatcaattc 568 0.780769 16-1 37 aatttgctac TTGAAGAA attcagcaaa 44 0.501923 17-1 509 tgtcacatat CTTCTCAA attttaggtt 516 0.780769 18-1 88 aacaatagac CTGTTCAA atttttgata 95 0.669231 19-1 734 aaatatttgg ATACGACA tcctttatct 741 2.788462 20-1 41 cGGCATCACc CTGCTTGG cgtatggggc 48 0.725000 21-1 319 cgcgattggg CTGCTAAG gtcgactgcc 326 0.725000 22-1 775 tTGATTCTTT TTGGTAAG atctcgcctg 782 0.557692 23-1 448 aaacctgatt ATGCTAAG aaagtagagg 455 0.557692 24-1 468 tattgcactc CTGCATCG catacagatc 475 1.450000 25-1 649 atttaactaa ATGCAAAA aaaaaaatga 656 0.390385 26-1 277 tcattctgag ATACAACG aagtgTAGTT 284 0.613462 27-1 285 tctgcttcgc CTACCGCA atgacgttcg 292 0.501923 28-1 478 aaccctttat ATGCACAA ccttcacaca 485 1.505769 29-1 334 gtttcgtttg TTGCTTAA agggtggatc 341 0.725000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 331 338 334 -w 1.505769 >2 222 229 225 -w 0.892308 >3 348 355 351 -w 1.115385 >4 312 319 315 -w 0.557692 >5 266 273 269 -w 0.669231 >6 483 490 486 -w 1.840385 >7 52 59 55 -w 1.840385 >8 56 63 59 -w 0.501923 >9 543 550 546 -w 0.557692 >10 738 745 741 -w 1.840385 >11 439 446 442 -w 0.780769 >12 38 45 41 -w 0.725000 >13 719 726 722 -w 2.286538 >14 640 647 643 -w 0.613462 >15 561 568 564 -w 0.780769 >16 37 44 40 -w 0.501923 >17 509 516 512 -w 0.780769 >18 88 95 91 -w 0.669231 >19 734 741 737 -w 2.788462 >20 41 48 44 -w 0.725000 >21 319 326 322 -w 0.725000 >22 775 782 778 -w 0.557692 >23 448 455 451 -w 0.557692 >24 468 475 471 -w 1.450000 >25 649 656 652 -w 0.390385 >26 277 284 280 -w 0.613462 >27 285 292 288 -w 0.501923 >28 478 485 481 -w 1.505769 >29 334 341 337 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 37 27 . . 0.1 2 . . . 87 1.0 3 . . 71 . 1.0 4 . 58 . . 0.6 5 40 . . 47 0.2 7 50 33 . . 0.3 8 66 . 30 . 0.8 non- site 31 . . . site 34 . . . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 1 1 . . 1 2 . . . 13 10 3 . . 14 . 10 4 . 9 . . 6 5 2 . . 3 2 7 3 3 . . 3 8 7 . 2 . 8 site 1 . . . 0 Weighted motif model: POS A C G T Prob 1 0.384935 0.274579 0.099088 0.241398 0.080460 2 0.051019 0.017586 0.032654 0.898741 1.107462 3 0.197872 0.017586 0.635801 0.148741 0.779696 4 0.274795 0.598006 0.034403 0.092797 0.679414 5 0.346473 0.080523 0.104333 0.468671 0.145882 7 0.481089 0.318286 0.057130 0.143496 0.274691 8 0.729340 0.017586 0.224962 0.028111 0.799581 Conservedness in bits: 3.867187 Conservedness in prob: 7.992089 Concensus sequence: CTGCTCA Complete log-likelihood ratio = 141 bits Missing position information = 120 bits Log-likelihood ratio statistic = 20 bits Degrees of freedom = 21 Information per parameter = 0.988 bits MOTIF G 1-1 231 aaccaaagta TACTTATTT agccatattt 239 1.505769 2-1 389 ataatactcc TGGTTCTTT ctcatgaacc 397 0.892308 3-1 643 tgagattttg TCTTTTTTT acctggtatt 651 1.115385 4-1 411 GCAACAAgtt TCCTTGATT ataaaggtct 419 0.557692 5-1 526 ATTTTTaaaa CTTTTTTTT tttgaaagtc 534 0.669231 6-1 185 ccttggtttt TCCTTCTTT tcgccgtact 193 1.840385 7-1 455 actactcggg TCTTTATAT ggatcgcgtg 463 1.840385 8-1 572 ctttactgta TTATTTTTT gatatccaca 580 0.501923 9-1 614 cctttcaaca AGTTTATTG ggcccgactt 622 0.557692 10-1 190 tttgtagtat AGTTTATTA gAAACAAAtg 198 1.840385 11-1 32 agattattac TTCTTCTTT gttttatgtg 40 0.780769 12-1 496 tttgcatatc TTTTTTTTT cagcgatgca 504 0.725000 13-1 595 acaattagat TACTTCTTT ttagttgaCT 603 2.286538 14-1 81 tattgttgtc TTTTTGCTT gttggaatta 89 0.613462 15-1 338 AAAAagaaat TCCTTCTTT gggtgttgtg 346 0.780769 16-1 454 ATTTGATtta TACTTGTTT cagatCCTTT 462 0.501923 17-1 208 atatgtaaca TTTTTCTTT tcttttcttT 216 0.780769 18-1 678 cactagcggg TTGTTTTAT cataattgtt 686 0.669231 19-1 402 tttgtttacg TATTTGTTT atatatataa 410 2.788462 20-1 452 ttgctctgag TCTTTCTTT acggtgtttg 460 0.725000 21-1 707 TTTTGTTTTT GTTTTGTTT tggtttggtt 715 0.725000 22-1 766 tacccatcgt TGATTCTTT TTGGTAAGat 774 0.557692 23-1 379 aacagggtat TTTTTTTTT cacttctact 387 0.557692 24-1 344 ttttgccttg TCCTTCTTT gtttcaagcg 352 1.450000 25-1 363 ctgggtataa CCCTTTTTA gggCAGTACC 371 0.390385 26-1 290 CAACGaagtg TAGTTGTTT gagtacgtta 298 0.613462 27-1 319 caccagaaca CCCTTTTTA tagccactat 327 0.501923 28-1 333 tttactccta TGCTGTTTA caaggtctat 341 1.505769 29-1 601 ctactttata TACCCTTTT cgtggTCCTT 609 0.725000 sites: * *** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 231 239 235 -w 1.505769 >2 389 397 393 -w 0.892308 >3 643 651 647 -w 1.115385 >4 411 419 415 -w 0.557692 >5 526 534 530 -w 0.669231 >6 185 193 189 -w 1.840385 >7 455 463 459 -w 1.840385 >8 572 580 576 -w 0.501923 >9 614 622 618 -w 0.557692 >10 190 198 194 -w 1.840385 >11 32 40 36 -w 0.780769 >12 496 504 500 -w 0.725000 >13 595 603 599 -w 2.286538 >14 81 89 85 -w 0.613462 >15 338 346 342 -w 0.780769 >16 454 462 458 -w 0.501923 >17 208 216 212 -w 0.780769 >18 678 686 682 -w 0.669231 >19 402 410 406 -w 2.788462 >20 452 460 456 -w 0.725000 >21 707 715 711 -w 0.725000 >22 766 774 770 -w 0.557692 >23 379 387 383 -w 0.557692 >24 344 352 348 -w 1.450000 >25 363 371 367 -w 0.390385 >26 290 298 294 -w 0.613462 >27 319 327 323 -w 0.501923 >28 333 341 337 -w 1.505769 >29 601 609 605 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 75 0.6 3 . 39 . 40 0.3 4 . . . 91 1.2 5 . . . 87 1.0 7 . . . 87 1.0 8 . . . 87 1.0 9 . . . 78 0.7 non- site . . . 30 site . . . 82 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 6 3 . 4 . 2 3 4 . . . 14 12 5 . . . 13 10 7 . . . 13 10 8 . . . 13 10 9 . . . 10 7 site . . . 12 9 Weighted motif model: POS A C G T Prob 1 0.103466 0.066537 0.039647 0.790349 0.714726 3 0.061508 0.419684 0.085102 0.433706 0.440665 4 0.028292 0.040313 0.016920 0.914475 1.182884 5 0.028292 0.040313 0.064123 0.867272 1.002691 7 0.045774 0.036817 0.016920 0.900489 1.115371 8 0.106963 0.017586 0.016920 0.858531 0.980626 9 0.161159 0.017586 0.034403 0.786853 0.762603 Conservedness in bits: 6.199566 Conservedness in prob: 9.886028 Concensus sequence: TCTTTTT Complete log-likelihood ratio = 216 bits Missing position information = 182 bits Log-likelihood ratio statistic = 33 bits Degrees of freedom = 21 Information per parameter = 1.61 bits MOTIF H 1-1 160 gtttccgaga CTTCTAT cgcatgttgt 166 1.505769 2-1 437 ggtttgtgcc GTTCTGC acgttttcgt 443 0.892308 3-1 334 acagggcttt CTTTTTA aaacaggATG 340 1.115385 4-1 550 gatattgagg CTTTTGT acaatttata 556 0.557692 5-1 365 ccctgcattg CCTCTTT atttgacgtt 371 0.669231 6-1 582 gaaattttta CTTTTTT tttttttgtt 588 1.840385 7-1 718 acTCTTTTTC CTTTTTT attttgccct 724 1.840385 8-1 12 tctgtatagt CTTCTTC cattctctta 18 0.501923 9-1 510 ccatgcattt CCTTTTT gagtagtacg 516 0.557692 10-1 398 tttatagcgt CTTTTGA tgacgcgaaa 404 1.840385 11-1 686 ttgatagctt CTTGTTT taacaatacg 692 0.780769 12-1 281 ggatgatttg CCTTTTT gaagttattt 287 0.725000 13-1 612 TTttagttga CTTTTTT gagacgttcg 618 2.286538 14-1 186 tactttagat CTTTTTA gatccttttg 192 0.613462 15-1 704 ctcaagagag CTTCTTT ttttatgcta 710 0.780769 16-1 468 TGTTTcagat CCTTTGT cgggccggat 474 0.501923 17-1 359 ctactctttt GCTTTTT catatcatga 365 0.780769 18-1 335 tttatactgt CTTTTGC acttcaagga 341 0.669231 19-1 757 tatctttttt CCTTTAA gagcaggata 763 2.788462 20-1 635 acatatatct GCTTTTT TTCCCTTTTT 641 0.725000 21-1 572 gggccacgtc CTTTTGG aacccgtcca 578 0.725000 22-1 369 tgtgttgtgg CTTTTTT cggtAATAGT 375 0.557692 23-1 777 AGCAGacact CCTTTTT ttcttcatac 783 0.557692 24-1 89 aacgaactga CCTTTGT ggAAAATGAC 95 1.450000 25-1 339 GGACTaaagg GTTTTTA tcgaggactg 345 0.390385 26-1 43 gattcgcggg CTGTTAC ttatcctata 49 0.613462 27-1 724 tacatttctt CTTCTTC ttcTCTCTTC 730 0.501923 28-1 297 tgataccatc CTTTTAT tctctacacc 303 1.505769 29-1 642 cccctcttcg CTTTTTA tcgaaaattt 648 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 160 166 163 -w 1.505769 >2 437 443 440 -w 0.892308 >3 334 340 337 -w 1.115385 >4 550 556 553 -w 0.557692 >5 365 371 368 -w 0.669231 >6 582 588 585 -w 1.840385 >7 718 724 721 -w 1.840385 >8 12 18 15 -w 0.501923 >9 510 516 513 -w 0.557692 >10 398 404 401 -w 1.840385 >11 686 692 689 -w 0.780769 >12 281 287 284 -w 0.725000 >13 612 618 615 -w 2.286538 >14 186 192 189 -w 0.613462 >15 704 710 707 -w 0.780769 >16 468 474 471 -w 0.501923 >17 359 365 362 -w 0.780769 >18 335 341 338 -w 0.669231 >19 757 763 760 -w 2.788462 >20 635 641 638 -w 0.725000 >21 572 578 575 -w 0.725000 >22 369 375 372 -w 0.557692 >23 777 783 780 -w 0.557692 >24 89 95 92 -w 1.450000 >25 339 345 342 -w 0.390385 >26 43 49 46 -w 0.613462 >27 724 730 727 -w 0.501923 >28 297 303 300 -w 1.505769 >29 642 648 645 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . 80 . . 1.4 2 . 30 . 66 0.7 3 . . . 91 1.2 4 . . . 72 0.7 5 . . . 94 1.3 6 . . 24 59 0.4 7 . . . 56 0.2 non- site . . . 30 site . . . 66 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . 16 . . 14 2 . 2 . 7 7 3 . . . 14 12 4 . . . 9 7 5 . . . 15 13 6 . . 1 6 4 7 . . . 5 2 site . . . 7 5 Weighted motif model: POS A C G T Prob 1 0.028292 0.839265 0.104333 0.028111 1.494628 2 0.028292 0.292062 0.016920 0.662727 0.746014 3 0.028292 0.017586 0.036151 0.917971 1.196852 4 0.028292 0.169684 0.041396 0.760629 0.767973 5 0.028292 0.017586 0.016920 0.937202 1.282005 6 0.229340 0.017586 0.224962 0.528111 0.307480 7 0.262557 0.117237 0.039647 0.580559 0.290058 Conservedness in bits: 6.085010 Conservedness in prob: 9.365960 Concensus sequence: CTTTTTT Complete log-likelihood ratio = 223 bits Missing position information = 170 bits Log-likelihood ratio statistic = 53 bits Degrees of freedom = 21 Information per parameter = 2.53 bits MOTIF I 1-1 716 GTTTTcattc TACTATTT tcttgcgcaa 723 1.505769 2-1 41 tcctaaactt TGTTTGAT tatgAAAGCA 48 0.892308 3-1 150 tgtctcatgt TGTTCGTT ttgttataag 157 1.115385 4-1 725 ttcataacat TATTTTTC ggttccacag 732 0.557692 5-1 714 gtctgttaaa TGTTTTTT atctcaggtt 721 0.669231 6-1 165 atttagaggt TATTTTTT gaccttggtt 172 1.840385 7-1 710 actaccgtac TCTTTTTC CTTTTTTatt 717 1.840385 8-1 442 ttgtttacca TTTTTGTT cttatttact 449 0.501923 9-1 477 cactcacttt TCCTTTTT cgCTGCCTCT 484 0.557692 10-1 666 gcttcttaag TGTTTTTT tctttagtct 673 1.840385 11-1 538 caaattttgg ATTTTGTG ttcgAAAAAG 545 0.780769 12-1 73 Ccaactcctt TATTTGCT agtgcggggg 80 0.725000 13-1 675 actgaagact TGTTTTAT aagtgtccca 682 2.286538 14-1 237 taaaagcgag TTTTTGAT ttagaaacac 244 0.613462 15-1 542 ccgttatcgc CATGTTTG gtggaacaat 549 0.780769 16-1 443 ttatattggc CATTTGAT ttaTACTTGT 450 0.501923 17-1 545 attgtaaagt CTCTTTTT ggatattgca 552 0.780769 18-1 14 AGCACTAAga TTTTTGAT ataagatcca 21 0.669231 19-1 424 tatataactt TATTTTTT tttattaatt 431 2.788462 20-1 360 gtaatcttcg TTTTCATT actatctcca 367 0.725000 21-1 416 gggccgcatg TATTTGTT gctgcagagc 423 0.725000 22-1 475 agggggtctc TTGTTGTT attAGCAGCG 482 0.557692 23-1 657 attgttaacg TTTTTTTT ttttttttaa 664 0.557692 24-1 238 gtcatgctat TATATTAT tcttacgtAA 245 1.450000 25-1 546 tagtattttg TGTTTTTT acaacaacct 553 0.390385 26-1 357 tcgcgaacgg TATTTGAT atatgctaga 364 0.613462 27-1 693 cttgcagtac TGCTTGTT taaatacgca 700 0.501923 28-1 545 Aggcgatata AATTTTTT tcacgggatt 552 1.505769 29-1 615 CTTTTcgtgg TCCTTTTT cctaatttgc 622 0.725000 sites: * ****** 5 (29 sites in 29 sequences) Conservedness in sites: >1 716 723 719 -w 1.505769 >2 41 48 44 -w 0.892308 >3 150 157 153 -w 1.115385 >4 725 732 728 -w 0.557692 >5 714 721 717 -w 0.669231 >6 165 172 168 -w 1.840385 >7 710 717 713 -w 1.840385 >8 442 449 445 -w 0.501923 >9 477 484 480 -w 0.557692 >10 666 673 669 -w 1.840385 >11 538 545 541 -w 0.780769 >12 73 80 76 -w 0.725000 >13 675 682 678 -w 2.286538 >14 237 244 240 -w 0.613462 >15 542 549 545 -w 0.780769 >16 443 450 446 -w 0.501923 >17 545 552 548 -w 0.780769 >18 14 21 17 -w 0.669231 >19 424 431 427 -w 2.788462 >20 360 367 363 -w 0.725000 >21 416 423 419 -w 0.725000 >22 475 482 478 -w 0.557692 >23 657 664 660 -w 0.557692 >24 238 245 241 -w 1.450000 >25 546 553 549 -w 0.390385 >26 357 364 360 -w 0.613462 >27 693 700 696 -w 0.501923 >28 545 552 548 -w 1.505769 >29 615 622 618 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 78 0.7 3 . . . 75 0.7 4 . . . 87 1.0 5 . . . 84 0.9 6 . . 39 53 0.6 7 . . . 69 0.6 8 . . . 81 0.8 non- site . . . 30 site . . . 79 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 10 7 3 . . . 10 7 4 . . . 13 10 5 . . . 12 9 6 . . 4 4 6 7 . . . 8 6 8 . . . 11 8 site . . . 11 8 Weighted motif model: POS A C G T Prob 1 0.099970 0.082272 0.016920 0.800839 0.775642 3 0.028292 0.145209 0.034403 0.792097 0.833140 4 0.073746 0.017586 0.041396 0.867272 0.986555 5 0.075494 0.075279 0.016920 0.832307 0.873616 6 0.051019 0.017586 0.273913 0.657482 0.674303 7 0.248571 0.040313 0.016920 0.694195 0.579571 8 0.028292 0.092761 0.065871 0.813076 0.839087 Conservedness in bits: 5.561914 Conservedness in prob: 9.295903 Concensus sequence: TTTTTTT Complete log-likelihood ratio = 200 bits Missing position information = 155 bits Log-likelihood ratio statistic = 44 bits Degrees of freedom = 21 Information per parameter = 2.14 bits MOTIF J 1-1 580 tttgtatgta GGCATCAT cggaaatttg 587 1.505769 2-1 649 cacaaataac TGCAACAG cgcctacaat 656 0.892308 3-1 379 aaacacaagt GGCAGCTT ttctcgagaa 386 1.115385 4-1 776 accctttgga GGCAACAT agatagataa 783 0.557692 5-1 457 aaatagaaaa GGAAAGAT aataaatact 464 0.669231 6-1 80 cttagtagaa TGAAATAG taccacctac 87 1.840385 7-1 590 aacagcatga TGCAACAG ctcaaaagac 597 1.840385 8-1 352 tgccctatat AGCACGAC tactccactc 359 0.501923 9-1 587 gcttcctttt AGCACTTT ctctctcacc 594 0.557692 10-1 59 gtgttcttct TGCAGCAC atcagctgct 66 1.840385 11-1 70 actatcccac TGCATTAT caatccttac 77 0.780769 12-1 56 agtttgtcgt TGCATCTC caactccttT 63 0.725000 13-1 521 gtcaggtctc GACACCAT aaatcgaagt 528 2.286538 14-1 584 tttcattcgg TGCAGCAT tttaattcag 591 0.613462 15-1 137 ctgcatacta AGAAACTT aaactatcgc 144 0.780769 16-1 5 acat TGAACGTG attttggaac 12 0.501923 17-1 15 tttactactg AGCAGCTT gaggctttca 22 0.780769 18-1 355 tcaaggaaat TACACTAT gatggctcat 362 0.669231 19-1 536 gttgtatctc TGCAGGAT gccctttttg 543 2.788462 20-1 32 acaagtaggc GGCATCAC cCTGCTTGGc 39 0.725000 21-1 364 tcacgctcgt GATAGCTT ctccactgct 371 0.725000 22-1 486 TGTTGTTatt AGCAGCGG aatatctttg 493 0.557692 23-1 764 tgtgtagatt AGCAGCAG acactCCTTT 771 0.557692 24-1 212 ttgggcaact AGAATCAC acgtcagcgt 219 1.450000 25-1 46 agagaggatt GGCAGGAT tgtggcaagg 53 0.390385 26-1 522 agaaacgtgc GGCAGGAT aatgccgaaa 529 0.613462 27-1 167 cgggttacaa GAAACGAT tattgataaa 174 0.501923 28-1 694 gcctgttgct GGCAAGAG gtatatatat 701 1.505769 29-1 726 ttactctttt GGCAACTG tttataagaa 733 0.725000 sites: **** *** 5 (29 sites in 29 sequences) Conservedness in sites: >1 580 587 583 -w 1.505769 >2 649 656 652 -w 0.892308 >3 379 386 382 -w 1.115385 >4 776 783 779 -w 0.557692 >5 457 464 460 -w 0.669231 >6 80 87 83 -w 1.840385 >7 590 597 593 -w 1.840385 >8 352 359 355 -w 0.501923 >9 587 594 590 -w 0.557692 >10 59 66 62 -w 1.840385 >11 70 77 73 -w 0.780769 >12 56 63 59 -w 0.725000 >13 521 528 524 -w 2.286538 >14 584 591 587 -w 0.613462 >15 137 144 140 -w 0.780769 >16 5 12 8 -w 0.501923 >17 15 22 18 -w 0.780769 >18 355 362 358 -w 0.669231 >19 536 543 539 -w 2.788462 >20 32 39 35 -w 0.725000 >21 364 371 367 -w 0.725000 >22 486 493 489 -w 0.557692 >23 764 771 767 -w 0.557692 >24 212 219 215 -w 1.450000 >25 46 53 49 -w 0.390385 >26 522 529 525 -w 0.613462 >27 167 174 170 -w 0.501923 >28 694 701 697 -w 1.505769 >29 726 733 729 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . 39 . 0.3 2 . . 80 . 1.4 3 . 71 . . 1.0 4 94 . . . 1.3 6 . 55 27 . 0.7 7 66 . . . 0.5 8 . . 27 53 0.4 non- site . . 18 . site . . 26 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . 4 . 3 2 . . 17 . 14 3 . 13 . . 10 4 15 . . . 13 6 . 8 1 . 7 7 7 . . . 5 8 . . 1 4 4 site . . 1 . 1 Weighted motif model: POS A C G T Prob 1 0.190879 0.017586 0.371815 0.419720 0.360753 2 0.159410 0.017586 0.794892 0.028111 1.352979 3 0.208361 0.723880 0.016920 0.050839 1.066577 4 0.937382 0.017586 0.016920 0.028111 1.274533 6 0.028292 0.571782 0.251186 0.148741 0.747712 7 0.734585 0.017586 0.034403 0.213426 0.651396 8 0.028292 0.181922 0.280906 0.508881 0.418539 Conservedness in bits: 5.872488 Conservedness in prob: 10.108681 Concensus sequence: GGCACAT Complete log-likelihood ratio = 210 bits Missing position information = 171 bits Log-likelihood ratio statistic = 39 bits Degrees of freedom = 21 Information per parameter = 1.86 bits seed 3 time: 21 seconds (0.35 minutes) MOTIF A 1-1 603 atttgcattg TGTGAAGG ttgtgcatat 610 1.505769 2-1 236 tccaaaggcg GGAGATGC ctatttctat 243 0.892308 3-1 750 ctcatccact TTCGGTTC aatagtGCAA 757 1.115385 4-1 293 gtctttggca CGCGATTG aaacgcgcta 300 0.557692 5-1 657 GAAAACAata TATAGTGC tgttgaaata 664 0.669231 6-1 429 actttttagt TTGGGAAG agttaactgg 436 1.840385 7-1 405 aatttatcct TATGTATG ttcttttgaa 412 1.840385 8-1 281 atgtaaagag TGCGGTTG attcgtttta 288 0.501923 9-1 181 actctaaaga GGTGGAAG gcaagagtct 188 0.557692 10-1 533 ttagtgcaaa TTGGGAAG agatctattg 540 1.840385 11-1 54 Ttatgtgttg TTATTCAC tatcccactg 61 0.780769 12-1 344 ttgcatcact GTAGGAGC gactataaaa 351 0.725000 13-1 285 agatgaagtt TTCGTGTG tataaatata 292 2.286538 14-1 555 cgccaatagg TTTGGAAG aacaTTGGTA 562 0.613462 15-1 8 ttacata TTTAGCGC ttaacattac 15 0.780769 16-1 325 ctgttcgctt TAAGGAAG atctcataag 332 0.501923 17-1 490 aatctacatt TAGGGTAC ctgtcacata 497 0.780769 18-1 372 tgatggctca TATGATAG atacatataa 379 0.669231 19-1 440 TTTTTattaa TTGGGCTG caagacaatt 447 2.788462 20-1 463 CTTTCTTtac GGTGTTTG gagacgtatt 470 0.725000 21-1 574 gccacgtcct TTTGGAAC ccgtccatcc 581 0.725000 22-1 559 gcacagaact TGCGGATG cttccgcaga 566 0.557692 23-1 508 tgaacagatg GTAGGCTC taaattgcgt 515 0.557692 24-1 578 tgctcactat TTCGGATT tacttctagt 585 1.450000 25-1 773 gttagagtct TTGGTACG caaacatttt 780 0.390385 26-1 767 atattcccat TAGGATGC tctgaggctg 774 0.613462 27-1 772 taaattaata CTGGGAAG ccaaaCCAAA 779 0.501923 28-1 762 aaatatttgg TTAGGATG attccctttc 769 1.505769 29-1 109 ccaactcatg TTAGAATG cacgcccatc 116 0.725000 sites: ** ***** 5 (29 sites in 29 sequences) Conservedness in sites: >1 603 610 606 -w 1.505769 >2 236 243 239 -w 0.892308 >3 750 757 753 -w 1.115385 >4 293 300 296 -w 0.557692 >5 657 664 660 -w 0.669231 >6 429 436 432 -w 1.840385 >7 405 412 408 -w 1.840385 >8 281 288 284 -w 0.501923 >9 181 188 184 -w 0.557692 >10 533 540 536 -w 1.840385 >11 54 61 57 -w 0.780769 >12 344 351 347 -w 0.725000 >13 285 292 288 -w 2.286538 >14 555 562 558 -w 0.613462 >15 8 15 11 -w 0.780769 >16 325 332 328 -w 0.501923 >17 490 497 493 -w 0.780769 >18 372 379 375 -w 0.669231 >19 440 447 443 -w 2.788462 >20 463 470 466 -w 0.725000 >21 574 581 577 -w 0.725000 >22 559 566 562 -w 0.557692 >23 508 515 511 -w 0.557692 >24 578 585 581 -w 1.450000 >25 773 780 776 -w 0.390385 >26 767 774 770 -w 0.613462 >27 772 779 775 -w 0.501923 >28 762 769 765 -w 1.505769 >29 109 116 112 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 72 0.7 2 . . 24 53 0.3 4 . . 83 . 1.4 5 . . 58 . 0.6 6 50 . . . 0.2 7 . . . 40 0.1 8 . 33 58 . 1.0 non- site . . 18 . site . . 39 . 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 9 7 2 . . 1 4 3 4 . . 18 . 14 5 . . 10 . 6 6 3 . . . 2 7 . . . 2 1 8 . 3 10 . 10 site . . 4 . 2 Weighted motif model: POS A C G T Prob 1 0.028292 0.050803 0.125312 0.795594 0.817309 2 0.187382 0.017586 0.183004 0.612027 0.400372 4 0.073746 0.017586 0.856081 0.052587 1.536238 5 0.183886 0.017586 0.581605 0.216922 0.644675 6 0.507313 0.171432 0.088598 0.232657 0.137401 7 0.304515 0.029824 0.179507 0.486153 0.217975 8 0.028292 0.257097 0.641046 0.073566 0.998983 Conservedness in bits: 4.752952 Conservedness in prob: 9.335581 Concensus sequence: TTGGATG Complete log-likelihood ratio = 155 bits Missing position information = 134 bits Log-likelihood ratio statistic = 21 bits Degrees of freedom = 21 Information per parameter = 1.01 bits MOTIF B 1-1 626 catataaagg GTTTTGCA taacGGACGT 633 1.505769 2-1 447 gttctgcacg TTTTCGTA taatattaaa 454 0.892308 3-1 169 Tgttataagg TTGTTTCA tatgtgtttt 176 1.115385 4-1 451 ggtacaggtg TTATGGCA cgtgcgaata 458 0.557692 5-1 131 tccaagagat TTGTTTGA atatactttg 138 0.669231 6-1 191 tttttccttc TTTTCGCC gtactcagcc 198 1.840385 7-1 82 TTTTCTgcaa TTGTTTCA atgccctgta 89 1.840385 8-1 13 ctgtatagtc TTCTTCCA ttctcttaac 20 0.501923 9-1 746 Agggaagggg CTATCTCA ttatccagat 753 0.557692 10-1 55 gctcgtgttc TTCTTGCA gcacatcagc 62 1.840385 11-1 195 CAGaccatct TTGATTCC tattccaata 202 0.780769 12-1 719 tttctattta CTTTTATA tttcttgacc 726 0.725000 13-1 685 TGTTTTataa GTGTCCCA agcgagacct 692 2.286538 14-1 460 ttactcaaat GTGTCACA atttcaactt 467 0.613462 15-1 157 actatcgcca TTGTCTCA aaatagcaaa 164 0.780769 16-1 457 tgatttatac TTGTTTCA gatcctttgt 464 0.501923 17-1 232 tcttttcctt TTTTTACA atagctaatt 239 0.780769 18-1 662 tactgtaact GTGTCACA ctagcgggtt 669 0.669231 19-1 592 acttttcgcg CTGTCTCA ttttggtgcg 599 2.788462 20-1 76 tgactgttca TTATTGCA atggggcggg 83 0.725000 21-1 699 GTTTTTGTTt TTGTTTTT gttTTGTTTT 706 0.725000 22-1 224 agcattcctc TTTATCCA agtcgtatat 231 0.557692 23-1 234 gagatacaac ATGTTCCA tgatatggaa 241 0.557692 24-1 351 ttgtccttct TTGTTTCA agcgtttata 358 1.450000 25-1 53 attggcagga TTGTGGCA agggcaatcg 60 0.390385 26-1 210 TGTTATaaag TTGTTTCA tatgtgtttt 217 0.613462 27-1 586 ggtataatat TTGTTACA aattattgat 593 0.501923 28-1 641 TGTTTcaata CTGTTTCA gaagtgcgtc 648 1.505769 29-1 403 taaaggctta CTTATTCA cattacgggt 410 0.725000 sites: ***** ** 5 (29 sites in 29 sequences) Conservedness in sites: >1 626 633 629 -w 1.505769 >2 447 454 450 -w 0.892308 >3 169 176 172 -w 1.115385 >4 451 458 454 -w 0.557692 >5 131 138 134 -w 0.669231 >6 191 198 194 -w 1.840385 >7 82 89 85 -w 1.840385 >8 13 20 16 -w 0.501923 >9 746 753 749 -w 0.557692 >10 55 62 58 -w 1.840385 >11 195 202 198 -w 0.780769 >12 719 726 722 -w 0.725000 >13 685 692 688 -w 2.286538 >14 460 467 463 -w 0.613462 >15 157 164 160 -w 0.780769 >16 457 464 460 -w 0.501923 >17 232 239 235 -w 0.780769 >18 662 669 665 -w 0.669231 >19 592 599 595 -w 2.788462 >20 76 83 79 -w 0.725000 >21 699 706 702 -w 0.725000 >22 224 231 227 -w 0.557692 >23 234 241 237 -w 0.557692 >24 351 358 354 -w 1.450000 >25 53 60 56 -w 0.390385 >26 210 217 213 -w 0.613462 >27 586 593 589 -w 0.501923 >28 641 648 644 -w 1.505769 >29 403 410 406 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 . . . 62 0.4 2 . . . 94 1.3 3 . . 55 . 0.5 4 . . . 84 0.9 5 . 27 . 62 0.6 7 . 80 . . 1.3 8 84 . . . 0.9 non- site . . . 30 site . . . 51 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 . . . 6 4 2 . . . 15 13 3 . . 9 . 5 4 . . . 12 9 5 . 1 . 6 6 7 . 16 . . 13 8 12 . . . 9 site . . . 4 2 Weighted motif model: POS A C G T Prob 1 0.045774 0.215139 0.176011 0.563076 0.379105 2 0.028292 0.017586 0.016920 0.937202 1.282005 3 0.085984 0.091013 0.574612 0.248391 0.597452 4 0.092977 0.017586 0.016920 0.872517 1.024323 5 0.028292 0.344509 0.046640 0.580559 0.623448 7 0.028292 0.832272 0.037899 0.101538 1.403997 8 0.832487 0.099754 0.016920 0.050839 0.895495 Conservedness in bits: 6.205825 Conservedness in prob: 10.020716 Concensus sequence: TTGTTCA Complete log-likelihood ratio = 216 bits Missing position information = 174 bits Log-likelihood ratio statistic = 42 bits Degrees of freedom = 21 Information per parameter = 2 bits MOTIF C 1-1 148 gacaaaatat ACGTTTC cgagacttct 154 1.505769 2-1 754 tagaaacagc AAGCCTC atcattgcaa 760 0.892308 3-1 129 cagctaggga AGGTCGG gttttgtctc 135 1.115385 4-1 726 tcataacatt ATTTTTC ggttccacag 732 0.557692 5-1 702 tatttgtaaa ATGTCTG ttaaatgttt 708 0.669231 6-1 650 ggcattgaaa CAATTGC agaaaagcaa 656 1.840385 7-1 711 ctaccgtact CTTTTTC cttttttatt 717 1.840385 8-1 359 tatagcacga CTACTCC actcctaact 365 0.501923 9-1 269 ataagcataa ACGTATC attgttcctt 275 0.557692 10-1 21 aaaaggttta ATATTTC gaagcttctc 27 1.840385 11-1 270 CGTGTTgaca ACACTTC gggagtttcc 276 0.780769 12-1 583 gacatcgtaa AGGTTTC aaatgcgaag 589 0.725000 13-1 108 CCacttactt ACATCTG aaaattgcaa 114 2.286538 14-1 658 TGttttaaaa ATGTTTC agcccagtaa 664 0.613462 15-1 579 tgatcaattc GTGTTTG caagctagtg 585 0.780769 16-1 13 attgaacgtg ATTTTGG aactggaaat 19 0.501923 17-1 592 gctgtaacat AATTTTC tgaaacaata 598 0.780769 18-1 519 tcatcgagaa ATATTTG aattgcactg 525 0.669231 19-1 712 tgtaaggtat GTGTTGC tcttaaaata 718 2.788462 20-1 275 gctgatacgg ATACTTG gaggcacacg 281 0.725000 21-1 499 tgtaattgac GCATTTC cgcttggaac 505 0.725000 22-1 38 gggcctacta AAATGGC gtggtatttt 44 0.557692 23-1 212 tcatactgac ATATCTC attttgagat 218 0.557692 24-1 123 tcaatattga ATTTGTC gacgatgact 129 1.450000 25-1 99 agcttcggtg GTGTTGC ctggtttgca 105 0.390385 26-1 788 gaggctgcta ACATCTC gtagcg 794 0.613462 27-1 132 ctgaataatg CTGTCGC tatctcatca 138 0.501923 28-1 686 tataactggc CTGTTGC tggcaagagg 692 1.505769 29-1 372 gataacggtt CTTTCTG catattccga 378 0.725000 sites: ******* 5 (29 sites in 29 sequences) Conservedness in sites: >1 148 154 151 -w 1.505769 >2 754 760 757 -w 0.892308 >3 129 135 132 -w 1.115385 >4 726 732 729 -w 0.557692 >5 702 708 705 -w 0.669231 >6 650 656 653 -w 1.840385 >7 711 717 714 -w 1.840385 >8 359 365 362 -w 0.501923 >9 269 275 272 -w 0.557692 >10 21 27 24 -w 1.840385 >11 270 276 273 -w 0.780769 >12 583 589 586 -w 0.725000 >13 108 114 111 -w 2.286538 >14 658 664 661 -w 0.613462 >15 579 585 582 -w 0.780769 >16 13 19 16 -w 0.501923 >17 592 598 595 -w 0.780769 >18 519 525 522 -w 0.669231 >19 712 718 715 -w 2.788462 >20 275 281 278 -w 0.725000 >21 499 505 502 -w 0.725000 >22 38 44 41 -w 0.557692 >23 212 218 215 -w 0.557692 >24 123 129 126 -w 1.450000 >25 99 105 102 -w 0.390385 >26 788 794 791 -w 0.613462 >27 132 138 135 -w 0.501923 >28 686 692 689 -w 1.505769 >29 372 378 375 -w 0.725000 Conservedness end. Motif model (residue frequency x 100): POS A C G T Info 1 62 . . . 0.5 2 . . . 56 0.2 3 37 . 39 . 0.3 4 . . . 81 0.9 5 . 27 . 59 0.4 6 . . 27 66 0.7 7 . 68 27 . 1.2 non- site . 19 . 30 site . 22 . 42 7 columns Information (relative entropy) contribution in tenth bits: POS A C G T Info 1 6 . . . 5 2 . . . 5 2 3 1 . 4 . 3 4 . . . 11 9 5 . 1 . 6 4 6 . . 1 7 7 7 . 12 1 . 12 site . 1 . 2 1 Weighted motif model: POS A C G T Prob 1 0.573746 0.234369 0.163773 0.028111 0.443763 2 0.155914 0.220383 0.074612 0.549090 0.242447 3 0.376194 0.017586 0.394542 0.211678 0.354008 4 0.028292 0.108495 0.016920 0.846293 0.982319 5 0.045774 0.248355 0.079857 0.626013 0.502453 6 0.028292 0.033320 0.305382 0.633006 0.689989 7 0.028292 0.692411 0.251186 0.028111 1.187337 Conservedness in bits: 4.402317 Conservedness in prob: 8.138165 Concensus sequence: ATGTTTC Complete log-likelihood ratio = 161 bits Missing position information = 130 bits Log-likelihood ratio statistic = 30 bits Degrees of freedom = 21 Information per parameter = 1.46 bits MOTIF D 1-1 638 TTTGCAtaac GGACGTTTT tcacgtactc 646 1.505769 2-1 100 GCTTTTGAag GGACTTACT agccactcgc 108 0.892308 3-1 151 gtctcatgtt GTTCGTTTT gttataaggT 159 1.115385 4-1 748 cacagtgatt GAGCTTTTT gagagaataa 756 0.557692 5-1 557 tctcgcttta GGATTTTTT cccattaaga 565 0.669231 6-1 682 taatatatca TAACTTTTT actcttgcct 690 1.840385 7-1 751 gtattataaa GCTCTGTAT atctggaaaa 759 1.840385 8-1 197 aagctcgctt TGGCTTGTT ctaaggttgt 205 0.501923 9-1 588 cttcctttta GCACTTTCT ctctcaccct 596 0.557692 10-1 289 GCTGAAACAc ATTCTTGTT acatctgtca 297 1.840385 11-1 257 tcatatccta AAACGTGTT gacaACACTT 265 0.780769 12-1 138 tctaggtttg GGGCTTGTT ggtatgttgc 146 0.725000 13-1 353 ttttcggaga GCTCGTTTC aaaatgaaac 361 2.286538 14-1 183 tactacttta GATCTTTTT agatcctttt 191 0.613462 15-1 198 ataccgctgg GCGCTTATC tatattaacc 206 0.780769 16-1 102 acaagaacaa GAACGTGTT acgaaATTTG 110 0.501923 17-1 721 taattatcgt GAACTTTTC cagtatttac 729 0.780769 18-1 731 ctatatataa ACACTGGTT cggaatacca 739 0.669231 19-1 747 cgacatcctt TATCTTTTT tcctttaaga 755 2.788462 20-1 438 caatttatca GCAATTGCT CTGAGTCTTT 446 0.725000 21-1 397 gtggtatttg TAGCTTGTT gggccgcatg 405 0.725000 22-1 314 aaggtaataa TGACTTTTC atgacgaatt 322 0.557692 23-1 652 gacctattgt TAACGTTTT tttttTTTTT 660 0.557692 24-1 506 tacaaccata ATGCTGTTT tagaatcgca 514 1.450000 25-1 413 Catctttgag ACTCTTTCT gcactttaaa 421 0.390385 26-1 476 tgataggctg AAGCGTTTA aaatagagaa 484 0.613462 27-1 318 ccaccagaac ACCCTTTTT atagccacta 326 0.501923 28-1 627 atatgtttca ATACTGTTT caataCTGTT 635 1.505769 29-1 614 CCTTTTCGTg GTCCTTTTT cctaatttgc 622 0.725000 sites: * ****** 5 (29 sites in 29 sequences) Conservedness in sites: >1 638 646 642 -w 1.505769 >2 100 108 104 -w 0.892308 >3 151 159 155 -w 1.115385 >4 748 756 752 -w 0.557692 >5 557 565 561 -w 0.669231 >6 682 690 686 -w 1.840385 >7 751 759 755 -w 1.840385 >8 197 205 201 -w 0.501923 >9 588 596 592 -w 0.557692 >10 289 297 293 -w 1.840385 >11 257 265 261 -w 0.780769 >12 138 146 142 -w 0.725000 >13 353 361 357 -w 2.286538 >14 183 191 187 -w 0.613462 >15 198 206 202 -w 0.780769 >16 102 110 106 -w 0.501923 >17 721 729 725 -w 0.780769 >18 731 739 735 -w 0.669231 >19 747 755 751 -w 2.788462 >20 438 446 442 -w 0.725000 >21 397 405 401 -w 0.725000 >22 314 322 318 -w 0.557692 >23 652 660 656 -w 0.557692 >24 506 514 510 -w 1.450000 >25 413 421 417 -w 0.390385 >26 476 484 480 -w 0.613462 >27 318 326 322 -w 0.501923 >28 627