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Program

9.00 am

–   9.10am  :

Welcome
Prof Jagath C. Rajapakse
Director, BioInformatics Research Centre

Oral Session I
Chair: Prof Jagath C. Rajapakse

9.10am

–   9.30am  :

DNA Microarray Analysis using Neural Networks for Cancer Diagnosis
Prof Jagdish C. Patra

9.30am

–   9.50am  :

Using “omics” to study pathogen-host interactions during virus infection
Prof Richard J. Sugrue

9.50am

–   10.10am:

Visual Haptic-based Biomolecular Docking System
Prof Olga Sourina

10.10am

–   10.30am:

A new sampling method for protein folding: A hybrid Hamiltonian replica exchange molecular dynamics simulation
Prof Mu Yuguang

10.30am

–  10.50am:

Tea Break

Oral Session II
Chair: Prof Mu Yuguang

10.50am

–  11.10am :

Modelling DNA Packaging in Chromatin
Dr Nikolay Korolev

11.10am

–  11.30am :

DNA Motif Prediction of Transcription Binding Sites Using Complementary Mismatch Probability
Prof Shu Jian Jun

11.30am

–   11.50am:

A fuzzy based gene assignment for clustering short time series expression data
Prof Ponnuthurai N. Suganthan                 

11.50am

–   12.10pm:

A genomics approach to understanding pathogen response to oxidative stress
Prof Matthew Wook Chang

12.15pm

–   1.15pm :

Lunch

1.10pm

–   2.40pm :

Open House and Poster Session

2.40pm

–   3.00pm :

Tea Break

Oral Session III
Chair: Prof Cai Yiyu

3.00pm

–   3.20pm :

Distance Based Feature Selection for Clustering Microarray Data
Prof Manoranjan Dash

3.20pm

–   3.40pm :

Improved Statistical Schemes for Biological Sequence Segmentation
Prof Cheong Siew Ann

3.40pm

–   4.00pm :

Live Cell Imaging and Characterization
Prof Lin Feng

4.00pm

–   4.20pm :

Musings in Simulating Moletronics
Prof Su Haibin

4.20pm

–   4.40pm :

Graph-based clustering methods for the study of hot spots, active sites, and epitopes at protein binding interfaces: A full 'water exclusion' perspective
Prof Li Jinyan

4.40pm

–   5.00pm :

Rational Bézier Protein Surface
Prof Cai Yiyu

 * lunch is provided

Posters:

  1. SVM-RFE with Minimum Redundancy Maximum Relevancy Criteria for Gene Selection
    Piyushkumar A. Mundra and Jagath C. Rajapakse
  2. Mathematical modeling of Transforming growth factor –beta 1 protein activation and regulation in Liver Fibrosis.
    Lakshmi Venkatraman and Sourav S. Bhowmick
  3. Parallel DNA Sequence Alignment on the Cell Broadband Engine
    Adrianto Wirawan and Kwoh Chee Keon
    g
  4. Higher-Order Markov DT-MRI Tractography
    Zheng Bo and Jagath C. Rajapakse
  5. Identification of disease genes by combining heterogeneous data sources
    Li Yongjin and
    Jagdish C. Patra
  6. Amyloid protofibril formation mechanism probed by REMD simulations
    Jiang Ping and Mu Yuguang
  7. Polar confinement modulates hydrophobicity
    Xu Weixin and Mu Yuguang
  8. Size-specific and brightness weighted cell tracking in 2D images
    Merlin V. A.  James and Jagath C. Rajapakse
  9. Cross Validation of Gene Regulatory and Protein Interaction Networks
    Iti Chaturvedi and Jagath C. Rajapakse
  10. Features for Protein Localization in Microscopic Cellular Images
    Liu Song and Jagath C. Rajapakse
  11. Computer Modeling Reveals That Modifications of the Histone Tails Define Salt-Dependent Aggregation of the Nucleosome Core Particles
    Yang Ye and Lars Nordenskiold
  12. Feature Selection Based on Feature Ranking and Classification on the Hapmap Genotype Data
    Farideh Fazayeli and Wang Lipo
  13. Combination of computational and molecular approaches for prediction of metabolic pathway bypasses among Pseudomonas species
    Deepak Perumal and Meena K. Sakharkar
  14. 3D Cellular Image Visualization and Processing
    Chandrasekaran Indhumathi and Cai Yiyu
  15. LMSAD: Lipid Mass Spectrometry Analysis Database
    Yu Rongdong and Cai Yiyu
  16. Influence of histone tails on DNA compaction, DNA structure and ion binding
    Yu Hang and Lars Nordenskiold
  17. Fat-tail test of regulatory DNA sequences
    Li Yajing and Shu Jian-Jun
  18. Weeder-based Identification of Potential Splicing Regulatory Motifs in Constitutive and Alternative Exons
    Liu Nan and Christian Schönbach

 

 

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